EWM27917.1, cds2748 (CDS) Nannochloropsis gaditana

Overview
NameEWM27917.1
Unique Namecds2748
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1130956..1131429 +

Link to JBrowse

Properties
Property NameValue
Start range1130956
Start range.
Protein idEWM27917.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100285g1.3538.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1130956..1131429 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|585110257|gb|EWM27917.1| (hypothetical protein Naga_100285g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 311.997 bits (798), Expect = 1.893e-107
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 PPLSLPPSLPHPARAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLTMDSVLNALAPAERREIEQERGKEVLRDAGRISVRQGQWISFGGGGGRERGGGGGRDETSQEEALERALALLKFGK 157
            PPLSLPPSLPHPARAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLTMDSVLNALAPAERREIEQERGKEVLRDAGRISVRQGQWISFGGGGGRERGGGGGRDETSQEEALERALALLKFGK
Sbjct:    1 PPLSLPPSLPHPARAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLTMDSVLNALAPAERREIEQERGKEVLRDAGRISVRQGQWISFGGGGGRERGGGGGRDETSQEEALERALALLKFGK 157          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|1056061591|ref|WP_067587289.1| (ATP-binding protein [Endozoicomonas ascidiicola])

HSP 1 Score: 70.4774 bits (171), Expect = 1.402e-12
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0
Query:   13 ARAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLERLT 82
            A+AK  L+ G++VVV NT    WE + Y+  A  LG +V+ + A G Y N+HGVP EKVE MR R E  T
Sbjct:   63 AKAKMSLNAGKNVVVANTFTRIWEMKPYLMMAKRLGCQVKVIEATGNYKNVHGVPDEKVEQMRERFENFT 132          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|1007731970|ref|XP_015806883.1| (PREDICTED: NEDD4-binding protein 2-like 2 [Nothobranchius furzeri])

HSP 1 Score: 68.5514 bits (166), Expect = 1.162e-10
Identity = 39/110 (35.45%), Postives = 65/110 (59.09%), Query Frame = 0
Query:   13 ARAKAFLDEGRS-VVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYG---------NLHGVPAEKVEMMRARLER-LTMDSVLNALAPA---ERREIEQERGKEVLR 108
            +RA   L++GRS V++DNTN++AWE + YV+ A+  G KV+F   E  +          N HGVP EK++ M  R    +++D ++++  PA   +RR  EQ++ ++  R
Sbjct:  360 SRANNALNDGRSPVIIDNTNLQAWEMKPYVKMALERGYKVDFCEPETSWKFDPLELEKRNKHGVPQEKIKQMMDRFSSPVSIDIIMSSEEPAHVNQRRWSEQQQNRKKPR 469          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|972959965|ref|XP_015197485.1| (PREDICTED: NEDD4-binding protein 2-like 2 [Lepisosteus oculatus])

HSP 1 Score: 68.5514 bits (166), Expect = 1.422e-10
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0
Query:   14 RAKAFLDEGRS-VVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYG---------NLHGVPAEKVEMMRARLER-LTMDSVLNALAPAER 95
            RA+  LD+GRS V++DNTN++AWE + YV  A+  G +VEF   +  +          N HGVP EK+  M  R ER +++D VLN+  P  +
Sbjct:  482 RAREALDQGRSPVIIDNTNLQAWEMKPYVELALERGYRVEFQEPDTSWKSDPLELEKRNKHGVPGEKISHMLERFERPVSVDIVLNSQEPTHK 574          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|782669282|ref|WP_045598499.1| (ATP-binding protein [Vibrio vulnificus] >gi|1039808418|gb|ANN26654.1| hypothetical protein FORC17_1591 [Vibrio vulnificus])

HSP 1 Score: 63.1586 bits (152), Expect = 6.026e-10
Identity = 26/66 (39.39%), Postives = 41/66 (62.12%), Query Frame = 0
Query:   14 RAKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            +   +L +GR+V+V NT ++ WE + Y+R A   G  VE +   G YG++H VPA+ +E MR R +
Sbjct:   64 KVCQYLKQGRTVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQRWQ 129          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|823699778|ref|WP_047112052.1| (ATP-binding protein [Vibrio vulnificus] >gi|823482861|gb|KLI65904.1| ATPase AAA [Vibrio vulnificus CladeA-yb158] >gi|1111623771|gb|OJI34205.1| adenylylsulfate kinase [Vibrio vulnificus])

HSP 1 Score: 63.1586 bits (152), Expect = 6.559e-10
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   18 FLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            +L +GR+V+V NT ++ WE + Y+R A   G  VE +   G YG++H VPA+ +E MR R +
Sbjct:   68 YLKQGRTVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQRWQ 129          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|499393051|ref|WP_011080518.1| (ATP-binding protein [Vibrio vulnificus] >gi|27362168|gb|AAO11023.1| hypothetical protein VV1_2676 [Vibrio vulnificus CMCP6])

HSP 1 Score: 62.7734 bits (151), Expect = 8.826e-10
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:   18 FLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            +L +GR+V+V NT ++ WE + Y+R A   G  VE +   G YG++H VPA+ +E MR R +
Sbjct:   68 YLKQGRAVIVSNTFVQHWEMKSYLRFAERHGFSVEILVCTGEYGSIHDVPAQTIEKMRQRWQ 129          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|782753005|ref|WP_045629485.1| (ATP-binding protein [Vibrio vulnificus])

HSP 1 Score: 62.7734 bits (151), Expect = 9.111e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    6 PPSLPHPAR-----AKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            P  L H  R        +L +GR+V+V NT ++ WE + Y+R A   G+ VE +   G YG++H VPA+ +E MR R +
Sbjct:   51 PTRLEHAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKPYLRFAERHGLSVEILVCTGEYGSIHDVPAQTIEKMRQRWQ 129          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|1209921919|ref|WP_088427701.1| (AAA family ATPase [Vibrio vulnificus] >gi|1209349298|gb|ASC57033.1| hypothetical protein FORC37_1339 [Vibrio vulnificus])

HSP 1 Score: 62.7734 bits (151), Expect = 9.306e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    6 PPSLPHPAR-----AKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            P  L H  R        +L +GR+V+V NT ++ WE + Y+R A   G+ VE +   G YG++H VPA+ +E MR R +
Sbjct:   51 PTRLEHAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKPYLRFAERHGLSVEILVCTGEYGSIHAVPAQTIEKMRQRWQ 129          
BLAST of EWM27917.1 vs. NCBI_GenBank
Match: gi|782711158|ref|WP_045614598.1| (ATP-binding protein [Vibrio vulnificus])

HSP 1 Score: 62.7734 bits (151), Expect = 9.709e-10
Identity = 30/79 (37.97%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    6 PPSLPHPAR-----AKAFLDEGRSVVVDNTNIEAWEPREYVRHAIHLGVKVEFVRAEGRYGNLHGVPAEKVEMMRARLE 79
            P  L H  R        +L +GR+V+V NT ++ WE + Y+R A   G+ VE +   G YG++H VPA+ +E MR R +
Sbjct:   51 PTRLEHAHRWCLNKVCQYLKQGRAVIVSNTFVQHWEMKPYLRFAERHGLNVEILVCTGEYGSIHAVPAQTIEKMRQRWQ 129          
The following BLAST results are available for this feature:
BLAST of EWM27917.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110257|gb|EWM27917.1|1.893e-107100.00hypothetical protein Naga_100285g1, partial [Nanno... [more]
gi|1056061591|ref|WP_067587289.1|1.402e-1248.57ATP-binding protein [Endozoicomonas ascidiicola][more]
gi|1007731970|ref|XP_015806883.1|1.162e-1035.45PREDICTED: NEDD4-binding protein 2-like 2 [Nothobr... [more]
gi|972959965|ref|XP_015197485.1|1.422e-1040.86PREDICTED: NEDD4-binding protein 2-like 2 [Lepisos... [more]
gi|782669282|ref|WP_045598499.1|6.026e-1039.39ATP-binding protein [Vibrio vulnificus] >gi|103980... [more]
gi|823699778|ref|WP_047112052.1|6.559e-1041.94ATP-binding protein [Vibrio vulnificus] >gi|823482... [more]
gi|499393051|ref|WP_011080518.1|8.826e-1041.94ATP-binding protein [Vibrio vulnificus] >gi|273621... [more]
gi|782753005|ref|WP_045629485.1|9.111e-1037.97ATP-binding protein [Vibrio vulnificus][more]
gi|1209921919|ref|WP_088427701.1|9.306e-1037.97AAA family ATPase [Vibrio vulnificus] >gi|12093492... [more]
gi|782711158|ref|WP_045614598.1|9.709e-1037.97ATP-binding protein [Vibrio vulnificus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2756rna2756Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications