EWM28010.1, cds2686 (CDS) Nannochloropsis gaditana

Overview
NameEWM28010.1
Unique Namecds2686
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:986659..987008 -
Alignment locationCM002459.1:986015..986179 -
Alignment locationCM002459.1:985801..985909 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28010.1
Producttransmembrane protein
Orig transcript idgnl|cribi|Naga_100008g65.7902.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:986659..987008 -
CM002459.1supercontigCM002459.1:986015..986179 -
CM002459.1supercontigCM002459.1:985801..985909 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|585110351|gb|EWM28010.1| (transmembrane protein [Nannochloropsis gaditana])

HSP 1 Score: 418.698 bits (1075), Expect = 4.199e-148
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
Query:    1 MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF 207
            MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF
Sbjct:    1 MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF 207          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|698811974|ref|XP_009839016.1| (hypothetical protein H257_13250 [Aphanomyces astaci] >gi|574105830|gb|ETV71351.1| hypothetical protein H257_13250 [Aphanomyces astaci])

HSP 1 Score: 142.124 bits (357), Expect = 2.501e-39
Identity = 68/174 (39.08%), Postives = 104/174 (59.77%), Query Frame = 0
Query:   43 SGSNVINPASLSVPPPSSSLPVVDG-VRTTSKRERAEIWER-----------ISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            SG     P+S    P +    V D  V + ++ E AE+ +R           +S K+ A  W++G    L+Y + + V   D R++RVYF++ ++C GIN CI LYL+++L  +K I++EW+ YCPRM+P AT  G+VCA+     LWPV+GFF P IL V+F G++ + HF+P
Sbjct:    4 SGGVRTRPSSYQRLPQTEDSDVADAAVDSNAETEIAELKKRAQGKPPSRAEVVSTKIHALMWIVGAGFLLYYLDVLRVAFRDARVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|673018580|ref|XP_008863251.1| (hypothetical protein H310_01787 [Aphanomyces invadans] >gi|574480165|gb|ETW07158.1| hypothetical protein H310_01787 [Aphanomyces invadans])

HSP 1 Score: 141.354 bits (355), Expect = 4.470e-39
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 0
Query:   76 RAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            RAE+   IS K+ A  W++G    L+Y + +HV   D R++RVYF+L ++C GIN CI LYL ++L  +K I++EW  YCPRM+P AT  GVVCA+     LWPV+GFF P IL V+F G++ + HF+P
Sbjct:   50 RAEV---ISTKIHAFLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|299471208|emb|CBN79064.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.739 bits (356), Expect = 1.726e-38
Identity = 69/168 (41.07%), Postives = 105/168 (62.50%), Query Frame = 0
Query:   39 SSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWP 206
            S RA  S  ++     V       P  +     SKR R+++ +RIS KL A  WV+  +A ++ T+FV V+++DER++R++F++ ++C  +N  I  YLTV+L  ++GI + W  Y PR IP AT  G++CA+ L  SLW V+GF  PLIL  +F G +FS+HF+PWP
Sbjct:   73 SGRADSSRDMSLRYSRVTSGDGGSPATEA--EQSKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWP 238          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1173957495|gb|OQS04007.1| (transmembrane protein [Thraustotheca clavata])

HSP 1 Score: 130.568 bits (327), Expect = 6.506e-35
Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 0
Query:   81 ERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            E +S KL A  W+   +A  +  + ++V   D R++R+YF++ ++C G+N CI LYL V+L  +K I++EW+ YCPRMIP AT  G++CA+  +  LWPV+GFF P IL V+F GS+ + HF+P
Sbjct:   40 EYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|813156653|ref|XP_012201675.1| (hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65] >gi|641533569|gb|KDO27550.1| hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 127.102 bits (318), Expect = 1.624e-33
Identity = 61/166 (36.75%), Postives = 99/166 (59.64%), Query Frame = 0
Query:   40 SRASGSNVINPASLSVPPPSSSL-PVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            +RA     + PA        ++L   ++ ++  S  +     E +S KL A  WV G     +Y + VH+ L D R++R+YF++ ++C G+N CI  YL ++L  ++ +++EW+ YCPRMIP AT  G+V A+ L+  LWPV+G F P IL V+F G++ + HF+P
Sbjct:    3 TRAGSYQRLAPADAETDSLDATLDEEIEDLKKRSLPKAPSKAEWLSTKLHALLWVGGACLLAYYLDVVHIALRDVRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGALGLILGLWPVWGLFTPGILFVLFLGTLMTAHFLP 168          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1173949395|gb|OQR97437.1| (transmembrane protein [Achlya hypogyna])

HSP 1 Score: 122.094 bits (305), Expect = 1.475e-31
Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 0
Query:   81 ERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            E +S KL A  WV+      ++ +  +V   D R++R+ F++ ++C GIN CI  YL ++L  +K I++EW+ YCPRMIP AT +G+ CA+  +  LWP++GFF P IL V+F G++ + HF+P
Sbjct:   47 EWLSTKLHAALWVVCAGLVAYFLDVFNVAFGDPRVHRLSFNVGLVCFGINCCITAYLAIWLPYVKKIDLEWSVYCPRMIPTATVAGLGCALGFIFGLWPIWGFFTPGILFVLFLGTLMTAHFLP 170          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|325189478|emb|CCA23966.1| (transmembrane protein putative [Albugo laibachii Nc14])

HSP 1 Score: 120.939 bits (302), Expect = 7.735e-31
Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 0
Query:   39 SSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
             + +  ++++N A+   P             + S+ +RAE++   S KL A  WV+  +   HY +FVHV+  D R+   +F++A+I  GI  CI  YL ++L  +K I +EW+ YCPRMIP AT  G   + C   + WPVYG   P IL + F  S+ + HF+P
Sbjct:   35 DNDSEEADLLNEAAY--PSEEHDENTAKKAHSRSRSQRAELY---STKLHALLWVVTALIAAHYLDFVHVICYDPRVRTAFFYVAVILSGIYACITCYLAIWLPYVKNIRLEWSVYCPRMIPTATLVGFSASFCFHCAFWPVYGVLTPAILSLFFIASLMTAHFLP 195          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1214708072|gb|OWZ19395.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 119.013 bits (297), Expect = 1.950e-30
Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0
Query:   69 RTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            +  S+ ++A +W   S +L A  WV       + T+F  V+  D R+NR +F +A+IC G+N+CI  YL VYL  IK I +EW+ YCPRMIP AT  GVV A C + + WP++G   P +L + F G++ + HF+P
Sbjct:   35 QRASRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIFTDPRVNRGFFQVALICTGVNICITAYLAVYLPYIKRIQLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLFFIGTLMTAHFLP 167          
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|669172553|ref|XP_008621625.1| (hypothetical protein SDRG_17166 [Saprolegnia diclina VS20] >gi|530726706|gb|EQC24948.1| hypothetical protein SDRG_17166 [Saprolegnia diclina VS20])

HSP 1 Score: 118.627 bits (296), Expect = 3.365e-30
Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 0
Query:   40 SRASGSNVINPASLSVPPPSSSL-PVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204
            +RA     + PA        ++L   ++ ++  S  +     E +S KL A  WV G     +Y + V V L D R++R+YF++ +   G+N CI  YL ++L  ++ +++EW+ YCPRMIP AT  G+V A+  +  LWPV+GFF P IL V+F G +   HF+P
Sbjct:    3 TRAGSYQRLAPADTETESLDATLDEEIEDLKKRSLPKAPSKAEWLSTKLHALLWVAGACLLAYYLDVVRVALRDPRVHRLYFNIGVASAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATVVGLVGALGFILGLWPVWGFFTPGILFVLFLGMLMMAHFLP 168          
The following BLAST results are available for this feature:
BLAST of EWM28010.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110351|gb|EWM28010.1|4.199e-148100.00transmembrane protein [Nannochloropsis gaditana][more]
gi|698811974|ref|XP_009839016.1|2.501e-3939.08hypothetical protein H257_13250 [Aphanomyces astac... [more]
gi|673018580|ref|XP_008863251.1|4.470e-3948.84hypothetical protein H310_01787 [Aphanomyces invad... [more]
gi|299471208|emb|CBN79064.1|1.726e-3841.07conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173957495|gb|OQS04007.1|6.506e-3545.16transmembrane protein [Thraustotheca clavata][more]
gi|813156653|ref|XP_012201675.1|1.624e-3336.75hypothetical protein SPRG_06817 [Saprolegnia paras... [more]
gi|1173949395|gb|OQR97437.1|1.475e-3141.94transmembrane protein [Achlya hypogyna][more]
gi|325189478|emb|CCA23966.1|7.735e-3135.54transmembrane protein putative [Albugo laibachii N... [more]
gi|1214708072|gb|OWZ19395.1|1.950e-3041.91Transmembrane protein [Phytophthora megakarya][more]
gi|669172553|ref|XP_008621625.1|3.365e-3036.14hypothetical protein SDRG_17166 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2694rna2694Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications