EWM28032.1, cds2674 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|585110373|gb|EWM28032.1| (and ph domain-containing protein 6 [Nannochloropsis gaditana]) HSP 1 Score: 499.204 bits (1284), Expect = 7.781e-179 Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0 Query: 1 MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239 MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM Sbjct: 1 MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|309360073|emb|CAP31915.2| (Protein CBR-AKA-1 [Caenorhabditis briggsae]) HSP 1 Score: 70.4774 bits (171), Expect = 2.900e-10 Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0 Query: 52 QTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL 158 ++ P R RL++ S YW D E CML N + R+HHCRACG+V+C C S EK L L+ P ++RVC PC+ +SR+ Sbjct: 553 ESQPRRERRLTESELQLGKTSPYWIPDSECQNCMLCNVKFTIITRRHHCRACGRVLCGSCCS-------------EK--SVLDYLKEDGKKPQAVRVCKPCSTMLSRI 645
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|268530936|ref|XP_002630594.1| (C. briggsae CBR-AKA-1 protein [Caenorhabditis briggsae]) HSP 1 Score: 70.0922 bits (170), Expect = 3.588e-10 Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0 Query: 52 QTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL 158 ++ P R RL++ S YW D E CML N + R+HHCRACG+V+C C S EK L L+ P ++RVC PC+ +SR+ Sbjct: 537 ESQPRRERRLTESELQLGKTSPYWIPDSECQNCMLCNVKFTIITRRHHCRACGRVLCGSCCS-------------EK--SVLDYLKEDGKKPQAVRVCKPCSTMLSRI 629
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|308502876|ref|XP_003113622.1| (CRE-AKA-1 protein [Caenorhabditis remanei] >gi|308263581|gb|EFP07534.1| CRE-AKA-1 protein [Caenorhabditis remanei]) HSP 1 Score: 68.5514 bits (166), Expect = 1.288e-9 Identity = 40/131 (30.53%), Postives = 60/131 (45.80%), Query Frame = 0 Query: 46 QGNRGSQTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAV 175 + + +P R RL++ S YW D E CML N + R+HHCRACG+V+C C S EK L L+ ++RVC PC+ ++R I+A EE++ ++V Sbjct: 521 ESDSDESATPRRERRLTESELQLGKTSPYWIPDSECPHCMLCNTKFTIITRRHHCRACGRVLCGSCCS-------------EK--AVLDYLQEEGKKQQAVRVCKPCSTMLAR---IEAHEQEEQRRRESV 633
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|341899734|gb|EGT55669.1| (hypothetical protein CAEBREN_29530 [Caenorhabditis brenneri]) HSP 1 Score: 67.3958 bits (163), Expect = 2.709e-9 Identity = 40/135 (29.63%), Postives = 62/135 (45.93%), Query Frame = 0 Query: 46 QGNRGSQTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTP 179 + + +P R RL++ S YW D E CML N + R+HHCRACG+V+C C + EK L+ L+ P ++RVC PC+ ++R+ + E+++ E V D P Sbjct: 546 ESDSDESVAPRRERRLTESELQLGKTSPYWIPDSECPLCMLCNTKFTILTRRHHCRACGRVLCGSCCN-------------EK--AILEYLQEEGKKPQAVRVCKPCSSMLARIESHEQE--EQRRRESVVSDGP 663
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|673050411|ref|XP_008879166.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|574465162|gb|ETV92202.1| hypothetical protein, variant 3 [Aphanomyces invadans]) HSP 1 Score: 62.3882 bits (150), Expect = 1.164e-7 Identity = 49/182 (26.92%), Postives = 78/182 (42.86%), Query Frame = 0 Query: 67 ARNNKSY-WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL--------AVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239 A N +++ W D++ CM + + RKHHCR CG V+C +CS N RR + P +RVC PC ++ + TP E ++ D V + A R +LY+ + + + ++D + ++P+V TLTG S GQEW K + Sbjct: 10 AVNREAFKWVPDKDTAKCMNCHADFSMIHRKHHCRRCGHVVCSNCSP------NMRRMSPQD--------------PFPVRVCNPCYTALDEHLTSTMEWSGMSGHTPTEAERTPDPVAN------AGRVRIGQLYVKVVEAIGLPSKDVIANSIT--SDPFVKLTLTG-RWSHGQEWSKEL 162
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|673050405|ref|XP_008879163.1| (hypothetical protein H310_13437 [Aphanomyces invadans] >gi|574465159|gb|ETV92199.1| hypothetical protein H310_13437 [Aphanomyces invadans]) HSP 1 Score: 62.3882 bits (150), Expect = 1.308e-7 Identity = 49/182 (26.92%), Postives = 78/182 (42.86%), Query Frame = 0 Query: 67 ARNNKSY-WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL--------AVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239 A N +++ W D++ CM + + RKHHCR CG V+C +CS N RR + P +RVC PC ++ + TP E ++ D V + A R +LY+ + + + ++D + ++P+V TLTG S GQEW K + Sbjct: 10 AVNREAFKWVPDKDTAKCMNCHADFSMIHRKHHCRRCGHVVCSNCSP------NMRRMSPQD--------------PFPVRVCNPCYTALDEHLTSTMEWSGMSGHTPTEAERTPDPVAN------AGRVRIGQLYVKVVEAIGLPSKDVIANSIT--SDPFVKLTLTG-RWSHGQEWSKEL 162
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|620975416|ref|XP_007668317.1| (PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6, partial [Ornithorhynchus anatinus]) HSP 1 Score: 62.003 bits (149), Expect = 2.175e-7 Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 0 Query: 74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSS-YVGSEH--NTRRRITEK-FSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATP--LEEKKLEDAVKD 177 W D VT CML +T+R+HHCRACGK++CQ CSS G ++ N R+ E+ F K +P P S + ++S +V+Q+ P ++KK+ A+K+ Sbjct: 1210 WIPDTRVTMCMLCTSEFTLTWRRHHCRACGKIVCQACSSNNYGLDYLKNQPARVCERCFEQLQKQDHQHSPKPGSPANHKSTSSALS--SVLQSIPSGRKQKKIPAALKE 1317
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|685835956|emb|CEF70876.1| (FYVE zinc finger domain and Zinc finger, FYVE/PHD-type domain and Zinc finger, RING/FYVE/PHD-type domain and Zinc finger, FYVE-related domain and Domain of unknown function DUF3480 domain-containing protein [Strongyloides ratti]) HSP 1 Score: 61.6178 bits (148), Expect = 2.257e-7 Identity = 33/112 (29.46%), Postives = 48/112 (42.86%), Query Frame = 0 Query: 74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYAL 185 W D+E +CML N + R+HHCR+CG+V+C C N RR LR A RVC C +I+R+ I+ E+ + D + +L Sbjct: 470 WIDDKEADSCMLCNTKFSIILRRHHCRSCGRVLCNSCC-------NQRRS-----------LRFANDDTKKFRVCESCIKTINRVEEIEKREREQFSMNSLQHDAELLAASL 563
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|1173944727|gb|OQR93429.1| (hypothetical protein ACHHYP_02530 [Achlya hypogyna]) HSP 1 Score: 60.4622 bits (145), Expect = 4.987e-7 Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 0 Query: 74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISR----LAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEW 235 W D+E CM N V RKHHCR CG V+C++CS + RR++ + P +RVC PC ++ L T E ++ D V + V + +LY+ + + + + D + ++P+V LTG S GQEW Sbjct: 18 WIPDKEAEKCMNCNSEFTVFNRKHHCRRCGHVVCKNCSPNI-------RRVSPQ-------------DPFPVRVCNPCYTAVDEHFTSLEWSGHTTTEAERSPDPVANGRVHI-------GQLYVKVVEAIGLPSTDSIANSIT--SDPFVKVILTG-RWSHGQEW 153 The following BLAST results are available for this feature:
BLAST of EWM28032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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