EWM27914.1, cds2764 (CDS) Nannochloropsis gaditana

Overview
NameEWM27914.1
Unique Namecds2764
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1165189..1165304 +
Alignment locationCM002459.1:1165403..1165492 +
Alignment locationCM002459.1:1165831..1166233 +
Alignment locationCM002459.1:1166418..1166615 +
Alignment locationCM002459.1:1167009..1167173 +
Alignment locationCM002459.1:1167288..1167425 +
Alignment locationCM002459.1:1167500..1167568 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27914.1
Producthistone deacetylase superfamily protein
Orig transcript idgnl|cribi|Naga_100267g2.4727.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1165189..1165304 +
CM002459.1supercontigCM002459.1:1165403..1165492 +
CM002459.1supercontigCM002459.1:1165831..1166233 +
CM002459.1supercontigCM002459.1:1166418..1166615 +
CM002459.1supercontigCM002459.1:1167009..1167173 +
CM002459.1supercontigCM002459.1:1167288..1167425 +
CM002459.1supercontigCM002459.1:1167500..1167568 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004407histone deacetylase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0016575histone deacetylation
Vocabulary: INTERPRO
TermDefinition
IPR023801His_deacetylse_dom
IPR003084His_deacetylse_1
IPR000286His_deacetylse
Homology
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|585110253|gb|EWM27914.1| (histone deacetylase superfamily protein [Nannochloropsis gaditana])

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 392/392 (100.00%), Postives = 392/392 (100.00%), Query Frame = 0
Query:    1 MAANAGAGTKLSSALTKSTTGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKRRMAGMK 392
            MAANAGAGTKLSSALTKSTTGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKRRMAGMK
Sbjct:    1 MAANAGAGTKLSSALTKSTTGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKRRMAGMK 392          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|1125275764|gb|OLC20517.1| (class II histone deacetylase [Chloroflexi bacterium 13_1_40CM_66_19] >gi|1125307044|gb|OLC49912.1| class II histone deacetylase [Chloroflexi bacterium 13_1_40CM_4_65_16] >gi|1125563321|gb|OLE72623.1| class II histone deacetylase [Actinobacteria bacterium 13_1_20CM_2_66_18])

HSP 1 Score: 410.223 bits (1053), Expect = 5.190e-139
Identity = 199/366 (54.37%), Postives = 263/366 (71.86%), Query Frame = 0
Query:   19 TTGYVWHERYMWHHAGKYTW----NEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEAL 380
            TTG+VWHE Y WH  G   W       +QP  H E+ E KRR+ NL++ SGL+D LV + PR A+ EE+   HT EYV +I+  S   GG+AG+   FGPGSY+IA LAVGG + A+DAV+ G+ D      NAY L RPPGHHAE+D G GFC+F NVAL A+HAR  +GL RVA+VD+DVHHGNGT+ AFY+D +VL ISIHQD+NYP ++G + + G+G GEG  IN+PLP GSG GAY  AF+R ++PA+RA+ PEL++++SG DA  +DPLA+MM++S+ +R L Q + G+A++VC GR+V  HEGGYS  YVP+CG AI+EEL   RT + D +L  +  +G QELQPHQ+AVI++   L
Sbjct:    2 TTGFVWHELYAWHDTGTGAWVIPAGLTVQPLGHLENSEGKRRIRNLIEVSGLIDHLVMLKPRAATEEEILGLHTSEYVDRIRRESSQLGGDAGELTPFGPGSYDIALLAVGGCITAVDAVLDGKVD------NAYALVRPPGHHAERDTGRGFCIFGNVALTAIHARQLRGLSRVAVVDWDVHHGNGTEHAFYDDPSVLTISIHQDNNYPPNSGAITDTGSGAGEGYNINVPLPAGSGVGAYVAAFERAVVPALRAYQPELIIIASGLDASAMDPLASMMMTSDGYRKLTQLMLGVADEVCAGRLVMCHEGGYSPAYVPYCGLAIMEELAGMRTELADPLLDLLASFGGQELQPHQEAVIQEAMKL 361          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|567945527|gb|ETK71338.1| (hypothetical protein L915_21408 [Phytophthora parasitica] >gi|567974182|gb|ETL24783.1| hypothetical protein L916_21274 [Phytophthora parasitica] >gi|570311725|gb|ETO59673.1| hypothetical protein F444_22020 [Phytophthora parasitica P1976] >gi|570935497|gb|ETP00754.1| hypothetical protein F441_21891 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 401.749 bits (1031), Expect = 1.071e-135
Identity = 198/373 (53.08%), Postives = 258/373 (69.17%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLS-RAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMH--ARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTG---VRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKR 386
             GYV+ ERY+WH      ++  ++P RH+ESPE+KRR H+LL  SGLLD LV + P +A+  +L R HT  YV K++ LS R +GG AG+ A F   +++IA L+ GGVL A+DAV+ GR +T      AY L RPPGHHA  DRGMGFCL NNVA+ A H        +KR+AIVDYDVHHGNGTQ+AFY+D  VLF+S+HQ +NYPA +G + E G GKG G+ IN+PLPPGSGSGAY  AF  V++PA+ +F P+ +LVSSG+DA Y DPLA M+LSS  FR +  +L+  A+ +C GRIV+ HEGGYS+ YVPFCG A++EEL   +     ++D  L +V +W YQELQ HQ  V+     L TA K+
Sbjct:    3 VGYVFDERYLWHRPWSQQYSSLVEPFRHWESPETKRRFHSLLAVSGLLDQLVTIKPLIATKAQLERVHTRRYVEKMERLSAREEGGNAGEEAPFSQFAFDIAQLSAGGVLAAVDAVMDGRVNT------AYALTRPPGHHAVADRGMGFCLLNNVAISAKHLLETYTTRIKRIAIVDYDVHHGNGTQEAFYDDNRVLFVSLHQANNYPADSGAIIERGEGKGLGSNINLPLPPGSGSGAYEYAFKSVVVPALESFKPDFVLVSSGFDASYADPLAAMILSSSVFRFMAHELSEAAKRLCGGRIVFAHEGGYSETYVPFCGAAVIEELLGIQDADKQIKDPFLDEVERWEYQELQEHQRKVVDTVVELQTAPKQ 369          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|675212617|ref|XP_008915193.1| (hypothetical protein PPTG_18708 [Phytophthora parasitica INRA-310] >gi|566008042|gb|ETI30953.1| hypothetical protein F443_21999 [Phytophthora parasitica P1569] >gi|568003659|gb|ETL78005.1| hypothetical protein L917_21123 [Phytophthora parasitica] >gi|568084526|gb|ETM99454.1| hypothetical protein PPTG_18708 [Phytophthora parasitica INRA-310] >gi|970629678|gb|KUF76865.1| Histone deacetylase amidohydrolase [Phytophthora nicotianae])

HSP 1 Score: 400.979 bits (1029), Expect = 1.639e-135
Identity = 198/373 (53.08%), Postives = 258/373 (69.17%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLS-RAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMH--ARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTG---VRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKR 386
             GYV+ ERY+WH      ++  ++P RH+ESPE+KRR H+LL  SGLLD LV + P +A+  +L R HT  YV K++ LS R +GG AG+ A F   +++IA L+ GGVL A+DAV+ GR +T      AY L RPPGHHA  DRGMGFCL NNVA+ A H        +KR+AIVDYDVHHGNGTQ+AFY+D  VLF+S+HQ +NYPA +G + E G GKG G+ IN+PLPPGSGSGAY  AF  V++PA+ +F P+ +LVSSG+DA Y DPLA M+LSS  FR +  +L+  A+ +C GRIV+ HEGGYS+ YVPFCG A++EEL   +     ++D  L +V +W YQELQ HQ  V+     L TA K+
Sbjct:    3 VGYVFDERYLWHRPWSQQYSSLVEPFRHWESPETKRRFHSLLAVSGLLDQLVPIKPLIATKAQLERVHTRRYVEKMERLSAREEGGNAGEEAPFSQFAFDIAQLSAGGVLAAVDAVMDGRVNT------AYALTRPPGHHAVADRGMGFCLLNNVAISAKHLLETYTTRIKRIAIVDYDVHHGNGTQEAFYDDNRVLFVSLHQANNYPADSGAIIERGEGKGLGSNINLPLPPGSGSGAYEYAFKSVVVPALESFKPDFVLVSSGFDASYADPLAAMILSSSVFRFMAHELSEAAKRLCGGRIVFAHEGGYSETYVPFCGAAVIEELLGIQDADKQIKDPFLDEVERWEYQELQEHQRKVVDTVVELQTAPKQ 369          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|568033564|gb|ETM31266.1| (hypothetical protein L914_21140 [Phytophthora parasitica])

HSP 1 Score: 400.979 bits (1029), Expect = 1.868e-135
Identity = 198/373 (53.08%), Postives = 258/373 (69.17%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLS-RAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMH--ARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTG---VRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKR 386
             GYV+ ERY+WH      ++  ++P RH+ESPE+KRR H+LL  SGLLD LV + P +A+  +L R HT  YV K++ LS R +GG AG+ A F   +++IA L+ GGVL A+DAV+ GR +T      AY L RPPGHHA  DRGMGFCL NNVA+ A H        +KR+AIVDYDVHHGNGTQ+AFY+D  VLF+S+HQ +NYPA +G + E G GKG G+ IN+PLPPGSGSGAY  AF  V++PA+ +F P+ +LVSSG+DA Y DPLA M+LSS  FR +  +L+  A+ +C GRIV+ HEGGYS+ YVPFCG A++EEL   +     ++D  L +V +W YQELQ HQ  V+     L TA K+
Sbjct:    3 VGYVFDERYLWHRPWSQQYSSLVEPFRHWESPETKRRFHSLLAVSGLLDQLVPIKPLIATKAQLERVHTRRYVEKMERLSAREEGGNAGEEAPFSQFAFDIAQLSAGGVLAAVDAVMDGRVNT------AYALTRPPGHHAVTDRGMGFCLLNNVAISAKHLLETYTTRIKRIAIVDYDVHHGNGTQEAFYDDNRVLFVSLHQANNYPADSGAIIERGEGKGLGSNINLPLPPGSGSGAYEYAFKSVVVPALESFKPDFVLVSSGFDASYADPLAAMILSSSVFRFMAHELSEAAKRLCGGRIVFAHEGGYSETYVPFCGAAVIEELLGIQDADKQIKDPFLDEVERWEYQELQEHQRKVVDTVVELQTAPKQ 369          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|570965782|gb|ETP28901.1| (hypothetical protein F442_21866 [Phytophthora parasitica P10297])

HSP 1 Score: 399.053 bits (1024), Expect = 1.070e-134
Identity = 197/373 (52.82%), Postives = 257/373 (68.90%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLS-RAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMH--ARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTG---VRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALKR 386
             GYV+ ERY+WH      ++  ++P RH+ESPE+KRR H+LL  SGLLD LV + P +A+  +L R HT  YV K++ LS R +GG AG+ A F   +++IA L+ GGVL A+DAV+ GR +T      AY L RPPGHHA  DRGMGFCL NNVA+ A H        +KR+AIVDYDVHHGNGTQ+AFY+D  VLF+S+HQ +NYPA +G + E G GKG G+ IN+PLPPGSGSGAY  AF  V++PA+ +F P+ +LVSSG+DA Y DPLA M+LSS  FR +  +L+  A+ +C GRIV+ HEGGYS+ YVPFCG A++EEL   +     ++D  L +V +W YQELQ HQ  V+     L  A K+
Sbjct:    3 VGYVFDERYLWHRPWSQQYSSLVEPFRHWESPETKRRFHSLLAVSGLLDQLVPIKPLIATKAQLERVHTRRYVEKMERLSAREEGGNAGEEAPFSQFAFDIAQLSAGGVLAAVDAVMDGRVNT------AYALTRPPGHHAVADRGMGFCLLNNVAISAKHLLETYTTRIKRIAIVDYDVHHGNGTQEAFYDDNRVLFVSLHQANNYPADSGAIIERGEGKGLGSNINLPLPPGSGSGAYEYAFKSVVVPALESFKPDFVLVSSGFDASYADPLAAMILSSSVFRFMAHELSEAAKRLCGGRIVFAHEGGYSETYVPFCGAAVIEELLGIQDADKQIKDPFLDEVERWEYQELQEHQRKVVDTVVELQAAPKQ 369          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|301102851|ref|XP_002900512.1| (histone deacetylase, putative [Phytophthora infestans T30-4] >gi|262101775|gb|EEY59827.1| histone deacetylase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 397.512 bits (1020), Expect = 4.369e-134
Identity = 190/361 (52.63%), Postives = 257/361 (71.19%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLS-RAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMH--ARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRR---TGVRDCMLTDVHQWGYQELQPHQDAVI 374
             GYV+ ERY+WH      ++ +++P RH+ESPE+KRR H+LL  SGLLD LV + P++A++ +L R HT  Y+ +++ LS R +GG AG+ A F   +++IA L+ GGVL A+DAV+ GR DT      AY L RPPGHHA  DRGMGFCL NNVA+ A H        +K++AIVDYDVHHGNGTQ+AFY+D+ VLF+S+HQ +NYPA TG + E G  KG G T+N+PLPPGSGSGAY  AF  V++P++ +F P+ +LVSSG+DA Y DPLA M+LSS  FR +  ++  +A+ +C GRIV+ HEGGYS+ YVPFCG A++EEL   +     ++D  L++V +W YQELQ HQ  V+
Sbjct:    3 VGYVYDERYLWHRPWSQQYSAFVEPFRHWESPETKRRFHSLLAVSGLLDQLVTIRPQIATMIQLERVHTRRYLEELEQLSAREEGGNAGEEAPFSQLAFDIARLSAGGVLAAVDAVMEGRVDT------AYALTRPPGHHAVADRGMGFCLLNNVAITAKHLLETYSSQIKKIAIVDYDVHHGNGTQEAFYDDDRVLFVSLHQANNYPADTGKITERGEDKGLGFTVNVPLPPGSGSGAYEYAFRNVVIPSLESFKPDFVLVSSGFDASYADPLAAMILSSSVFRFMAHEVVDVAKRICAGRIVFAHEGGYSETYVPFCGAAVIEELLGIQDVDKQIKDPFLSEVERWEYQELQEHQKKVV 357          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|751285502|ref|WP_040994237.1| (class II histone deacetylase [Mesorhizobium sp. SOD10] >gi|685087662|emb|CDX18467.1| Histone deacetylase-like amidohydrolase [Mesorhizobium sp. SOD10])

HSP 1 Score: 392.889 bits (1008), Expect = 2.801e-132
Identity = 192/375 (51.20%), Postives = 254/375 (67.73%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEW---------IQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALK 385
            TG+V+HE Y+WH+    TWN W         +QP  H E+PE+KRRL NLL+ SG+LD LV + PR A+VEEL+R HT  ++ KI+ +S    G+A      G GSYEIA LA GG + AI+AV+TG+ D      NAY L RPPGHHA  D GMGFCLF+N A+   HA+   GL R+A VD+DVHHGNGTQ  FY+D +VL IS+HQD+ +PA++G + ENG GKG+G  IN+PLPPGSG GAY  AF+RV++PA+  F PEL++V SG+DA  +DP+  M+++S  +R L + L   A ++C GR+V  HEGGYS++YVP+CG A++EEL   RTGV D     + QWG    QPHQ A+I +   LV  + 
Sbjct:    3 TGFVFHELYLWHN----TWN-WAQVFPPSLTVQPGTHAENPETKRRLRNLLEVSGILDHLVTIKPRRATVEELSRVHTPAHIAKIREISDRGYGDASSLTPLGAGSYEIALLAAGGAIKAIEAVITGQVD------NAYALIRPPGHHATADVGMGFCLFSNAAIAIRHAQQLHGLTRIATVDWDVHHGNGTQAIFYDDPSVLSISLHQDNLFPANSGAIAENGEGKGKGFNINVPLPPGSGPGAYAAAFERVVIPALTRFKPELIVVPSGFDASGVDPMGRMLMNSSGYRRLARMLLDAARELCGGRLVMTHEGGYSEMYVPYCGLAVIEELCGHRTGVEDPWDQLMGQWGGMSAQPHQTAIIDQAAELVKNIN 366          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|1184557785|ref|WP_085124717.1| (class II histone deacetylase [Tistlia consotensis] >gi|1182742834|emb|SMF55776.1| Acetoin utilization deacetylase AcuC [Tistlia consotensis USBA 355])

HSP 1 Score: 391.349 bits (1004), Expect = 9.193e-132
Identity = 197/375 (52.53%), Postives = 251/375 (66.93%), Query Frame = 0
Query:   20 TGYVWHERYMWHHAGKYTWNEW---------IQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALK 385
            TG+V+HE YMWH+    TWN W         +QP  H E+PE+KRR  NLL+ SGLLD L+ +  R AS +E+ RFHT +Y+ +I+  S   GG+A     FG GS+EIA L+ GG + A DAV+TG       VRNAY L RPPGHHA  D G+GFCLF NVAL  MHAR   GL R+A VD+DVHHGNGTQ AFY D   L +SIHQD+ YP  +G ++E G G G G  +NIPLPPGSG GAY  AF+RV+LPA+R F PEL++V SG+DA  +DPL  MM+SSE +R + + L   A+++C GR+V  HEGGYS  YVP+CG A++EEL+  RTGV D     +  WG Q L PHQ+AVI+   A +  ++
Sbjct:    3 TGFVFHEIYMWHN----TWN-WAQVFPPSLTVQPGEHAENPETKRRFRNLLEVSGLLDRLLPLKARAASEDEIARFHTRDYIERIKRASAGSGGDASHLTPFGTGSFEIAQLSAGGTMAAFDAVITG------AVRNAYALVRPPGHHAIADAGLGFCLFGNVALAIMHARAVHGLGRIATVDWDVHHGNGTQAAFYSDPTTLTLSIHQDNLYPPDSGGLDEIGEGAGRGYNLNIPLPPGSGDGAYLAAFERVVLPALRRFRPELIVVPSGFDASGVDPLGRMMVSSEGYRAMTRLLLDAADELCAGRLVMSHEGGYSATYVPYCGLAVLEELSGFRTGVEDPWGPLMAGWGGQALAPHQEAVIEAAAARLAGIR 366          
BLAST of EWM27914.1 vs. NCBI_GenBank
Match: gi|1125232439|gb|OLB80247.1| (class II histone deacetylase [Actinobacteria bacterium 13_2_20CM_2_66_6])

HSP 1 Score: 390.193 bits (1001), Expect = 2.260e-131
Identity = 190/361 (52.63%), Postives = 254/361 (70.36%), Query Frame = 0
Query:   29 MWHHAGKYTW----NEWIQPTRHFESPESKRRLHNLLDASGLLDCLVRVPPRLASVEELTRFHTLEYVGKIQSLSRAQGGEAGDFATFGPGSYEIACLAVGGVLNAIDAVVTGRTDTGDKVRNAYCLARPPGHHAEKDRGMGFCLFNNVALGAMHARVKQGLKRVAIVDYDVHHGNGTQQAFYEDEAVLFISIHQDSNYPAHTGYVEENGTGKGEGTTINIPLPPGSGSGAYFEAFDRVILPAVRAFAPELLLVSSGYDAGYLDPLATMMLSSEHFRTLGQKLNGLAEDVCDGRIVYVHEGGYSDLYVPFCGHAIVEELTKRRTGVRDCMLTDVHQWGYQELQPHQDAVIKKCEALVTALK 385
            MWH  G   W       +QP  H E+ E KRR+ NL++ SGL+D LV + PR A+ +E+ R HT EYV +I+  S   GG+AG+   FGPGSYEIA LA GG + A+DAVV G+ D      NAY L RPPGHHAE+D G GFC+F NVA+ A HAR  +GL+RVA+VD+DVHHGNGT+ AFY+D +VL ISIHQD+NYP ++G + + G+G G+G  IN+PLP GSG GAY   F+RV+ PA+R + PEL++V+SG DA  +DPLA+MM++S+ +R L Q + G+A +VC GR+V  HEGGYS  YVPFCG AI+EEL   RT + D +L  +  +G Q+LQPHQ+AV+++   L   ++
Sbjct:    1 MWHDTGTGAWVIPAGLTVQPLGHLENAEGKRRIRNLIEVSGLIDHLVLLKPRAATEDEVLRLHTREYVDRIKDESSKMGGDAGELTPFGPGSYEIALLAAGGCIAAVDAVVDGKVD------NAYALVRPPGHHAERDTGRGFCIFANVAIAATHARQVRGLRRVAVVDWDVHHGNGTEHAFYDDPSVLTISIHQDNNYPPNSGAMTDTGSGAGKGYNINVPLPAGSGVGAYVATFERVVAPALRNYRPELIIVASGLDASAMDPLASMMMTSDGYRKLTQVMLGVAHEVCGGRLVMCHEGGYSPAYVPFCGLAIMEELAGVRTELADPLLDLLASFGGQDLQPHQEAVLREAMKLAAGVR 355          
The following BLAST results are available for this feature:
BLAST of EWM27914.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110253|gb|EWM27914.1|0.000e+0100.00histone deacetylase superfamily protein [Nannochlo... [more]
gi|1125275764|gb|OLC20517.1|5.190e-13954.37class II histone deacetylase [Chloroflexi bacteriu... [more]
gi|567945527|gb|ETK71338.1|1.071e-13553.08hypothetical protein L915_21408 [Phytophthora para... [more]
gi|675212617|ref|XP_008915193.1|1.639e-13553.08hypothetical protein PPTG_18708 [Phytophthora para... [more]
gi|568033564|gb|ETM31266.1|1.868e-13553.08hypothetical protein L914_21140 [Phytophthora para... [more]
gi|570965782|gb|ETP28901.1|1.070e-13452.82hypothetical protein F442_21866 [Phytophthora para... [more]
gi|301102851|ref|XP_002900512.1|4.369e-13452.63histone deacetylase, putative [Phytophthora infest... [more]
gi|751285502|ref|WP_040994237.1|2.801e-13251.20class II histone deacetylase [Mesorhizobium sp. SO... [more]
gi|1184557785|ref|WP_085124717.1|9.193e-13252.53class II histone deacetylase [Tistlia consotensis]... [more]
gi|1125232439|gb|OLB80247.1|2.260e-13152.63class II histone deacetylase [Actinobacteria bacte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2772rna2772Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications