EWM27962.1, cds2703 (CDS) Nannochloropsis gaditana

Overview
NameEWM27962.1
Unique Namecds2703
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:1018087..1018523 -
Alignment locationCM002459.1:1016110..1017853 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27962.1
Productpre-mrna cleavage complex 2 protein
Orig transcript idgnl|cribi|Naga_100008g81.7854.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:1018087..1018523 -
CM002459.1supercontigCM002459.1:1016110..1017853 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006903RNA_pol_II-bd
IPR008942ENTH_VHS
IPR006569CID_dom
Homology
[Close]
BLAST of EWM27962.1 vs. NCBI_GenBank
Match: gi|585110303|gb|EWM27962.1| (pre-mrna cleavage complex 2 protein [Nannochloropsis gaditana])

HSP 1 Score: 1469.91 bits (3804), Expect = 0.000e+0
Identity = 726/726 (100.00%), Postives = 726/726 (100.00%), Query Frame = 0 
Query:    1 MYYLFPSLLTRVYLCFSLISTADHSSHGLSLRPILEQSHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV 726
            MYYLFPSLLTRVYLCFSLISTADHSSHGLSLRPILEQSHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV
Sbjct:    1 MYYLFPSLLTRVYLCFSLISTADHSSHGLSLRPILEQSHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV 726
[Close]
BLAST of EWM27962.1 vs. NCBI_GenBank
Match: gi|585110302|gb|EWM27961.1| (pre-mrna cleavage complex 2 protein [Nannochloropsis gaditana])

HSP 1 Score: 1392.48 bits (3603), Expect = 0.000e+0
Identity = 689/689 (100.00%), Postives = 689/689 (100.00%), Query Frame = 0 
Query:   38 SHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV 726
            SHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV
Sbjct:   57 SHTPPAFRLPLCYLMDSILQNIRGQYIPLFSRYAVAMCCRTYEEGSDRDRQCISKLLRLWRERQVFEAAVLDPIDVHLARIERVGREKASGTRAMAVSGHTGVGVGEKRKLPPLQSPAPPVPPSARLSPRLSPPPSPPPDLGRNGESDGSRLRKDPRRQPAHLSSGPSDKLRGPPPPAPPPPPRVPQAAIPAPDPSQPRPRPSSTTTQSLQFILAVDREMKSMLEKLLQEMGEAKMTIEELARRNPRAAEQLKKAAEVTVASRLHSEAQNAVDALDAVGPFALPPVDRDMWVKGGQVAARLQKAVSDAGPAPVKAGLIRAAQETASQVKAMINILMQHQGLPPLPHHNPASAPAPRPPPPPPPPPPPPPPPPHQPSQPYALQTMAQKLAEALLNQQQRQPQYSQQHLQQQVPPNVPPSSIPLSQQQQQQPPAPHQALLQQDQKQQQLSRQQQGKQYILIKLYSGEQCKEDGLRFSSPTSLQDHEAWLAKVHKLALAAAGKGTTQTEVLLRSRPWFCTIDAWSKEALPSERAESLASRISHLNLRQKGRSVGQKMDGRKGIDGGHGDNEAENLAHCVPVDDGFSGCALCGEPFDQFWEDASSEWMYRNAIPVAIVEGECVPVSSDTAVESGESTRHLVHWLCYEACDRREAARMLQKPGDTSTTTASHGGNGDDAKGALSLEKKPEAVGV 745
The following BLAST results are available for this feature:
BLAST of EWM27962.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110303|gb|EWM27962.1|0.000e+0100.00pre-mrna cleavage complex 2 protein [Nannochlorops... [more]
gi|585110302|gb|EWM27961.1|0.000e+0100.00pre-mrna cleavage complex 2 protein [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2711rna2711Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications