EWM27866.1, cds2805 (CDS) Nannochloropsis gaditana

Overview
NameEWM27866.1
Unique Namecds2805
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1297234..1297473 +
Alignment locationCM002459.1:1297644..1297751 +
Alignment locationCM002459.1:1297934..1298026 +
Alignment locationCM002459.1:1298223..1298349 +
Alignment locationCM002459.1:1298446..1298538 +
Alignment locationCM002459.1:1298783..1299249 +
Alignment locationCM002459.1:1299466..1299682 +
Alignment locationCM002459.1:1299856..1299988 +
Alignment locationCM002459.1:1300142..1300244 +
Alignment locationCM002459.1:1300384..1300532 +
Alignment locationCM002459.1:1300730..1300841 +
Alignment locationCM002459.1:1300979..1301026 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27866.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100094g3.6801.mrna
GbkeyCDS
Notelike family protein
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1297234..1297473 +
CM002459.1supercontigCM002459.1:1297644..1297751 +
CM002459.1supercontigCM002459.1:1297934..1298026 +
CM002459.1supercontigCM002459.1:1298223..1298349 +
CM002459.1supercontigCM002459.1:1298446..1298538 +
CM002459.1supercontigCM002459.1:1298783..1299249 +
CM002459.1supercontigCM002459.1:1299466..1299682 +
CM002459.1supercontigCM002459.1:1299856..1299988 +
CM002459.1supercontigCM002459.1:1300142..1300244 +
CM002459.1supercontigCM002459.1:1300384..1300532 +
CM002459.1supercontigCM002459.1:1300730..1300841 +
CM002459.1supercontigCM002459.1:1300979..1301026 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR003691CrcB
Homology
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|585110196|gb|EWM27866.1| (hypothetical protein Naga_100094g3 [Nannochloropsis gaditana])

HSP 1 Score: 1288.09 bits (3332), Expect = 0.000e+0
Identity = 629/629 (100.00%), Postives = 629/629 (100.00%), Query Frame = 0
Query:    1 MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRWGWW 629
            MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRWGWW
Sbjct:    1 MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRWGWW 629          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|553195452|ref|XP_005856150.1| (hypothetical protein NGA_0249010 [Nannochloropsis gaditana CCMP526] >gi|422292917|gb|EKU20218.1| hypothetical protein NGA_0249010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1072.77 bits (2773), Expect = 0.000e+0
Identity = 528/533 (99.06%), Postives = 530/533 (99.44%), Query Frame = 0
Query:    1 MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLIL 533
            MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHP I  ++
Sbjct:    1 MSAQLLDHQGKDGKSYGAVAISSPRVDLNSKELSWQPSIRDLPAARPTRTNSCDNAGKAFTASGMPPVTPAAASPQRIPRTHRSWVTVRVVSGIIMFSMIGNIIRIELERYIIQLDARQGNIKSSMYPSILANLLGCFIMGLLYECRGFLERHLHGILSFPSMPDASSLYVAITTWMCGSITTYSGWNSVVAHRMVYDSFTYGIFSAMTGAATAYLALLHGMDVGSGFTRVQLVEDTDKKASPPSLPSPPADSSSLSISVASPRQSPSGLTHLPSGPLPEEEEEGDLLERDEEAAAEEEESRRRMWGARRGKRKERRSEEGRGTSGGMTWLTAWLGLRRGKEDGGSEEEEEEEGGGGEERRKEDGKVLFGPLPEELAASGAALMEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPAIAQLI 533          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|553192026|ref|XP_005855500.1| (hypothetical protein NGA_0249020 [Nannochloropsis gaditana CCMP526] >gi|422293558|gb|EKU20858.1| hypothetical protein NGA_0249020 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 296.59 bits (758), Expect = 1.449e-94
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0
Query:  384 MEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLIL 533
            MEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHP I  ++
Sbjct:    1 MEPHRYISPERKPVSRPTNSASSASSYSRPLGQQGGGREGGSEAGREGGGIQMQAQPPGFNPTEDDDDVEYSIYSFRKPNQRDAFILGEVSFYTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPAIAQLI 150          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|330930625|ref|XP_003303100.1| (hypothetical protein PTT_15161 [Pyrenophora teres f. teres 0-1] >gi|311321136|gb|EFQ88802.1| hypothetical protein PTT_15161 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 85.8853 bits (211), Expect = 7.010e-14
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 0
Query:  504 LSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLG-ATLSAFFD----TIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRW--GW 628
             +C+FAPLGA LRY L+L M      + + PHFPL TFT NVLG A L   FD     +       G      I++A++ GF GCL+T ST+ +EL  LP  HA+ Y   + +   A+  +I+ S RW  GW
Sbjct:  437 FACVFAPLGAILRYYLSLHM------NPLSPHFPLGTFTVNVLGTAVLGMAFDLQHVQLSSTGLVGGGLLGCQILQAIMDGFCGCLTTVSTWIVELDSLPRGHAYAYGGGSVVAGLALLLVIMGSVRWTLGW 562          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|1063248217|gb|ODQ70720.1| (hypothetical protein LIPSTDRAFT_5482 [Lipomyces starkeyi NRRL Y-11557])

HSP 1 Score: 83.5741 bits (205), Expect = 2.616e-13
Identity = 45/120 (37.50%), Postives = 65/120 (54.17%), Query Frame = 0
Query:  508 FAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRT-AHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRW 626
            F PLG   R++L+  M  +P    + P FPL TFTAN+LG  L   F     +++ R DGR    +++ ++ G+ GCL+T STFALEL  L   HAW+Y   + +    +  L I    W
Sbjct:  349 FGPLGTLTRWILSRYM--NP----LRPSFPLGTFTANILGTVLIGIF----AIIQQRVDGRVGCQVLRGMMDGYCGCLTTVSTFALELQTLQRSHAWRYGSTSVVVGVIVMCLTIGVDHW 458          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|1066290285|ref|XP_018033183.1| (hypothetical protein CC84DRAFT_1219764 [Paraphaeosphaeria sporulosa] >gi|1027142365|gb|OAG02818.1| hypothetical protein CC84DRAFT_1219764 [Paraphaeosphaeria sporulosa])

HSP 1 Score: 82.8037 bits (203), Expect = 6.880e-13
Identity = 47/131 (35.88%), Postives = 69/131 (52.67%), Query Frame = 0
Query:  504 LSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLG-ATLSAFFD---TIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRW--GW 628
             +C+FAPLG  LR+ ++L +      + I P FPL TF  N+ G A L   +D     I      G      +++ ++ GFDGCL+T ST+ LE+  L   HAWKYA A+      +  +++ S RW  GW
Sbjct:  439 FACVFAPLGCLLRFYVSLKL------NPISPSFPLGTFVVNIFGTAVLGMAYDLQHVQIGGSGVGGGRAGCQVLQGIMDGFDGCLTTVSTWILEIDTLKRSHAWKYAFASIAAGICVLVMVMGSVRWSVGW 563          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|1183395464|gb|ORY20401.1| (CRCB-domain-containing protein [Neocallimastix californiae])

HSP 1 Score: 79.337 bits (194), Expect = 1.974e-12
Identity = 55/154 (35.71%), Postives = 81/154 (52.60%), Query Frame = 0
Query:  478 AGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGA-TLSAFFDTIIPVLKDRGDGRTAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASH--RWGW 628
            +G  G+  +AAI I T+   +    W+SCL AP GA LRY+L+   +           FP+ TF AN++G   L  FF  I     D+ D    H + A+  GF GCL+T STF  EL+ L T++ + Y L    T+ A+AQ+++      +GW
Sbjct:  169 SGLTGVAMMAAI-ILTIFDGDNRKIWISCLLAPFGACLRYLLSFRNSMFT-------DFPMGTFLANIVGTLCLGIFF--IFRFAFDQKD-FLCHFLVAVGDGFCGCLTTISTFINELNSLNTKNLYVYCL----TSVAVAQIVLCFSFGFYGW 307          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|1183356847|gb|ORX84432.1| (hypothetical protein BCR32DRAFT_266305 [Anaeromyces robustus])

HSP 1 Score: 78.1814 bits (191), Expect = 4.103e-12
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 0
Query:  503 WLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGA-TLSAFFDTIIPVLKDRGDGR--TAHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRWGW 628
            W+SC+ AP GA LRY+L+   + +P       +FPL TF AN++G   L  FF     + +   D +    H + A+  GF GCL+T STF  E+  L T++ + Y + +  T Q +  L+I    +GW
Sbjct:  187 WISCILAPFGACLRYILSFRNSMYP-------NFPLGTFLANIIGTLCLGIFF-----IFRFAFDKKEFLCHFLIAVADGFCGCLTTISTFINEIVSLNTKYLYFYCIVSIATAQIV--LLITFGFYGW 301          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|729713858|emb|CEI89867.1| (hypothetical protein RMCBS344292_04210 [Rhizopus microsporus])

HSP 1 Score: 73.1738 bits (178), Expect = 3.736e-11
Identity = 43/126 (34.13%), Postives = 75/126 (59.52%), Query Frame = 0
Query:  504 LSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRT---AHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRW 626
            L+C+FAP GA LR+VL+     + ++H +   F + TFTAN+LG  + A    ++ +L+      T    ++++AL  GF GCL+T STF +EL+ LP  +++ Y +++ +  Q    +I+ S+ W
Sbjct:   69 LACVFAPAGAILRWVLSF---YNSSLHSL---FLVGTFTANILGTIILA----VLSLLQSGAIIMTPTKCYVLQALADGFCGCLTTISTFMVELNALPLVNSYIYGISSVVVGQCFMFVILGSYIW 184          
BLAST of EWM27866.1 vs. NCBI_GenBank
Match: gi|729700646|emb|CEJ02367.1| (hypothetical protein RMCBS344292_16374 [Rhizopus microsporus])

HSP 1 Score: 73.1738 bits (178), Expect = 9.406e-11
Identity = 45/154 (29.22%), Postives = 81/154 (52.60%), Query Frame = 0
Query:  476 YTAGAAGLLALAAIKIKTVESSEMEPRWLSCLFAPLGAALRYVLALAMAQHPTIHLILPHFPLQTFTANVLGATLSAFFDTIIPVLKDRGDGRT---AHIMKALLVGFDGCLSTYSTFALELHKLPTQHAWKYALATFITTQAIAQLIIASHRW 626
            Y   + G+L    +    +     +   L+C+FAP GA LR+VL+   +   ++ L+       TFTAN+LG  + A    ++ +L+      T    ++++AL  GF GCL+T STF +EL+ LP  +++ Y +++ +  Q    +I+ S+ W
Sbjct:   95 YLVISFGILCWIGVIFAAIFGKSQKELALACVFAPAGALLRWVLSFYNSSLYSLFLV------GTFTANILGTIILA----VLSLLQSGAIIMTPTKCYVLQALADGFCGCLTTISTFMVELNALPLVNSYIYGVSSVVVGQCFMFVILGSYIW 238          
The following BLAST results are available for this feature:
BLAST of EWM27866.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110196|gb|EWM27866.1|0.000e+0100.00hypothetical protein Naga_100094g3 [Nannochloropsi... [more]
gi|553195452|ref|XP_005856150.1|0.000e+099.06hypothetical protein NGA_0249010 [Nannochloropsis ... [more]
gi|553192026|ref|XP_005855500.1|1.449e-9496.67hypothetical protein NGA_0249020 [Nannochloropsis ... [more]
gi|330930625|ref|XP_003303100.1|7.010e-1440.91hypothetical protein PTT_15161 [Pyrenophora teres ... [more]
gi|1063248217|gb|ODQ70720.1|2.616e-1337.50hypothetical protein LIPSTDRAFT_5482 [Lipomyces st... [more]
gi|1066290285|ref|XP_018033183.1|6.880e-1335.88hypothetical protein CC84DRAFT_1219764 [Paraphaeos... [more]
gi|1183395464|gb|ORY20401.1|1.974e-1235.71CRCB-domain-containing protein [Neocallimastix cal... [more]
gi|1183356847|gb|ORX84432.1|4.103e-1234.88hypothetical protein BCR32DRAFT_266305 [Anaeromyce... [more]
gi|729713858|emb|CEI89867.1|3.736e-1134.13hypothetical protein RMCBS344292_04210 [Rhizopus m... [more]
gi|729700646|emb|CEJ02367.1|9.406e-1129.22hypothetical protein RMCBS344292_16374 [Rhizopus m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2813rna2813Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications