EWM27903.1, cds2771 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|585110241|gb|EWM27903.1| (regulator of nonsense transcripts 2 [Nannochloropsis gaditana]) HSP 1 Score: 1558.5 bits (4034), Expect = 0.000e+0 Identity = 770/770 (100.00%), Postives = 770/770 (100.00%), Query Frame = 0
Query: 1 MNEISMFSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK 770
MNEISMFSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK
Sbjct: 1 MNEISMFSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK 770
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|585110242|gb|EWM27904.1| (regulator of nonsense transcripts 2 [Nannochloropsis gaditana]) HSP 1 Score: 1258.43 bits (3255), Expect = 0.000e+0 Identity = 625/625 (100.00%), Postives = 625/625 (100.00%), Query Frame = 0
Query: 146 MERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK 770
MERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK
Sbjct: 1 MERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTLPKLSHQEQGKGGKEGGSGLRFCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRGGEGRGGGRGVGRGSGGSGPSHGREEDHRGDRGLPPGGLGFFNRK 625
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|553188061|ref|XP_005854729.1| (regulator of nonsense transcripts 2, partial [Nannochloropsis gaditana CCMP526] >gi|422294332|gb|EKU21632.1| regulator of nonsense transcripts 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 701.819 bits (1810), Expect = 0.000e+0 Identity = 336/338 (99.41%), Postives = 338/338 (100.00%), Query Frame = 0
Query: 78 KRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYV 415
KRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLE+CGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPL+AYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYV
Sbjct: 82 KRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLESCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLYAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAGGRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYV 419
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689855|gb|AQK53781.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 355.14 bits (910), Expect = 2.039e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 167 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 862
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689838|gb|AQK53764.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 355.14 bits (910), Expect = 2.085e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 168 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 863
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1040920883|ref|XP_017222675.1| (PREDICTED: regulator of nonsense transcripts UPF2 [Daucus carota subsp. sativus] >gi|1021027106|gb|KZM84893.1| hypothetical protein DCAR_027685 [Daucus carota subsp. sativus]) HSP 1 Score: 361.688 bits (927), Expect = 3.294e-106 Identity = 244/739 (33.02%), Postives = 370/739 (50.07%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLLELLEDKGRAGGRDLVQRFATWEEAQAAVEAVEREEWERK------------------AGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSES----GSESEEEEEEEEEEEEEEEEEEEEEVRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL---PKLSHQEQGKGGKEGGSGLR-----------FCMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVE-----------------GGEGGEDGWGWEEEG 691
F ++ S ++L+ LF+VP S ELLP YSR+VATLS + ++ L++ L+ EF + L K+ +++ K + ++++GEL KFKI P + F+ L ACL+ F+ HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LDP L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW SE E + L+ ++ RGK+ +H +A + AGL +YH+ AVS+VDEVLEE++ GLE G + R +A R LGE YNY + +++FDTLYL L +GH LDPP D FR +VI LL+ CG +G K KL FL +FQRY+ +G VP D E D+ DL A R + R+++ EE AA+ + EE ERK +G G ++ G ++ G VK E E +T ++ S++ G EEE +EE +E + EE+ + +E++ V V ++ T+ D EA F++ F +++ S+E RK +RA T NM++P + P H +G G+ G L ++KRG+ K + KE+ +P ++L + + A EE+ +K+ VL+Y E GG G W+ G
Sbjct: 496 FCYVNSKSSRKKLVRALFSVPRTSLELLPYYSRMVATLSTCMKDVSSMLIQLLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETAVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPER--SARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPW--------------SECEPYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRVGLELNDYGMQQRR----IAHMRFLGELYNYEHVDSSVIFDTLYLILVFGHGTAEEDV----------------------LDPPEDCFRIRMVITLLETCGHYF-DRGSSK--RKLDRFLIHFQRYILSKGAVPLDIEFDLQDLF--------ADLRPNMTRYSSVEELDAALAVL--EEHERKNLSEKNNTEKHLDTEKVSSGQLGRSSVNGQMLSDG-VKANGEAHEEATEDTDTDSGSDTIGPAGHYDEEELDEENHDETHDSEEDYSDGGDNASDEDDEVRVRQKI---TKVDPLEEADFDREFRALMQESLESRKLELRARPTL----NMMIPMNIFEGPTKDHHGRGVEGESGDDTLDEEAGGSKEVRVKVLVKRGS--KQQTKEMFIPRDSTLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEELNGLGNQPNSWIQSGGGRASSRGHAWDGHG 1169
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689829|gb|AQK53755.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 354.369 bits (908), Expect = 4.946e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 187 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 882
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689843|gb|AQK53769.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 355.14 bits (910), Expect = 5.222e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 221 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 916
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689857|gb|AQK53783.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 354.755 bits (909), Expect = 5.293e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 195 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 890
BLAST of EWM27903.1 vs. NCBI_GenBank
Match: gi|1142689845|gb|AQK53771.1| (Regulator of nonsense transcripts UPF2 [Zea mays]) HSP 1 Score: 355.91 bits (912), Expect = 7.380e-106 Identity = 256/776 (32.99%), Postives = 384/776 (49.48%), Query Frame = 0
Query: 7 FSALSLLPSLQRLLALLFAVPWQSQELLPQYSRVVATLSPLLPEMGPSLVRELQREFRYFLRKRPNSHLDMKRKTVKYVGELVKFKICPPIVPFTFLNACLEAFSRHNVELACALLETCGRFLFLTPHTHTRLKGYLSTMERLKRVKSLDPTLEVLIDNACLICNPPSQRTTTRQTVLLPPLHAYLRFLLFERLSPKNTDDVLYSLRKFPWKTPRGGAPAEATGLSELEVFFLRSVLQAARGKFHALHALADVVAGLGKYHENMAVSMVDEVLEELKRGLETAG-GRRDRDTQGFLALSRLLGEFYNYNLIPHALVFDTLYLFLHYGHEVPPHPSLPSSIPPSFPPYVTHDPRILTPLDPPADTFRCHLVINLLQACGPLLAGKGHEKVRGKLSLFLTYFQRYLFCRGYVPPDTENDVLDLL-ELLEDKGRAGG-RDLVQRFATWEEAQ--AAVEAVEREEWERKAGSAGENASGGPSIAVGAVKMVVEEDESSTSTGESTHSSESGSESEEEEEEEEEEEEEEEEEEEEE---------VRGEEEEEEEVVAVHPRVPLKTEEDLETEAVFEKAFASMVMHSVEERKTNVRAGATSVSVDNMVLPTTL------PKLSHQEQG------KGGKEGGSG-LRF-CMLKRGNRGKLEAKELLVPAYTSLATQIRSHQDAAKEERDKLKQRVLQYESMVEGGEGGEDGWGWEEEGELERLQNRTLTEGEKARLTALAARKRAQRLTRGRG---GEGRGGGRGVGR--GSGGSGPSHGR 749
F L+ + ++L+ LF V S ELLP YSR+VATLS + ++ L+ L+ EF + + K+ +++ K K ++++GEL KFK+ PP + F+ L ACL+ FS HN+++AC LLETCGRFL+ +P T R+ L + RLK VK+LD L++NA +C PP + + R + + PPLH Y+R LLF L + + VL LRK PW +E + + L+ L+ +GK+ +H +A + A L +YH++ AVS+VDEVLEE++ GLE G + R LA R LGE Y+Y I ++VFDTLYL + +GH P LDPP D FR L+I LLQ CG + KG K KL FL +FQRY+ +G +P D E D+ DL EL R +LV +EE + A VE VE E + GPS+ + EE+ + +S S++GS EEEE+ E++ + + E V +E+E EV V K +ED F++ +++ S+E RK+ R+ NM++P + + + E G +GG GGS +R ++K+G+ K + +++L+PA +S+ + + A EE+ +K+R+L+Y E G W G+ A T+ + GRG G RGGGR GSGG S+GR
Sbjct: 262 FCYLNSKANRKKLVRALFNVNRTSLELLPYYSRLVATLSTCMKDVPSMLLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDSRHSTLVENAYYLCKPPER--SARISKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPW--------------AECQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVSVVDEVLEEIRVGLELNDYGMQQRR----LAHMRFLGELYSYKHIDSSVVFDTLYLIIVFGHGTPEQ----------------------DVLDPPEDCFRIRLIITLLQTCGHYFS-KGSSK--RKLDKFLLHFQRYIISKGPLPLDIEFDIQDLFGELRPTMSRYSSIEELVAALVEFEENERSAPVEKVENERHSDNESQKRHSRDAGPSVNGESAANGTEENGKAHEVADSESYSDTGSIDGREEEEDILSEDKSNDGSDNEGDDEDDGIPVVSDEDENVEVRQKVMNVDPKEQED------FDRELKALLQESLESRKSEARSRLPL----NMMVPMNVLEGSKDSRATESESGEETVDEEGGNAGGSSKVRVKVLMKKGH--KQQTRQMLIPADSSIVQSTKQQEAAELEEKQSIKRRILEYNEREEELNGASQMGNW----------------GQGATSTSSIR-------SGGRGSWDGSARGGGRQRHHITGSGGFYHSYGR 957 The following BLAST results are available for this feature:
BLAST of EWM27903.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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