EWM27880.1, cds2788 (CDS) Nannochloropsis gaditana

Overview
NameEWM27880.1
Unique Namecds2788
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1239789..1239791 +
Alignment locationCM002459.1:1239955..1240036 +
Alignment locationCM002459.1:1240283..1240426 +
Alignment locationCM002459.1:1240601..1240683 +
Alignment locationCM002459.1:1240901..1240992 +
Alignment locationCM002459.1:1241107..1241222 +
Alignment locationCM002459.1:1241441..1241520 +
Alignment locationCM002459.1:1241815..1241916 +
Alignment locationCM002459.1:1242128..1242217 +
Alignment locationCM002459.1:1242365..1242460 +
Alignment locationCM002459.1:1242642..1242698 +
Alignment locationCM002459.1:1242876..1242989 +
Alignment locationCM002459.1:1243083..1243211 +
Alignment locationCM002459.1:1243388..1243627 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27880.1
Productatpase-like protein
Orig transcript idgnl|cribi|Naga_100323g6.1691.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1239789..1239791 +
CM002459.1supercontigCM002459.1:1239955..1240036 +
CM002459.1supercontigCM002459.1:1240283..1240426 +
CM002459.1supercontigCM002459.1:1240601..1240683 +
CM002459.1supercontigCM002459.1:1240901..1240992 +
CM002459.1supercontigCM002459.1:1241107..1241222 +
CM002459.1supercontigCM002459.1:1241441..1241520 +
CM002459.1supercontigCM002459.1:1241815..1241916 +
CM002459.1supercontigCM002459.1:1242128..1242217 +
CM002459.1supercontigCM002459.1:1242365..1242460 +
CM002459.1supercontigCM002459.1:1242642..1242698 +
CM002459.1supercontigCM002459.1:1242876..1242989 +
CM002459.1supercontigCM002459.1:1243083..1243211 +
CM002459.1supercontigCM002459.1:1243388..1243627 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003682chromatin binding
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0031491nucleosome binding
GO:0003677DNA binding
GO:0003676nucleic acid binding
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0043044ATP-dependent chromatin remodeling
GO:0006338chromatin remodeling
Vocabulary: Cellular Component
TermDefinition
GO:0016589NURF complex
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR017877Myb-like_dom
IPR029915ISWI
IPR015194ISWI_HAND-dom
IPR009057Homeodomain-like
IPR015195SLIDE
Homology
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|585110211|gb|EWM27880.1| (atpase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 966.066 bits (2496), Expect = 0.000e+0
Identity = 475/475 (100.00%), Postives = 475/475 (100.00%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDGLVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIEREYGEAEGGSGRKSYSSQRRNKRKREEEGEAAGEDEEDEDEMEIEDDEMEDEGEEDYGQDEESLASGVVSESTQKSTRSKEGSGMHKKKWSY 475
            MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDGLVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIEREYGEAEGGSGRKSYSSQRRNKRKREEEGEAAGEDEEDEDEMEIEDDEMEDEGEEDYGQDEESLASGVVSESTQKSTRSKEGSGMHKKKWSY
Sbjct:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDGLVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIEREYGEAEGGSGRKSYSSQRRNKRKREEEGEAAGEDEEDEDEMEIEDDEMEDEGEEDYGQDEESLASGVVSESTQKSTRSKEGSGMHKKKWSY 475          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|676388043|ref|XP_009037300.1| (hypothetical protein AURANDRAFT_26802 [Aureococcus anophagefferens] >gi|323452052|gb|EGB07927.1| hypothetical protein AURANDRAFT_26802 [Aureococcus anophagefferens])

HSP 1 Score: 294.278 bits (752), Expect = 3.698e-86
Identity = 169/390 (43.33%), Postives = 241/390 (61.79%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTE-ERNLFEFEGKDYSN-KRKDGLVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPR-RLVLPEH--QFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGADEI  +  K  TDEDID +L++GE +T+EQ +K Q +VQHNLA F+L    E E +LF FEG++Y   K   GL+ ++ QRER+   NYDVD Y+R A++     +GDK    + PR R   P H  QFFNR  L+ L  KE  LA K+        E RA    A  + A                    ++LP +E   ++ L++EGF +W+RKDLR  + ++ER GR D  ++ RETA ETGK + +V  Y+ TF  + K++ +W+ L D++ +GE R+ R+++I+ AL  KVA H  P + L +NY        +G++WT+EED FL+ +MH + YGNWERIR+EIR + +F FDWFFKSR+ QELN+R D LI+L+E+E
Sbjct:  599 MVRFGADEIFASKAKTITDEDIDTLLKRGEERTQEQASKIQSDVQHNLANFSLTTMEEPEGSLFNFEGENYKGAKGGGGLMINLPQRERK--RNYDVDEYFRDALR-----QGDKPAVAREPRKRRGPPMHDFQFFNRAELEVLLAKEDELAGKKH-------EARADEMEATLETA--------------------YELPVKEAVRKERLLKEGFGDWTRKDLRAFLNAMERHGRGDVDAVARETANETGKTDADVRRYHATFWKKHKDIADWERLVDKVEKGEKRLQRSQEIRSALADKVARHPKPWECLPINYGAS-----RGKVWTEEEDAFLVNMMHTYGYGNWERIRVEIRNAWQFNFDWFFKSRNAQELNRRADLLIRLVEKE 949          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|299115214|emb|CBN74047.1| (Ci-SWI/SNF [Ectocarpus siliculosus])

HSP 1 Score: 287.345 bits (734), Expect = 2.814e-83
Identity = 172/408 (42.16%), Postives = 246/408 (60.29%), Query Frame = 0
Query:    1 MVKFGADEILNAA-GKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDY---SNKRKDGLVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIEREYGEAE----GGSGRKSYSS 400
            MVKFGADEIL     +G TDE ID +LRKGE KTEE  A+ Q+++QHNL  F + D+ +  N F FEG D+         G   ++  R+R+   NYDV+ YYR+ M       G      ++ + + + + QF++R  L+ L  KE  LA ++ A    IKELR   K    ++ A    E+ A  LE+  +    +L  +EQ+++K L++  F +W+RKD R  V + ER GR D  +++R+   ET K E  V  Y   F  R +EL +   + ++I +GE RI R+KQI+ A++ KV+ H NP   LT+NY GG     +G+++T+EED FLL +MH++ YGNWE IRMEIRK+ +F FDWFFKSR+  EL +RGDTLI+L+E+E  E E    GG  RKS+SS
Sbjct:  660 MVKFGADEILRMDDSQGLTDESIDELLRKGEEKTEETNARIQKDMQHNLLTFKI-DEEDGINTFLFEGSDHREGGAANGTGAFINLPTRQRKS--NYDVNEYYRARMDSNKNIPG-----VRKRKGITMHDFQFYDREALEALQTKEHDLADRKNAIINEIKELRTRCK----RMEAHGGEEEHAAQLEKTASG--LELSSKEQDQKKKLIDNAFGDWNRKDFRAFVAATERHGRDDTEAVVRDVCLETAKTEENVRKYIKVFWKRCRELADHPKIMEKIEKGEKRIFRSKQIRSAIDSKVSRHANPWSDLTINYYGG-----KGKVFTEEEDAFLLNMMHRYGYGNWEVIRMEIRKAWQFRFDWFFKSRNAAELQRRGDTLIRLVEKENEELETTGNGGKKRKSFSS 1048          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|1173929406|gb|OQR82644.1| (hypothetical protein ACHHYP_15723 [Achlya hypogyna])

HSP 1 Score: 266.159 bits (679), Expect = 1.952e-75
Identity = 164/392 (41.84%), Postives = 222/392 (56.63%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDG------LVFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEY-GNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGADEI NA G   TD+DID IL KGE +TE   AK   ++QHNL  F+L   T   +L++FEG++++    D           +  RER+   NYDVD YYR         +  K     +P+  V+ + QFF R ++  L +K   L   R+     +KE +A    A A+   GE  E  ++ LE EL      LP E+    +AL  EGF +WSR+DL+  + S ERFGRAD+ ++  E A    KD   V  YYD F AR  EL ++Q   DRI RGE RI RN  IKEAL  KVA +KNP + + L Y GG     + + +T +ED+FL+ +MHK    G+W  I+ +IR + +F FDWFFKSR+  EL KRG+ L KLIE+E
Sbjct:  663 MVRFGADEIFNAKGSMITDDDIDAILAKGEERTEAMKAKVADDMQHNLKNFSL---TSVSSLYDFEGENFAKDAADAGGVLPSTFIALPARERKK--NYDVDEYYRQQTGQTKPKKSKKPDEENKPKVPVVHDFQFFQRDQMTALLQKRYDLEFARKELAKLVKEAKADE--ARAKSDDGEPCEPKSKALEAELE--AMVLPAEDVAALEALEAEGFGDWSRRDLKQFIASCERFGRADKDAVCLEVATLLAKDVARVAEYYDVFWARAAELEDYQKYMDRIERGEKRIQRNLAIKEALAAKVARYKNPWRDMKLAYPGGY----KSKGFTMDEDVFLICMMHKHGVGGDWGAIKEDIRMAWQFRFDWFFKSRTVLELQKRGEFLTKLIEKE 1041          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|669149880|ref|XP_008610502.1| (hypothetical protein SDRG_06499 [Saprolegnia diclina VS20] >gi|530737498|gb|EQC35740.1| hypothetical protein SDRG_06499 [Saprolegnia diclina VS20])

HSP 1 Score: 255.758 bits (652), Expect = 8.904e-72
Identity = 163/392 (41.58%), Postives = 224/392 (57.14%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYS-NKRKDGLVFD-----MGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEY-GNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGADEI NA G   TD+DID IL KGE +TE   AK   ++QHNLA F+L   T   +L++FEG++++ +  + G V       +  RER+   NYDVD YYR         +  K     +P+  V+ + QFF+R R+  L +K   +   R+     IKE +A       Q    E  +  ++ LE EL +   D    +  E +AL  +GF +WSR+DL+  V S ERFGR+D+ ++  E A    KD   V  YYD F AR  EL  +Q   DRI RGE RI RN  IKEAL  KVA +KNP + + L Y GG     + + +T +ED+FL+ +MHK    G+W  I+ +IRK+ +F FDWFFKSR+  EL KRG+ L KLIE+E
Sbjct:  661 MVRFGADEIFNAKGSMITDDDIDAILAKGEERTEAMKAKVVDDMQHNLANFSL---TSVSSLYDFEGENFAKDAAESGSVLPSTFIALPARERKK--NYDVDEYYRQQTGQTKPKKTKKPDEENKPKVPVVHDFQFFDRERMTALLQKRYDVEFARKEHIKLIKEAKADE-----QKQKLEGDDLKSKQLEAELENMVMD--AADVTELEALEADGFGDWSRRDLKQFVASCERFGRSDKDAVCLEVATLLVKDVARVAEYYDVFWARGTELEEYQKYMDRIERGEKRIQRNLAIKEALASKVARYKNPWRDMKLTYPGG----YKSKGFTMDEDVFLICMMHKHGVGGDWVAIKEDIRKAWQFRFDWFFKSRTILELQKRGEFLTKLIEKE 1036          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|224001476|ref|XP_002290410.1| (atpase-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220973832|gb|EED92162.1| atpase-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 248.825 bits (634), Expect = 3.564e-70
Identity = 147/392 (37.50%), Postives = 230/392 (58.67%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDD--TEERNLFEFEGKDYSNKRK-DGLVFDMGQRERRPTMNYDVDSYYRSAMKGG--TGARGDKEGSTKRPRR--LVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNY---QGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLI 382
            MVKFGAD+I++     +TDEDID ++ KGE +TE+  A+ Q + QHNLA FTL  D  T  ++ F+F G++Y +K+K D +  DMG RER+  + YDV+ Y+R  M  G  +G +     +  R +R  L   + Q +NR RL++L  +E+ LA  ++                      G+  E++A ++E+ L+  +F L   EQ ER+ L+ EGF +W+RKD +    ++E+ GR + A+I+ E   ETGK + ++  YY  F    + L +W  + D+I +GE +I R ++IK+ ++ KV    +P   LT ++   Q   G   +G  +  EED FLL +MH+  YG   RI++EIR++ +F F+WFFKSRSPQE+ KR D LIK++
Sbjct:  478 MVKFGADQIISGKKGTYTDEDIDALIAKGEKRTEDMQAQLQTDAQHNLASFTLSGDMETSTKDTFDFAGENYRDKKKGDNVFIDMGTRERKRAV-YDVNEYFRETMNTGDSSGMKAHAADAKARKKRKGLYAQDFQLYNRDRLEELAARERELAQSKEDH-------------------LGQIMEEIA-EMEKMLD--QFVLTQPEQAEREQLLSEGFADWNRKDFKCFCNALEKHGRYNLATIIEEIMQETGKADGDIKRYYVAFWLHYRRLTDWNKIIDKIEKGERKIIRLREIKDIIQEKVLEQHSPWDLLTYSWPIMQFKYGPGNRGFSYRQEEDAFLLTMMHRHGYGAARRIQLEIRRAWQFRFNWFFKSRSPQEIQKRCDLLIKVV 846          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|1173958921|gb|OQS05212.1| (hypothetical protein THRCLA_02618 [Thraustotheca clavata])

HSP 1 Score: 249.595 bits (636), Expect = 1.460e-69
Identity = 158/390 (40.51%), Postives = 223/390 (57.18%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDGLV----FDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEY-GNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGADEI NA G   TD+DID IL KGE +TE   AK   ++QHNL  F+L   T   +L++FEG++++    D ++      +  RER+   NYDVD YYR         +  K     +P+  ++ + QF+ R ++  L +K   L   R+     IKE +A       Q    E  +  ++ LE EL   +  +   + E  + L  EGF +WSR+DL+  + S ERFGR ++ +I ++ A   GKD N V  YYD F +R  EL ++Q   DRI RGE RI RN  IKEAL  KVA +KNP + + L Y GG     + + +T +EDIFL+ +MHK    G+W  I+ +IRK+ +F FDWFFKSR+  EL KRG+ L KLIE+E
Sbjct:  654 MVRFGADEIFNAKGSMITDDDIDAILAKGEERTEAMKAKVADDMQHNLKNFSL---TSVSSLYDFEGENFAKDATDSVLPSTFIALPARERKK--NYDVDEYYRQQTGQTKTKKTKKSEEENKPKVPIVHDFQFYQRDKMTALLQKRYDLEFARKEHIKQIKEAKAEE-----QKQKLEGDDLKSKQLEAELE--KMVMNKADLEALEELEREGFGDWSRRDLKHFIASCERFGRNEKDAICQDVAVVLGKDINRVIQYYDVFWSRGSELEDYQKYMDRIERGERRIQRNLAIKEALAAKVARYKNPWRDMKLTYPGG----YKSKGFTMDEDIFLICMMHKHGVGGDWVAIKEDIRKAWQFRFDWFFKSRTVLELQKRGEFLTKLIEKE 1027          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|673039085|ref|XP_008873503.1| (hypothetical protein H310_09257 [Aphanomyces invadans] >gi|574470933|gb|ETV97942.1| hypothetical protein H310_09257 [Aphanomyces invadans])

HSP 1 Score: 248.054 bits (632), Expect = 7.161e-69
Identity = 155/396 (39.14%), Postives = 229/396 (57.83%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTEERNLFEFEGKDYSNKRKDGL---------VFDMGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTAR-MKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYG-NWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGADEI NA G   TD+DID IL KGE +TE   AK  +++QHNL  F+L   +   +L+EFEG+ ++   KD L            +  R+R+   NYDVD YYR         +  K     RP+  ++ + QFF++ ++  L +K   +  +R+ +   IKE ++G+      L   EA +D  + LE +L     ++P  ++   +AL  +GF +W+R+DL+ LV S E+FGR D+ +I  +TA   GK+   V  YYD F AR   EL  W    +RI +GE R+ RN+ +KEAL  K A +KNP + + L Y GG     + + +T +ED+FL+ +MH  E+G  W  I+ +IRK+ +F FDWFFKSR+  EL KRG+ L KLIE+E
Sbjct:  668 MVRFGADEIFNAKGSMITDDDIDAILAKGEERTEGMKAKINEDMQHNLKNFSL---SSVSSLYEFEGEKFA---KDALETGGVMPSTFIALPARQRKT--NYDVDEYYRQQTGQTKPKKVKKPDEENRPKVAIVHDFQFFDKDKMIPLLQKRLDVEFQRKEQLKLIKEAKSGK------LDDDEA-KDKLKQLEADLEG--MEMPEVDRLALEALEHDGFGDWTRRDLKQLVASCEKFGRHDKEAICADTATALGKEITRVAEYYDVFWARGADELEEWSKFIERIEKGEKRLTRNQAVKEALAAKCAMYKNPWRDMKLQYPGGY----KSKGFTHDEDVFLVCMMH--EHGFEWNAIKDDIRKAWQFRFDWFFKSRTIVELQKRGEFLTKLIEKE 1040          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|1072224631|gb|OEU09380.1| (SNF2_N-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 243.047 bits (619), Expect = 9.059e-68
Identity = 149/397 (37.53%), Postives = 230/397 (57.93%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDDTE-ERNLFEFEGKDYSNKRKD-GLVFDMGQRERRPTMNYDVDSYYRSAMK-----GGTGARGDKEGSTKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGEAPEDVARDLEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPL-----QTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKFEYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIERE 385
            MV+FGAD+IL+  G  ++DEDID ++ KGE KT    AK Q + QHNLA F LL D + +++ F F+GK+Y +  K  G   ++ QRER+   NYDV+ Y+R  M      GG  A      S KR +   L + Q FNR RL ++ EKE+ LA +++ +   IK++              E PE     +E+EL +  F L   E  E+K L  EGF +W++KD ++  T +ER GR D + +  +   ET KD  ++  Y+ +F    + + + + + +RI++GE +I R +QI++A++ KV  H   L       + +NY    G   +GR + +EED FL+ +M+++ YG  ERIRM IR++ +F FDW+FKSRS  E+ KR D ++K+IE+E
Sbjct:  479 MVRFGADQILSGKGGTYSDEDIDALIAKGEEKTSAIQAKLQTDAQHNLADFQLLGDGDGDKDTFSFDGKNYRDSTKTVGNFINLPQRERK--RNYDVNEYFRDTMNPGGPTGGMKAHAADAASKKRKKGPALHDFQLFNRERLNEIAEKERQLAAQKENQ---IKKI-------------NEFPE-----MEKELVN--FKLSAAENSEKKRLQAEGFPDWNKKDFKSFCTGLERHGRYDFSRVASDVHNETNKDPKDIERYFVSFWTNYRRIEDHKKIMERIQKGERKILRLRQIRDAIQEKVERHLEDLIEHSWSKMKINY----GTGTKGRAYQEEEDAFLVAMMYRYGYGAAERIRMSIRRAWQFRFDWYFKSRSALEIQKRCDVIVKIIEKE 846          
BLAST of EWM27880.1 vs. NCBI_GenBank
Match: gi|953490328|emb|CEG46649.1| (imitation switch isoform alias nucleosome remodeling factor 140 kda subunit [Plasmopara halstedii])

HSP 1 Score: 241.891 bits (616), Expect = 8.774e-67
Identity = 161/413 (38.98%), Postives = 236/413 (57.14%), Query Frame = 0
Query:    1 MVKFGADEILNAAGKGFTDEDIDLILRKGEAKTEEQTAKYQQNVQHNLAKFTLLDD---TEERNLFEFEGKDYSNKRKDGLVFD-----MGQRERRPTMNYDVDSYYRSAMKGGTGARGDKEGS--TKRPRRLVLPEHQFFNRPRLQQLHEKEQALALKRQARWAFIKELRAGRKAAVAQLAAGE--APEDVARD-----LEEELNDGRFDLPPEEQEERKALMEEGFKNWSRKDLRTLVTSIERFGRADRASILRETAAETGKDENEVTAYYDTFTARMKELPNWQALQDRIRRGEARIARNKQIKEALERKVAGHKNPLQTLTLNYQGGIGKQQQGRLWTDEEDIFLLILMHKF-EYGNWERIRMEIRKSEKFCFDWFFKSRSPQELNKRGDTLIKLIEREYGEAEGGSGR 395
            MV+FGADEI NA G   TD+DID IL +GE +TE    K   ++QHNLA F+L  D       +L+EFEG+ +S    +G V       + QRER+   NY+ D YYR         +  K GS   K P   V+ ++QFF + R+  L  K+  +  +R+     IKE +A      A+ A GE  A E+   D     LE+ELN+   D    + +E   L + GF +W+R+DL+  +TS ER+GRAD+A +  E +   GKD  +V  YYDTF +R  EL +     ++I RGE R+ RN+ +KEAL RK + + +PL+ + L+Y  G     + + +  EED+FL+++M+K+    +W  IR EIRK+ +F F+WFFKSR+  EL KRG+ L ++IERE  E +  S +
Sbjct:  607 MVRFGADEIFNARGSMITDDDIDAILARGEERTETMKDKIAADMQHNLANFSLSGDNGNASVSSLYEFEGEVFSKDTNNGHVLPSTFIALPQRERKS--NYNEDEYYRQQTGLSKPKKPKKSGSDAAKVP---VVHDYQFFQQERMVALLTKKTVVENRRKELTRLIKEAKADEARIKARKAKGEDSAEEEEGDDTRSAALEKELNETEMD--ATDLKELDELEKAGFGDWTRRDLKQFITSCERYGRADKARVCEEVSLVLGKDRMQVERYYDTFWSRFTELKDHAKYIEKIERGEKRLERNEVVKEALARKCSRYSHPLRDMRLHYPAGY----KSKGYILEEDVFLVVMMNKYGPLEHWGEIRDEIRKAWQFRFNWFFKSRTIGELQKRGELLTRMIERENDELKSKSTK 1008          
The following BLAST results are available for this feature:
BLAST of EWM27880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110211|gb|EWM27880.1|0.000e+0100.00atpase-like protein [Nannochloropsis gaditana][more]
gi|676388043|ref|XP_009037300.1|3.698e-8643.33hypothetical protein AURANDRAFT_26802 [Aureococcus... [more]
gi|299115214|emb|CBN74047.1|2.814e-8342.16Ci-SWI/SNF [Ectocarpus siliculosus][more]
gi|1173929406|gb|OQR82644.1|1.952e-7541.84hypothetical protein ACHHYP_15723 [Achlya hypogyna... [more]
gi|669149880|ref|XP_008610502.1|8.904e-7241.58hypothetical protein SDRG_06499 [Saprolegnia dicli... [more]
gi|224001476|ref|XP_002290410.1|3.564e-7037.50atpase-like protein, partial [Thalassiosira pseudo... [more]
gi|1173958921|gb|OQS05212.1|1.460e-6940.51hypothetical protein THRCLA_02618 [Thraustotheca c... [more]
gi|673039085|ref|XP_008873503.1|7.161e-6939.14hypothetical protein H310_09257 [Aphanomyces invad... [more]
gi|1072224631|gb|OEU09380.1|9.059e-6837.53SNF2_N-domain-containing protein [Fragilariopsis c... [more]
gi|953490328|emb|CEG46649.1|8.774e-6738.98imitation switch isoform alias nucleosome remodeli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2796rna2796Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications