EWM28032.1, cds2674 (CDS) Nannochloropsis gaditana

Overview
NameEWM28032.1
Unique Namecds2674
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:954317..954455 +
Alignment locationCM002459.1:954655..954869 +
Alignment locationCM002459.1:954921..955286 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28032.1
Productand ph domain-containing protein 6
Orig transcript idgnl|cribi|Naga_100008g51.7924.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:954317..954455 +
CM002459.1supercontigCM002459.1:954655..954869 +
CM002459.1supercontigCM002459.1:954921..955286 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR011011Znf_FYVE_PHD
IPR017455Znf_FYVE-rel
IPR013083Znf_RING/FYVE/PHD
IPR000306Znf_FYVE
Homology
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|585110373|gb|EWM28032.1| (and ph domain-containing protein 6 [Nannochloropsis gaditana])

HSP 1 Score: 499.204 bits (1284), Expect = 7.781e-179
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239
            MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM
Sbjct:    1 MTQISFDFAFGTIFSGISTVHFTIIVAHAMSASSVSADAGPTSGSQGNRGSQTSPTRPSRLSQRRWARNNKSYWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|309360073|emb|CAP31915.2| (Protein CBR-AKA-1 [Caenorhabditis briggsae])

HSP 1 Score: 70.4774 bits (171), Expect = 2.900e-10
Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0
Query:   52 QTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL 158
            ++ P R  RL++        S YW  D E   CML N    +  R+HHCRACG+V+C  C S             EK    L  L+     P ++RVC PC+  +SR+
Sbjct:  553 ESQPRRERRLTESELQLGKTSPYWIPDSECQNCMLCNVKFTIITRRHHCRACGRVLCGSCCS-------------EK--SVLDYLKEDGKKPQAVRVCKPCSTMLSRI 645          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|268530936|ref|XP_002630594.1| (C. briggsae CBR-AKA-1 protein [Caenorhabditis briggsae])

HSP 1 Score: 70.0922 bits (170), Expect = 3.588e-10
Identity = 37/108 (34.26%), Postives = 51/108 (47.22%), Query Frame = 0
Query:   52 QTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL 158
            ++ P R  RL++        S YW  D E   CML N    +  R+HHCRACG+V+C  C S             EK    L  L+     P ++RVC PC+  +SR+
Sbjct:  537 ESQPRRERRLTESELQLGKTSPYWIPDSECQNCMLCNVKFTIITRRHHCRACGRVLCGSCCS-------------EK--SVLDYLKEDGKKPQAVRVCKPCSTMLSRI 629          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|308502876|ref|XP_003113622.1| (CRE-AKA-1 protein [Caenorhabditis remanei] >gi|308263581|gb|EFP07534.1| CRE-AKA-1 protein [Caenorhabditis remanei])

HSP 1 Score: 68.5514 bits (166), Expect = 1.288e-9
Identity = 40/131 (30.53%), Postives = 60/131 (45.80%), Query Frame = 0
Query:   46 QGNRGSQTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAV 175
            + +     +P R  RL++        S YW  D E   CML N    +  R+HHCRACG+V+C  C S             EK    L  L+       ++RVC PC+  ++R   I+A   EE++  ++V
Sbjct:  521 ESDSDESATPRRERRLTESELQLGKTSPYWIPDSECPHCMLCNTKFTIITRRHHCRACGRVLCGSCCS-------------EK--AVLDYLQEEGKKQQAVRVCKPCSTMLAR---IEAHEQEEQRRRESV 633          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|341899734|gb|EGT55669.1| (hypothetical protein CAEBREN_29530 [Caenorhabditis brenneri])

HSP 1 Score: 67.3958 bits (163), Expect = 2.709e-9
Identity = 40/135 (29.63%), Postives = 62/135 (45.93%), Query Frame = 0
Query:   46 QGNRGSQTSPTRPSRLSQRRWARNNKS-YWSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTP 179
            + +     +P R  RL++        S YW  D E   CML N    +  R+HHCRACG+V+C  C +             EK    L+ L+     P ++RVC PC+  ++R+   +    E+++ E  V D P
Sbjct:  546 ESDSDESVAPRRERRLTESELQLGKTSPYWIPDSECPLCMLCNTKFTILTRRHHCRACGRVLCGSCCN-------------EK--AILEYLQEEGKKPQAVRVCKPCSSMLARIESHEQE--EQRRRESVVSDGP 663          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|673050411|ref|XP_008879166.1| (hypothetical protein, variant 3 [Aphanomyces invadans] >gi|574465162|gb|ETV92202.1| hypothetical protein, variant 3 [Aphanomyces invadans])

HSP 1 Score: 62.3882 bits (150), Expect = 1.164e-7
Identity = 49/182 (26.92%), Postives = 78/182 (42.86%), Query Frame = 0
Query:   67 ARNNKSY-WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL--------AVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239
            A N +++ W  D++   CM  +    +  RKHHCR CG V+C +CS       N RR   +               P  +RVC PC  ++            +   TP E ++  D V +      A   R  +LY+  +  + + ++D    +    ++P+V  TLTG   S GQEW K +
Sbjct:   10 AVNREAFKWVPDKDTAKCMNCHADFSMIHRKHHCRRCGHVVCSNCSP------NMRRMSPQD--------------PFPVRVCNPCYTALDEHLTSTMEWSGMSGHTPTEAERTPDPVAN------AGRVRIGQLYVKVVEAIGLPSKDVIANSIT--SDPFVKLTLTG-RWSHGQEWSKEL 162          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|673050405|ref|XP_008879163.1| (hypothetical protein H310_13437 [Aphanomyces invadans] >gi|574465159|gb|ETV92199.1| hypothetical protein H310_13437 [Aphanomyces invadans])

HSP 1 Score: 62.3882 bits (150), Expect = 1.308e-7
Identity = 49/182 (26.92%), Postives = 78/182 (42.86%), Query Frame = 0
Query:   67 ARNNKSY-WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRL--------AVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEWPKTM 239
            A N +++ W  D++   CM  +    +  RKHHCR CG V+C +CS       N RR   +               P  +RVC PC  ++            +   TP E ++  D V +      A   R  +LY+  +  + + ++D    +    ++P+V  TLTG   S GQEW K +
Sbjct:   10 AVNREAFKWVPDKDTAKCMNCHADFSMIHRKHHCRRCGHVVCSNCSP------NMRRMSPQD--------------PFPVRVCNPCYTALDEHLTSTMEWSGMSGHTPTEAERTPDPVAN------AGRVRIGQLYVKVVEAIGLPSKDVIANSIT--SDPFVKLTLTG-RWSHGQEWSKEL 162          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|620975416|ref|XP_007668317.1| (PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6, partial [Ornithorhynchus anatinus])

HSP 1 Score: 62.003 bits (149), Expect = 2.175e-7
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 0
Query:   74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSS-YVGSEH--NTRRRITEK-FSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATP--LEEKKLEDAVKD 177
            W  D  VT CML      +T+R+HHCRACGK++CQ CSS   G ++  N   R+ E+ F    K     +P P S       + ++S  +V+Q+ P   ++KK+  A+K+
Sbjct: 1210 WIPDTRVTMCMLCTSEFTLTWRRHHCRACGKIVCQACSSNNYGLDYLKNQPARVCERCFEQLQKQDHQHSPKPGSPANHKSTSSALS--SVLQSIPSGRKQKKIPAALKE 1317          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|685835956|emb|CEF70876.1| (FYVE zinc finger domain and Zinc finger, FYVE/PHD-type domain and Zinc finger, RING/FYVE/PHD-type domain and Zinc finger, FYVE-related domain and Domain of unknown function DUF3480 domain-containing protein [Strongyloides ratti])

HSP 1 Score: 61.6178 bits (148), Expect = 2.257e-7
Identity = 33/112 (29.46%), Postives = 48/112 (42.86%), Query Frame = 0
Query:   74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISRLAVIQATPLEEKKLEDAVKDTPVCVYAL 185
            W  D+E  +CML N    +  R+HHCR+CG+V+C  C        N RR            LR A       RVC  C  +I+R+  I+    E+  +     D  +   +L
Sbjct:  470 WIDDKEADSCMLCNTKFSIILRRHHCRSCGRVLCNSCC-------NQRRS-----------LRFANDDTKKFRVCESCIKTINRVEEIEKREREQFSMNSLQHDAELLAASL 563          
BLAST of EWM28032.1 vs. NCBI_GenBank
Match: gi|1173944727|gb|OQR93429.1| (hypothetical protein ACHHYP_02530 [Achlya hypogyna])

HSP 1 Score: 60.4622 bits (145), Expect = 4.987e-7
Identity = 46/166 (27.71%), Postives = 71/166 (42.77%), Query Frame = 0
Query:   74 WSADEEVTACMLYNRSLMVTFRKHHCRACGKVICQHCSSYVGSEHNTRRRITEKFSIALKLLRAAAPPPASIRVCPPCADSISR----LAVIQATPLEEKKLEDAVKDTPVCVYALYPRTEELYIGSLSVVCIQARDRAGRNGQGLTNPYVAGTLTGYTLSRGQEW 235
            W  D+E   CM  N    V  RKHHCR CG V+C++CS  +       RR++ +              P  +RVC PC  ++      L     T  E ++  D V +  V +        +LY+  +  + + + D    +    ++P+V   LTG   S GQEW
Sbjct:   18 WIPDKEAEKCMNCNSEFTVFNRKHHCRRCGHVVCKNCSPNI-------RRVSPQ-------------DPFPVRVCNPCYTAVDEHFTSLEWSGHTTTEAERSPDPVANGRVHI-------GQLYVKVVEAIGLPSTDSIANSIT--SDPFVKVILTG-RWSHGQEW 153          
The following BLAST results are available for this feature:
BLAST of EWM28032.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110373|gb|EWM28032.1|7.781e-179100.00and ph domain-containing protein 6 [Nannochloropsi... [more]
gi|309360073|emb|CAP31915.2|2.900e-1034.26Protein CBR-AKA-1 [Caenorhabditis briggsae][more]
gi|268530936|ref|XP_002630594.1|3.588e-1034.26C. briggsae CBR-AKA-1 protein [Caenorhabditis brig... [more]
gi|308502876|ref|XP_003113622.1|1.288e-930.53CRE-AKA-1 protein [Caenorhabditis remanei] >gi|308... [more]
gi|341899734|gb|EGT55669.1|2.709e-929.63hypothetical protein CAEBREN_29530 [Caenorhabditis... [more]
gi|673050411|ref|XP_008879166.1|1.164e-726.92hypothetical protein, variant 3 [Aphanomyces invad... [more]
gi|673050405|ref|XP_008879163.1|1.308e-726.92hypothetical protein H310_13437 [Aphanomyces invad... [more]
gi|620975416|ref|XP_007668317.1|2.175e-735.45PREDICTED: FYVE, RhoGEF and PH domain-containing p... [more]
gi|685835956|emb|CEF70876.1|2.257e-729.46FYVE zinc finger domain and Zinc finger, FYVE/PHD-... [more]
gi|1173944727|gb|OQR93429.1|4.987e-727.71hypothetical protein ACHHYP_02530 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2682rna2682Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications