EWM27959.1, cds2655 (CDS) Nannochloropsis gaditana

Overview
NameEWM27959.1
Unique Namecds2655
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:908088..911282 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27959.1
Productult-like transcription factor
Orig transcript idgnl|cribi|Naga_100008g30.7851.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:908088..911282 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR017923TFIIS_N
Homology
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BLAST of EWM27959.1 vs. NCBI_GenBank
Match: gi|585110300|gb|EWM27959.1| (ult-like transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 2168.66 bits (5618), Expect = 0.000e+0
Identity = 1064/1064 (100.00%), Postives = 1064/1064 (100.00%), Query Frame = 0 
Query:    1 MDGEGDFTFMPALGEAASYPSPSPSSEAGNAESMDVVAGTEQPLGLGETPLVASHHHPLLSTPNPNTPCGGMDTECSLTSFLFQGDVIDAVQLSQDVVDSDAMEITEAREISSSVDAFDAPAIPCDTLTSLEDNGRDDDPFLSTLQDITMNVGADSEHSLVKELAGATKEASGIDAPTAFPDVLLSTFTSHTDMENRQENEDIIKATTPQEEAGGSGTLSETPTESNVAGKVEGEMEPSRAGDAFSVLPAASPAAFTCVTPSQKIEAGTPSGPLPQGEVMNRIAQGQAALVQSQSNQLRALVLWIATAPRLGLSESEPAYATFLHRRRPQSSRGACHIIDELEARLMQCFDARGRISRESAGDAVLDLMLQATSDENKVLLIEVLKTSTDTAVLERLVHNGVLRVLKHWVLEYNQATDDQAVLRFLLETLRDLPVTYESLRGSGLVALITKIKKDKLGGESLDKGRRSLGRLAEEVRTAWKKRVKEAAGASSPNAPLPPRLVPRHSVPPNAPKPGTESTGATVSDAETLSRPSISLSSGASSRPVNTDEGAGAATSESAPIKRRESERKRPIVSSTCPTGRTGLEDGRGPSGPARPKPKLGPTAAASDTLASTPSSHRRADGAGGNNGDAKGHRRVVWRDEKGGDLMDVLTFDVEEEVGGGEGGDWSEGTRHDRIRALAMRERQKEMELFKNVGGWSALGEQVKGRNGAKRGAGAKDVGRQALTPTTAWRALERLVVPHEKGGKRIEDGKSVVLRTPETVRLDAAQKLLLEVRYIRDGDIPFTPSEGLTVHAPQEGFTISPTIAFRFSTREGDVATSNASRGSVATGNSSAENVHVPLIPDTIKGIEILKNVPGWIRERLLANGNEVLHFCLASTSGFQKEIDQQKVYDVVRLLQAAETVRLEPHVQTRLCRNPSRFLPCVSSDGGLDMGLLARAFAEEDREEEQQFRIQQQQQQRDRNIPFHKMGGSGEETGRETGSHIRQSPLGETYSPPPRTSAYSMPHASGLRSSPGPVPPEDPLSERHVPRFWKPCKYFAPRKGAGSCRFGNRCRYLHEGISVRHGEQR 1064
            MDGEGDFTFMPALGEAASYPSPSPSSEAGNAESMDVVAGTEQPLGLGETPLVASHHHPLLSTPNPNTPCGGMDTECSLTSFLFQGDVIDAVQLSQDVVDSDAMEITEAREISSSVDAFDAPAIPCDTLTSLEDNGRDDDPFLSTLQDITMNVGADSEHSLVKELAGATKEASGIDAPTAFPDVLLSTFTSHTDMENRQENEDIIKATTPQEEAGGSGTLSETPTESNVAGKVEGEMEPSRAGDAFSVLPAASPAAFTCVTPSQKIEAGTPSGPLPQGEVMNRIAQGQAALVQSQSNQLRALVLWIATAPRLGLSESEPAYATFLHRRRPQSSRGACHIIDELEARLMQCFDARGRISRESAGDAVLDLMLQATSDENKVLLIEVLKTSTDTAVLERLVHNGVLRVLKHWVLEYNQATDDQAVLRFLLETLRDLPVTYESLRGSGLVALITKIKKDKLGGESLDKGRRSLGRLAEEVRTAWKKRVKEAAGASSPNAPLPPRLVPRHSVPPNAPKPGTESTGATVSDAETLSRPSISLSSGASSRPVNTDEGAGAATSESAPIKRRESERKRPIVSSTCPTGRTGLEDGRGPSGPARPKPKLGPTAAASDTLASTPSSHRRADGAGGNNGDAKGHRRVVWRDEKGGDLMDVLTFDVEEEVGGGEGGDWSEGTRHDRIRALAMRERQKEMELFKNVGGWSALGEQVKGRNGAKRGAGAKDVGRQALTPTTAWRALERLVVPHEKGGKRIEDGKSVVLRTPETVRLDAAQKLLLEVRYIRDGDIPFTPSEGLTVHAPQEGFTISPTIAFRFSTREGDVATSNASRGSVATGNSSAENVHVPLIPDTIKGIEILKNVPGWIRERLLANGNEVLHFCLASTSGFQKEIDQQKVYDVVRLLQAAETVRLEPHVQTRLCRNPSRFLPCVSSDGGLDMGLLARAFAEEDREEEQQFRIQQQQQQRDRNIPFHKMGGSGEETGRETGSHIRQSPLGETYSPPPRTSAYSMPHASGLRSSPGPVPPEDPLSERHVPRFWKPCKYFAPRKGAGSCRFGNRCRYLHEGISVRHGEQR
Sbjct:    1 MDGEGDFTFMPALGEAASYPSPSPSSEAGNAESMDVVAGTEQPLGLGETPLVASHHHPLLSTPNPNTPCGGMDTECSLTSFLFQGDVIDAVQLSQDVVDSDAMEITEAREISSSVDAFDAPAIPCDTLTSLEDNGRDDDPFLSTLQDITMNVGADSEHSLVKELAGATKEASGIDAPTAFPDVLLSTFTSHTDMENRQENEDIIKATTPQEEAGGSGTLSETPTESNVAGKVEGEMEPSRAGDAFSVLPAASPAAFTCVTPSQKIEAGTPSGPLPQGEVMNRIAQGQAALVQSQSNQLRALVLWIATAPRLGLSESEPAYATFLHRRRPQSSRGACHIIDELEARLMQCFDARGRISRESAGDAVLDLMLQATSDENKVLLIEVLKTSTDTAVLERLVHNGVLRVLKHWVLEYNQATDDQAVLRFLLETLRDLPVTYESLRGSGLVALITKIKKDKLGGESLDKGRRSLGRLAEEVRTAWKKRVKEAAGASSPNAPLPPRLVPRHSVPPNAPKPGTESTGATVSDAETLSRPSISLSSGASSRPVNTDEGAGAATSESAPIKRRESERKRPIVSSTCPTGRTGLEDGRGPSGPARPKPKLGPTAAASDTLASTPSSHRRADGAGGNNGDAKGHRRVVWRDEKGGDLMDVLTFDVEEEVGGGEGGDWSEGTRHDRIRALAMRERQKEMELFKNVGGWSALGEQVKGRNGAKRGAGAKDVGRQALTPTTAWRALERLVVPHEKGGKRIEDGKSVVLRTPETVRLDAAQKLLLEVRYIRDGDIPFTPSEGLTVHAPQEGFTISPTIAFRFSTREGDVATSNASRGSVATGNSSAENVHVPLIPDTIKGIEILKNVPGWIRERLLANGNEVLHFCLASTSGFQKEIDQQKVYDVVRLLQAAETVRLEPHVQTRLCRNPSRFLPCVSSDGGLDMGLLARAFAEEDREEEQQFRIQQQQQQRDRNIPFHKMGGSGEETGRETGSHIRQSPLGETYSPPPRTSAYSMPHASGLRSSPGPVPPEDPLSERHVPRFWKPCKYFAPRKGAGSCRFGNRCRYLHEGISVRHGEQR 1064
The following BLAST results are available for this feature:
BLAST of EWM27959.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585110300|gb|EWM27959.1|0.000e+0100.00ult-like transcription factor [Nannochloropsis gad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2663rna2663Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications