EWM28010.1, cds2686 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|585110351|gb|EWM28010.1| (transmembrane protein [Nannochloropsis gaditana]) HSP 1 Score: 418.698 bits (1075), Expect = 4.199e-148 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0 Query: 1 MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF 207 MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF Sbjct: 1 MDSSAPLLPPLPHAPPPPSSHHPVNRPLTPSHPHHRRSSSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWPF 207
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|698811974|ref|XP_009839016.1| (hypothetical protein H257_13250 [Aphanomyces astaci] >gi|574105830|gb|ETV71351.1| hypothetical protein H257_13250 [Aphanomyces astaci]) HSP 1 Score: 142.124 bits (357), Expect = 2.501e-39 Identity = 68/174 (39.08%), Postives = 104/174 (59.77%), Query Frame = 0 Query: 43 SGSNVINPASLSVPPPSSSLPVVDG-VRTTSKRERAEIWER-----------ISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 SG P+S P + V D V + ++ E AE+ +R +S K+ A W++G L+Y + + V D R++RVYF++ ++C GIN CI LYL+++L +K I++EW+ YCPRM+P AT G+VCA+ LWPV+GFF P IL V+F G++ + HF+P Sbjct: 4 SGGVRTRPSSYQRLPQTEDSDVADAAVDSNAETEIAELKKRAQGKPPSRAEVVSTKIHALMWIVGAGFLLYYLDVLRVAFRDARVHRVYFNIGLVCFGINACITLYLSIWLPYVKKIDLEWSVYCPRMVPTATVVGIVCALMFTVGLWPVWGFFTPGILFVLFLGTLMTAHFLP 177
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|673018580|ref|XP_008863251.1| (hypothetical protein H310_01787 [Aphanomyces invadans] >gi|574480165|gb|ETW07158.1| hypothetical protein H310_01787 [Aphanomyces invadans]) HSP 1 Score: 141.354 bits (355), Expect = 4.470e-39 Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 0 Query: 76 RAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 RAE+ IS K+ A W++G L+Y + +HV D R++RVYF+L ++C GIN CI LYL ++L +K I++EW YCPRM+P AT GVVCA+ LWPV+GFF P IL V+F G++ + HF+P Sbjct: 50 RAEV---ISTKIHAFLWIVGAGFLLYYLDVMHVAFRDSRVHRVYFNLGLVCFGINTCITLYLAIWLPYVKKIDLEWNVYCPRMVPTATIVGVVCALMFTMGLWPVWGFFTPGILFVLFLGALMTAHFLP 175
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|299471208|emb|CBN79064.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 141.739 bits (356), Expect = 1.726e-38 Identity = 69/168 (41.07%), Postives = 105/168 (62.50%), Query Frame = 0 Query: 39 SSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIPWP 206 S RA S ++ V P + SKR R+++ +RIS KL A WV+ +A ++ T+FV V+++DER++R++F++ ++C +N I YLTV+L ++GI + W Y PR IP AT G++CA+ L SLW V+GF PLIL +F G +FS+HF+PWP Sbjct: 73 SGRADSSRDMSLRYSRVTSGDGGSPATEA--EQSKRRRSQLADRISNKLHAFFWVVVGVAVVYRTDFVRVLVEDERVDRLWFNIGLVCFSVNAVILAYLTVWLPHVRGIRVSWNVYSPRAIPTATVVGLICALALNMSLWNVWGFLTPLILFAVFIGCLFSLHFVPWP 238
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1173957495|gb|OQS04007.1| (transmembrane protein [Thraustotheca clavata]) HSP 1 Score: 130.568 bits (327), Expect = 6.506e-35 Identity = 56/124 (45.16%), Postives = 85/124 (68.55%), Query Frame = 0 Query: 81 ERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 E +S KL A W+ +A + + ++V D R++R+YF++ ++C G+N CI LYL V+L +K I++EW+ YCPRMIP AT G++CA+ + LWPV+GFF P IL V+F GS+ + HF+P Sbjct: 40 EYVSTKLHAALWIGSAVALAYCLDVLNVAFHDPRVHRLYFNIGLVCFGMNCCITLYLAVWLPYVKKIDLEWSVYCPRMIPTATIIGILCALGFILGLWPVWGFFTPGILFVLFLGSLMTAHFLP 163
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|813156653|ref|XP_012201675.1| (hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65] >gi|641533569|gb|KDO27550.1| hypothetical protein SPRG_06817 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 127.102 bits (318), Expect = 1.624e-33 Identity = 61/166 (36.75%), Postives = 99/166 (59.64%), Query Frame = 0 Query: 40 SRASGSNVINPASLSVPPPSSSL-PVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 +RA + PA ++L ++ ++ S + E +S KL A WV G +Y + VH+ L D R++R+YF++ ++C G+N CI YL ++L ++ +++EW+ YCPRMIP AT G+V A+ L+ LWPV+G F P IL V+F G++ + HF+P Sbjct: 3 TRAGSYQRLAPADAETDSLDATLDEEIEDLKKRSLPKAPSKAEWLSTKLHALLWVGGACLLAYYLDVVHIALRDVRVHRLYFNIGVVCAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATIVGLVGALGLILGLWPVWGLFTPGILFVLFLGTLMTAHFLP 168
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1173949395|gb|OQR97437.1| (transmembrane protein [Achlya hypogyna]) HSP 1 Score: 122.094 bits (305), Expect = 1.475e-31 Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 0 Query: 81 ERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 E +S KL A WV+ ++ + +V D R++R+ F++ ++C GIN CI YL ++L +K I++EW+ YCPRMIP AT +G+ CA+ + LWP++GFF P IL V+F G++ + HF+P Sbjct: 47 EWLSTKLHAALWVVCAGLVAYFLDVFNVAFGDPRVHRLSFNVGLVCFGINCCITAYLAIWLPYVKKIDLEWSVYCPRMIPTATVAGLGCALGFIFGLWPIWGFFTPGILFVLFLGTLMTAHFLP 170
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|325189478|emb|CCA23966.1| (transmembrane protein putative [Albugo laibachii Nc14]) HSP 1 Score: 120.939 bits (302), Expect = 7.735e-31 Identity = 59/166 (35.54%), Postives = 91/166 (54.82%), Query Frame = 0 Query: 39 SSRASGSNVINPASLSVPPPSSSLPVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 + + ++++N A+ P + S+ +RAE++ S KL A WV+ + HY +FVHV+ D R+ +F++A+I GI CI YL ++L +K I +EW+ YCPRMIP AT G + C + WPVYG P IL + F S+ + HF+P Sbjct: 35 DNDSEEADLLNEAAY--PSEEHDENTAKKAHSRSRSQRAELY---STKLHALLWVVTALIAAHYLDFVHVICYDPRVRTAFFYVAVILSGIYACITCYLAIWLPYVKNIRLEWSVYCPRMIPTATLVGFSASFCFHCAFWPVYGVLTPAILSLFFIASLMTAHFLP 195
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|1214708072|gb|OWZ19395.1| (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 119.013 bits (297), Expect = 1.950e-30 Identity = 57/136 (41.91%), Postives = 84/136 (61.76%), Query Frame = 0 Query: 69 RTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 + S+ ++A +W S +L A WV + T+F V+ D R+NR +F +A+IC G+N+CI YL VYL IK I +EW+ YCPRMIP AT GVV A C + + WP++G P +L + F G++ + HF+P Sbjct: 35 QRASRSQQAALW---STRLHAFLWVAAAGLVAYGTDFFRVIFTDPRVNRGFFQVALICTGVNICITAYLAVYLPYIKRIQLEWSVYCPRMIPTATIVGVVAAFCYICAFWPIWGLLTPGLLGLFFIGTLMTAHFLP 167
BLAST of EWM28010.1 vs. NCBI_GenBank
Match: gi|669172553|ref|XP_008621625.1| (hypothetical protein SDRG_17166 [Saprolegnia diclina VS20] >gi|530726706|gb|EQC24948.1| hypothetical protein SDRG_17166 [Saprolegnia diclina VS20]) HSP 1 Score: 118.627 bits (296), Expect = 3.365e-30 Identity = 60/166 (36.14%), Postives = 94/166 (56.63%), Query Frame = 0 Query: 40 SRASGSNVINPASLSVPPPSSSL-PVVDGVRTTSKRERAEIWERISVKLQAGAWVLGMMATLHYTNFVHVVLDDERLNRVYFHLAMICLGINLCIGLYLTVYLQLIKGINIEWATYCPRMIPAATFSGVVCAICLVSSLWPVYGFFAPLILLVIFFGSMFSMHFIP 204 +RA + PA ++L ++ ++ S + E +S KL A WV G +Y + V V L D R++R+YF++ + G+N CI YL ++L ++ +++EW+ YCPRMIP AT G+V A+ + LWPV+GFF P IL V+F G + HF+P Sbjct: 3 TRAGSYQRLAPADTETESLDATLDEEIEDLKKRSLPKAPSKAEWLSTKLHALLWVAGACLLAYYLDVVRVALRDPRVHRLYFNIGVASAGVNGCITAYLALWLPYVRKVDLEWSVYCPRMIPTATVVGLVGALGFILGLWPVWGFFTPGILFVLFLGMLMMAHFLP 168 The following BLAST results are available for this feature:
BLAST of EWM28010.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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