EWM27877.1, cds2795 (CDS) Nannochloropsis gaditana

Overview
NameEWM27877.1
Unique Namecds2795
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1266587..1266662 -
Alignment locationCM002459.1:1266279..1266397 -
Alignment locationCM002459.1:1265970..1266022 -
Alignment locationCM002459.1:1265592..1265712 -
Alignment locationCM002459.1:1265255..1265419 -
Alignment locationCM002459.1:1264981..1265058 -
Alignment locationCM002459.1:1264689..1264812 -
Alignment locationCM002459.1:1264352..1264502 -
Alignment locationCM002459.1:1264033..1264138 -
Alignment locationCM002459.1:1263705..1263830 -
Alignment locationCM002459.1:1263487..1263562 -
Alignment locationCM002459.1:1263044..1263267 -
Alignment locationCM002459.1:1262744..1262877 -
Alignment locationCM002459.1:1262447..1262561 -
Alignment locationCM002459.1:1262107..1262244 -
Alignment locationCM002459.1:1261877..1261957 -
Alignment locationCM002459.1:1261605..1261754 -
Alignment locationCM002459.1:1261140..1261488 -
Alignment locationCM002459.1:1260507..1261024 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27877.1
Productring u-box domain-containing protein
Orig transcript idgnl|cribi|Naga_100094g14.6812.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1266587..1266662 -
CM002459.1supercontigCM002459.1:1266279..1266397 -
CM002459.1supercontigCM002459.1:1265970..1266022 -
CM002459.1supercontigCM002459.1:1265592..1265712 -
CM002459.1supercontigCM002459.1:1265255..1265419 -
CM002459.1supercontigCM002459.1:1264981..1265058 -
CM002459.1supercontigCM002459.1:1264689..1264812 -
CM002459.1supercontigCM002459.1:1264352..1264502 -
CM002459.1supercontigCM002459.1:1264033..1264138 -
CM002459.1supercontigCM002459.1:1263705..1263830 -
CM002459.1supercontigCM002459.1:1263487..1263562 -
CM002459.1supercontigCM002459.1:1263044..1263267 -
CM002459.1supercontigCM002459.1:1262744..1262877 -
CM002459.1supercontigCM002459.1:1262447..1262561 -
CM002459.1supercontigCM002459.1:1262107..1262244 -
CM002459.1supercontigCM002459.1:1261877..1261957 -
CM002459.1supercontigCM002459.1:1261605..1261754 -
CM002459.1supercontigCM002459.1:1261140..1261488 -
CM002459.1supercontigCM002459.1:1260507..1261024 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR011989ARM-like
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR000225Armadillo
Homology
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|585110207|gb|EWM27877.1| (ring u-box domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1981.84 bits (5133), Expect = 0.000e+0
Identity = 967/967 (100.00%), Postives = 967/967 (100.00%), Query Frame = 0
Query:    1 MEMDCQMGEGPVRTCERGPYVYHFDSFFKGPSVPRLNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 967
            MEMDCQMGEGPVRTCERGPYVYHFDSFFKGPSVPRLNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR
Sbjct:    1 MEMDCQMGEGPVRTCERGPYVYHFDSFFKGPSVPRLNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 967          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|553179722|ref|XP_005852751.1| (Aardvark [Nannochloropsis gaditana CCMP526] >gi|422295782|gb|EKU23081.1| Aardvark [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1324.3 bits (3426), Expect = 0.000e+0
Identity = 739/884 (83.60%), Postives = 741/884 (83.82%), Query Frame = 0
Query:  145 MQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLS-----------------------------------GLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKA--------------------------TTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 967
            MQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLS                                   GLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIY    R     S    LD               R  QVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKA                          TTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILI                                            T+ SP   E +   QMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR
Sbjct:    1 MQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSDHWVLLALPHSSLFLPSLLPSLPASLAAPFPPSSTGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIY----RAGFPSS----LDVL-----------PPRMYQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKAWNTVTSPHHLPPLLSSLHSTLLSPTATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILI--------------------------------------------TDASPTAREMLL--QMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 819          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|553195429|ref|XP_005856144.1| (Aardvark [Nannochloropsis gaditana CCMP526] >gi|422292911|gb|EKU20212.1| Aardvark [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 758.059 bits (1956), Expect = 0.000e+0
Identity = 403/527 (76.47%), Postives = 404/527 (76.66%), Query Frame = 0
Query:  124 YSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQ--------------------------------ALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLS-----------------------------------GLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKA--------------------------TTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQS 557
            YSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQ                                ALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLS                                   GLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIY    R     S    LD               R  QVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKA                          TTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQ+
Sbjct:   44 YSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQDYRRRNRVQRPGSRFSNAFIPPRPPAFFLVLQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSDHWVLLALPHSSLFLPSLLPSLPASLAAPFPPSSTGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIY----RAGFPSS----LDVL-----------PPRMYQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKAWNTVTSPHHLPPLLSSLHSTLLSPTATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYLEVAILITDASPTAREMLLQN 551          

HSP 2 Score: 671.003 bits (1730), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:  628 LQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 967
            LQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR
Sbjct:  549 LQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDIGSAALGLIVSLAAQEMDSPGQIRTCQHASNLHTNGNGNGSHDQANGHAEVKAEGDGDIAASTLPVPSGPSYVRAVLSILRAVWKQIHSSSSVASSHSSYSSNVLDEKEITRLSALGILKWLTLVARDCAPDEVAILSDDASVHTMFEEVAGGLAISHPRSHSHAPSTLMLPPPPAPPSLLSQKRSRLSSLPNTAAASSSLIDTAEMHAKRLCLDLVASLPQRDLETSWPRACGAVVGGLQEGKGRGAVTLSALAGVVALAEGNEQNKSVLQGLGAGKGLSAVAAVVETRERELLTKAQEALR 888          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|299116170|emb|CBN76076.1| (Aardvark [Ectocarpus siliculosus])

HSP 1 Score: 114.775 bits (286), Expect = 3.282e-22
Identity = 81/256 (31.64%), Postives = 119/256 (46.48%), Query Frame = 0
Query:  127 QNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAM 382
            +NV  LGE   C LV  A++ F  D  IQ  G  A+  L +  E  R    Q  A EL T        D D+Q  AC A+  LA      + +LG AG CS V +S+  + D+  +Q +   A+  L +RHE N +R+  AGA + +   + +F  DL V      A+ +L++  A   + LG+   C ++   M A P  R+LQ   C A+A LA  +  N  RLV     + V +  +    D  I   G  A+
Sbjct:   96 ENVQLLGEANCCHLVEKALERFPNDASIQTQGCRAVTNLFSGEENIR-KLGQGRACELVTEALRSFPMDHDVQIEACGAVANLANNSKSNRIKLGRAGACSLVVKSMTTFSDNIDVQHASCVAVGNLANRHEENKRRLGAAGACSKVCAALASFQGDLGVQYMGCGAVGNLANSNAQNCTRLGEAGGCLLVAGAMNAFPSDRNLQHVGCAAVANLAINNDPNASRLVKAGGRVAVERALDIFSDDAEIQTRGEQAL 350          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|585112248|gb|EWM29674.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 100.523 bits (249), Expect = 7.244e-18
Identity = 135/581 (23.24%), Postives = 228/581 (39.24%), Query Frame = 0
Query:   95 MAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQR-LAEKATTILLNKTAFLLTSPSAQHKFHHHPPSVLANGSEPPPFQQAVGWNRENPAKERPTDLNGPTRDGDGMAEAQAFQALVRALATIPAESELEISASPALLFLLEVVNGRHPLLDDQPTASNFVAAMENYARDEDSQDIYL-EVAILITDASPTAREMLLQSGITRCVLDLMKRYLSVASLQEKCCMVLATLTEESPETVERVWNEQMMAALVDVVKAHPSQPVLQHFALSCLQNLAEDGSPLQRSSLITPSVLSLVALSLALHPTDEDI---GSAAL 670
            M   P   S Q Q   AIV      G     ++    L   GA R ++ +M+ +  D  +      AI  LA   E AR  F + S E +   +    TD + +   AC A+V L+ G+   +   G  G C  V  ++R +P D  +Q    +A+  L   ++ N +R      G +L   ++ F  D DV + A+ A+ +L+      RS  G+L  C V+ + M AHP    +QV+ C +I  L   + ENR RL  + A  +V      H  D  ++     A+ +L +     +R L E      +   A L T       FH   P V          +QAV   R    +E  T           +    A  A+V  +   P E+  +  A  A++ L    +     L         VAA++ +  D    +  L     +  DA  T   +    GI   ++  ++ +   + +  +        +  + E   R+ +      ++  +++ P+   +Q  A  C++N++ +    +R     P    +V  +L   PTDE I   G AAL
Sbjct:  374 MTSFPRHKSTQEQAAAAIVNL----GGNNRELKRA--LASAGATRAIMESMREWPSDPDVLKQCCWAILTLAVDDEIARRLFSEGSCEAVVAAMRACPTD-RLVLTKACAAIVNLSGGNQTIKTSFGAMGACDEVIRAMRAFPRDGPLQKQVCWAMKNLAGANDPNRKRFAPGLDGVVLA--VRNFGADRDVAEQALGALRTLAVDDENARS-FGELGACEVVCSAMRAHPSIAGIQVQSCGSIINLCGNNPENRKRLANMGACELVAAALRNHRTDRGVNEQACWAVTSLGVSTPENRRKLGEAGVCQCI--VATLRT-------FHADRPVV----------EQAVSAVRNLAIEEENT---------RKLGSEGACDAIVMVMRAYPGEATFQSKACAAVVNLAGGNSDNKRKLGLGGAVQAVVAALKAFPTDASVTEQGLWATKNMAVDAENTV--LFGNVGICEVIVAALRTFQQESRVLIQALAAAVNCSGGNDENKRRLGSLGACQEIIRSMQSFPTNATVQLQACWCIKNISNNSDENKRK--FGPVSGEMVVAALRAFPTDEGILREGKAAL 912          

HSP 2 Score: 76.2554 bits (186), Expect = 2.246e-10
Identity = 63/223 (28.25%), Postives = 98/223 (43.95%), Query Frame = 0
Query:  132 LGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRI--FEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRL 352
             GE+GAC +VV  M+ F  +  +   G  AI  +A     A      ++ + + T +  F  H   K  Q  A  A+V L   + E +  L  AG    + ES+R+WP D  +     +A+  L    E   +R+F  G+   +V  M+    D  VL  A  AI +LS      ++  G +  C  ++  M A P    LQ + C+A+  LA  +  NR R 
Sbjct:  318 FGEVGACEVVVPQMRAFPQEPSVAAEGCWAIRNMAIDDSLAAILAAYDACQAVVTAMTSFPRH---KSTQEQAAAAIVNLGGNNRELKRALASAGATRAIMESMREWPSDPDVLKQCCWAILTLAVDDEI-ARRLFSEGSCEAVVAAMRACPTDRLVLTKACAAIVNLSGGNQTIKTSFGAMGACDEVIRAMRAFPRDGPLQKQVCWAMKNLAGANDPNRKRF 536          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|585106158|gb|EWM24636.1| (ring finger [Nannochloropsis gaditana])

HSP 1 Score: 94.3597 bits (233), Expect = 6.101e-16
Identity = 96/394 (24.37%), Postives = 155/394 (39.34%), Query Frame = 0
Query:   36 LNPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRKGATRFPFLRRMAESPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLD----------CCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAEKATTILLNKTAFLLTSPSAQHK 419
            L  C ICL+ I +     +L  C+     H  CI+ WLE++ TCP CR+ A + P +  M + P + + Q +G   IV     +G           L E+GA  LV  A+                                            ++H+ D  + AA C A+  LA    E Q RL   G+C R+ E +  + +D  +Q  G  A+ +L   ++   +++  A A A ++  ++ F     V   A  AI SLS    + +  LG  +           C +L  V+  +   RD+      A+ K+A  + ENR R   +     V   FN++  D          +VAL     +A+   E  T +L    A +L S   +H+
Sbjct:  114 LKFCCICLDTIPDDEPCFNLFDCKHDTQTHKVCIDKWLEKHETCPLCRRDA-KDPVIGEMKKYPHNVAAQIRGCRFIV----FKGWQNAEFHR--HLIEIGAAELVANAL--------------------------------------------DIHSSDPSVLAACCAAIFVLAFSDRETQERLSSFGVCQRIVEGMLTFSEDIEVQTRGCGAIYSLSLSNKQIQRQLCLAKAPAAVLNALQRFMGQASVAMSAADAIMSLSCDNKLGQDLLGIGEGAEVQRGGKGACELLAEVIDRYSQDRDVIYAALDAVMKMAIDNPENRLRFGGVGMCSKVMDAFNQYQDDEVF------LLVALTAVYTMAENQRENQTRLLEGNKAEILMSTLWRHE 450          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|1085177110|gb|OGT65974.1| (hypothetical protein A3J38_10370 [Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9])

HSP 1 Score: 76.2554 bits (186), Expect = 2.661e-10
Identity = 74/316 (23.42%), Postives = 134/316 (42.41%), Query Frame = 0
Query:   86 ATRFPFLRRMAESP-LDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQ---RVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVALYMPLALAQRLAE 397
            A  +  + +  +SP +D  + +Q L AI   A           N TR   LG C  V+  +   S D  +Q+ G   + +LA+ +   ++     + E++  +    + D++D+Q     AL  LA GH    + +G       +  +L  +P D GIQ  G  A+ A+      NT    ++ EAGA  ++ +  +    D  +   A+ A+ +L     +  + L +   C ++  +M    + R++    C  I +L+     NR RL+A  A   V +     P D+ +   G  A++ L      A+R  E
Sbjct:  245 ALVYAAVTQFCQSPTIDRHIGFQALGAIANLALNHAA------NQTRFAALGVCEWVIKMLSVSSADVGLQVQGCLTVWSLASHNPTVKSRLGMRACEQV-CQALSRYADNRDVQYRGIGALCALAQGHVRNAHFVGACQGGVLICNALAAYPADRGIQEVGFGAIFAVGFSETGNTVNNVQLAEAGACQLVCRWAEYHPDDPALQVKALGAMLALVLHNPINHTALSEAGACELVCDIMRKRANMREVYESGCGLIWRLSMYSEHNRVRLMAAGACECVYEALTAFPHDMGLRPKGVLAVIYLSHYELAARRWGE 553          

HSP 2 Score: 68.1662 bits (165), Expect = 7.802e-8
Identity = 74/332 (22.29%), Postives = 130/332 (39.16%), Query Frame = 0
Query:  104 VQYQGLLAIVKT---ASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGAR---------------------------------------ANFQQESAE----ELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPD----DYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVAL 385
            +Q Q L  +++    A V G  +  + N  +LG++G C  +   +  +   + +Q  GLE I  LA+  E                                          A+ QQ+  E    EL     + + +++ LQ  AC A+  LA      + +    G+C+ V  ++ Q+      D  I    L A+  L   H AN  R    G    +++M+     D+ +       ++SL+S     +S LG   C +V  A ++ + D RD+Q +   A+  LA  H  N H + A +  +++      +P D  I   G  A+ A+
Sbjct:   76 IQNQTLAELIQCGGLAVVSGLSRNHVGNQAQLGDMGFCEWICQLLPNYPEHQLLQRGGLETIRNLASHRENQDRFGRLVACTSVCGLLRQYADDVQLQTIGLSAIWDLTLNCAHNQQQCIEMQVCELIAAAMQRYPEERMLQLKACGAIWCLAANQQAVKEQFAALGVCALVYAAVTQFCQSPTIDRHIGFQALGAIANLALNHAANQTRFAALGVCEWVIKMLSVSSADVGLQVQGCLTVWSLASHNPTVKSRLGMRACEQVCQA-LSRYADNRDVQYRGIGALCALAQGHVRNAHFVGACQGGVLICNALAAYPADRGIQEVGFGAIFAV 406          

HSP 3 Score: 66.2402 bits (160), Expect = 3.118e-7
Identity = 68/262 (25.95%), Postives = 110/262 (41.98%), Query Frame = 0
Query:  104 VQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARAN---FQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDLDVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAH------PDARDLQVKCCFAIAKLAWQHAENRHRLVALK 356
            VQY+G+ A+   A      Q  ++N   +G      L+  A+  +  DR IQ +G  AI A+     G   N     +  A +L  R  E H DD  LQ  A  A++ L   +P     L  AG C  V + +R+  +   +  SG   +  L    E N  R+  AGA   + + +  F  D+ +    + A+  LS      R   G+L  C V+  +++ +      P    + V+ C A++ L    A N+ R + L 
Sbjct:  351 VQYRGIGALCALA------QGHVRNAHFVGACQGGVLICNALAAYPADRGIQEVGFGAIFAVGFSETGNTVNNVQLAEAGACQLVCRWAEYHPDDPALQVKALGAMLALVLHNPINHTALSEAGACELVCDIMRKRANMREVYESGCGLIWRLSMYSEHNRVRLMAAGACECVYEALTAFPHDMGLRPKGVLAVIYLSHYELAARR-WGELGMCHVIHEILSHYVGIPVGPMREAVGVRICQAVSALCGDPA-NQQRFIDLN 604          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|873235320|emb|CEM00707.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 69.707 bits (169), Expect = 2.373e-8
Identity = 63/267 (23.60%), Postives = 110/267 (41.20%), Query Frame = 0
Query:  123 QYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIEALAAKSEGARANFQQESAEELFTRIFEMHTDDKDLQAAACQALVGLATGHPEWQNRLGLAGLCSRVTESLRQWPDDYGIQLSGLYALNALLSRHEANTQRVFEAGAGAILVQMMKTFWRDL----DVLDGAITAIYSLSSRGAVERSCLGQLDCCRVLLAVMAAHPDARDLQVKCCFAIAKLAWQHAENRHRLVALKAALVVTQIFNKHPFDVAIHVAGSAAMVAL 385
            +Y+ Q + + G+LGA   V  A+   +    +Q +G  A+ +L  +    +   ++ S+ +      + + ++  +Q   C AL  +       Q + G  G    +T+SLR WPDD  +Q  G  A+  +    E  T+R  E G     +Q + T  + L    DV      A++SL    A      G+      +L  M  H    +L  K C A+  L +    NR R +A      +      +P D+ + + G  A+  L
Sbjct: 1151 KYNTQRIEQAGQLGAVEAVTRALLKHADREDLQWIGCGALFSLCFQVAPNKTRAREASSIKAVLNAIQHNPNNLQIQIWGCGALFSMTRHCLPNQLQAGQHGALRILTQSLRMWPDDPHVQWHGYGAIWCMCFSDE--TRRAKEEGRLEGTLQTVVTNLQKLQLHPDVQLWGCAAVWSLCRHNAGNSVAAGKAGAVEAILGAMRTHTKKAELHWKACGALFAL-FAEPSNRQRALAGNGVSGLADALQSYPQDLELQIWGCGALWRL 1414          
BLAST of EWM27877.1 vs. NCBI_GenBank
Match: gi|1191648577|gb|OTG00550.1| (putative zinc finger, RING/FYVE/PHD-type [Helianthus annuus])

HSP 1 Score: 63.929 bits (154), Expect = 1.583e-7
Identity = 39/138 (28.26%), Postives = 65/138 (47.10%), Query Frame = 0
Query:   37 NPCVICLEPIEEGADLTSLLGCEDRHHFHANCINSWLERNATCPTCRK----GATRFPFLR----RMAE---SPLDPSVQYQGLLAIVKTASVEGPPQYSIQNVTRLGELGACRLVVTAMQTFSGDRCIQLMGLEAIE 163
            N C +CL   E+G  + +L  C  +HHFHA CI+ WL    +CP CR     G T  P  R    R+A+   +P  P ++    + + K  + +G  Q S +       LG+ R +++  ++   +      G+E +E
Sbjct:  108 NECAVCLSSFEDGQMIRALPNC--KHHFHAECIDKWLGSQTSCPICRHEVELGPTLLPLPREPSTRLADGVSAPSAPPLEPTSFVGVAKEGTSDGMAQSSSKVTGTSSRLGSFRRMISMDRSSRRNNSCTQDGIEDLE 243          
The following BLAST results are available for this feature:
BLAST of EWM27877.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585110207|gb|EWM27877.1|0.000e+0100.00ring u-box domain-containing protein [Nannochlorop... [more]
gi|553179722|ref|XP_005852751.1|0.000e+083.60Aardvark [Nannochloropsis gaditana CCMP526] >gi|42... [more]
gi|553195429|ref|XP_005856144.1|0.000e+076.47Aardvark [Nannochloropsis gaditana CCMP526] >gi|42... [more]
gi|299116170|emb|CBN76076.1|3.282e-2231.64Aardvark [Ectocarpus siliculosus][more]
gi|585112248|gb|EWM29674.1|7.244e-1823.24conserved unknown protein [Nannochloropsis gaditan... [more]
gi|585106158|gb|EWM24636.1|6.101e-1624.37ring finger [Nannochloropsis gaditana][more]
gi|1085177110|gb|OGT65974.1|2.661e-1023.42hypothetical protein A3J38_10370 [Gammaproteobacte... [more]
gi|873235320|emb|CEM00707.1|2.373e-823.60unnamed protein product [Vitrella brassicaformis C... [more]
gi|1191648577|gb|OTG00550.1|1.583e-728.26putative zinc finger, RING/FYVE/PHD-type [Helianth... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2803rna2803Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications