EWM28024.1, cds2654 (CDS) Nannochloropsis gaditana

Overview
NameEWM28024.1
Unique Namecds2654
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:904704..904760 +
Alignment locationCM002459.1:904885..906222 +
Alignment locationCM002459.1:906353..906928 +
Alignment locationCM002459.1:907080..907328 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28024.1
Productatp-dependent clp protease atp-binding subunit
Orig transcript idgnl|cribi|Naga_100008g28.7916.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:904704..904760 +
CM002459.1supercontigCM002459.1:904885..906222 +
CM002459.1supercontigCM002459.1:906353..906928 +
CM002459.1supercontigCM002459.1:907080..907328 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0051082unfolded protein binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0006457protein folding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR004487Clp_protease_ATP-bd_su_ClpX
IPR019489Clp_ATPase_C
IPR003593AAA+_ATPase
Homology
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|585110365|gb|EWM28024.1| (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 1510.35 bits (3909), Expect = 0.000e+0
Identity = 739/739 (100.00%), Postives = 739/739 (100.00%), Query Frame = 0
Query:    1 MLGSCGRSASRQAIWRLRKVKLTLACNRSWLSSALPRSGNSSIIHASSVSDSSPSSEVQCQAAAPEQQQAQLTRPRHNHAHEGYQQQVDCKLIVRTPAVTSLPSLPPEQPRQSFRCPRCANYLATAIDASGGTDGTYFCSVCSIWVLSTGQGSCEKAFYLPSPADSVLQRKVNNPPPPSSPPPAPEGPFFPAAKPGLPSPGSNPPPGSPDDPFMTQHASHSNNFPPARAAPDTHVPPHGQGPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKVRLLHEPMTLSKYLAEMQGEHPHHGMAPVEGDGPEDDHHGHQHQQPQSMVGGV 739
            MLGSCGRSASRQAIWRLRKVKLTLACNRSWLSSALPRSGNSSIIHASSVSDSSPSSEVQCQAAAPEQQQAQLTRPRHNHAHEGYQQQVDCKLIVRTPAVTSLPSLPPEQPRQSFRCPRCANYLATAIDASGGTDGTYFCSVCSIWVLSTGQGSCEKAFYLPSPADSVLQRKVNNPPPPSSPPPAPEGPFFPAAKPGLPSPGSNPPPGSPDDPFMTQHASHSNNFPPARAAPDTHVPPHGQGPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKVRLLHEPMTLSKYLAEMQGEHPHHGMAPVEGDGPEDDHHGHQHQQPQSMVGGV
Sbjct:    1 MLGSCGRSASRQAIWRLRKVKLTLACNRSWLSSALPRSGNSSIIHASSVSDSSPSSEVQCQAAAPEQQQAQLTRPRHNHAHEGYQQQVDCKLIVRTPAVTSLPSLPPEQPRQSFRCPRCANYLATAIDASGGTDGTYFCSVCSIWVLSTGQGSCEKAFYLPSPADSVLQRKVNNPPPPSSPPPAPEGPFFPAAKPGLPSPGSNPPPGSPDDPFMTQHASHSNNFPPARAAPDTHVPPHGQGPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKVRLLHEPMTLSKYLAEMQGEHPHHGMAPVEGDGPEDDHHGHQHQQPQSMVGGV 739          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|970654597|gb|KUF92890.1| (ATP-dependent Clp protease ATP-binding subunit ClpX [Phytophthora nicotianae] >gi|970664582|gb|KUG01466.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Phytophthora nicotianae])

HSP 1 Score: 483.026 bits (1242), Expect = 3.019e-160
Identity = 255/472 (54.03%), Postives = 325/472 (68.86%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQE-LAG-------DIDPTLLATPGM-----HIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQ 704
            R+LTP++IY GL+EYVIGQ  VK  LAVGVHNHYKRL         ++ E   +  ++ SQ   AG       D+D + L++ G       I P      + VP +    +S      ++ +P           R    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD   V A+ VD EA+  RK   L+   MTL +YL  ++
Sbjct:   54 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQHPRAGGVTRQHVDMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQNSKQHASEE----TAEAPKTTETTHTHATRLQHHSLGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGVMTLDEYLKNLE 519          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|568042950|gb|ETM40261.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica])

HSP 1 Score: 480.715 bits (1236), Expect = 4.312e-157
Identity = 255/474 (53.80%), Postives = 325/474 (68.57%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCR----APPARQQEQEQSTQSSLSQELAGDIDPTLLATPGM-----HIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQGE 706
            R+LTP++IY GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R    A  A+     Q  ++        D+D + L++ G       I P      + VP +    +S      ++ +P           R    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD   V A+ VD EA+  RK   L+   MTL +YL  ++ +
Sbjct:  214 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQHPRAGGVTRQHVDMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQNSKQHASEE----TAEAPKTTETTHTHATRLQHHSLGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGEMTLDEYLKNLEDD 681          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|1214697327|gb|OWZ10628.1| (ATP-dependent Clp protease [Phytophthora megakarya])

HSP 1 Score: 479.559 bits (1233), Expect = 8.766e-157
Identity = 266/514 (51.75%), Postives = 339/514 (65.95%), Query Frame = 0
Query:  219 SHSNNFP----PARAAPDTHVPP--------HGQGPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCR----APPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPP---PPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPR-QSEGEGN-VKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQGE 706
            ++S NFP    P+R   D              G       R+LTP++IY+GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R    A  A+     Q  ++        D+D + L++ G  +      P           S Q +S + + +S +PL      P      R Q    G+ ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  +T ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS E+L++VLTEP+N+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MFD+PD   V A+ VD EA+  RK   L+   MTL +YL  ++ E
Sbjct:  169 TYSGNFPSPTRPSRMNADGEYEKLANEALFSAGDTTVTKDRVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHPAGTQHPRAGGVTRQHVDMDDSRLSSIGRRLLLEEIYPGAEKRDEASQSSKQHTSEDTAETSETPL------PAHTHATRLQHHTLGDKLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITINTTNILFICGGAFAGLEKQVTSRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKEELVQVLTEPRNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFDMPDMKDVRAVYVDEEAILGRKRPVLVRGDMTLDEYLKNLEEE 675          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|675201991|ref|XP_008909880.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica INRA-310] >gi|568090106|gb|ETN04943.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica INRA-310])

HSP 1 Score: 479.945 bits (1234), Expect = 9.066e-157
Identity = 255/474 (53.80%), Postives = 325/474 (68.57%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCR----APPARQQEQEQSTQSSLSQELAGDIDPTLLATPGM-----HIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQGE 706
            R+LTP++IY GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R    A  A+     Q  ++        D+D + L++ G       I P      + VP +    +S      ++ +P           R    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD   V A+ VD EA+  RK   L+   MTL +YL  ++ +
Sbjct:  214 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQHPRAGGVTRQHVDMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQNSKQHASEE----TAEAPKTTETTHTHATRLQHHSLGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGVMTLDEYLKNLEDD 681          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|566017367|gb|ETI40278.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1569] >gi|567954753|gb|ETK80386.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|567983418|gb|ETL33811.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|568012912|gb|ETL87089.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica] >gi|570321047|gb|ETO68995.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P1976] >gi|570944846|gb|ETP10103.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica CJ01A1] >gi|570976365|gb|ETP38190.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Phytophthora parasitica P10297])

HSP 1 Score: 479.559 bits (1233), Expect = 1.061e-156
Identity = 255/474 (53.80%), Postives = 325/474 (68.57%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCR----APPARQQEQEQSTQSSLSQELAGDIDPTLLATPGM-----HIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQGE 706
            R+LTP++IY GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R    A  A+     Q  ++        D+D + L++ G       I P      + VP +    +S      ++ +P           R    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MF++PD   V A+ VD EA+  RK   L+   MTL +YL  ++ +
Sbjct:  210 RVLTPREIYDGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQHPRAGGVTRQHVDMDDSRLSSIGRRLLLEEIYPGSEKNDAEVPQNSKQHASEE----TAEAPKTTETTHTHATRLQHHSLGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFELPDMNDVRAVYVDEEAILGRKRPVLIRGEMTLDEYLKNLEDD 677          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|695391535|ref|XP_009520055.1| (hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae] >gi|348684952|gb|EGZ24767.1| hypothetical protein PHYSODRAFT_554819 [Phytophthora sojae])

HSP 1 Score: 479.559 bits (1233), Expect = 1.599e-156
Identity = 253/468 (54.06%), Postives = 326/468 (69.66%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMH-----IPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQ 704
            R+LTP++IY+GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R        ++Q  ++        D+D + L++ G       I P      + +  +   +++      S ++     H    R +    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG++I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  ALSKNTGARGLRSI ER LM+ MFD+PD   V A+ VD EA+  RK   L+   MTL +YL  ++
Sbjct:  230 RVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKDAEAACAKQQHARAGGVTRQHVDLDDSRLSSIGRRLLLEEIYPGLEKKEAGLEQEAKQRAAEGTSETSEAAAAAPSHAHATRLQ--HHSLGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEYITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSDQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALSKNTGARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGRKRPVLIRGDMTLDEYLKNLE 693          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|301118793|ref|XP_002907124.1| (ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4] >gi|262105636|gb|EEY63688.1| ATP-dependent Clp protease ATP-binding subunit clpX [Phytophthora infestans T30-4])

HSP 1 Score: 475.707 bits (1223), Expect = 4.121e-155
Identity = 256/475 (53.89%), Postives = 324/475 (68.21%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRL----AVQCR----APPARQQEQEQSTQSSLSQELAGDIDPTLLATPGM-----HIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAV--HSRKVRLLHEPMTLSKYLAEMQGE 706
            R+LTP++IY+GL+EYVIGQ  VK  LAVGVHNHYKRL     +Q R    A  A+     Q  ++        D+D   L+  G       I P      + +PP     +S     ++ ++            R    S G+  ++ ++ VELDKTN++L+GPTGSGKTLLAKTLARL  VP +IADATCLTQAGYVGEDVES+L+KLY  A  +LE  QRGIVYIDEIDK++RKSENVSITRDVSGEGVQQALLKI+EGS+VNVP++GGRKNPRG+ I  DT ++LFICGGAFAGLE  +T R S +SIGFGA + P   L+          + EP DLV YG++PEF+GRFP++VST+GLS ++L++VLTEPKN+L++QY+ LFAL  VEFH T  ALE +A  AL KNTGARGLRSI ER LM+ MFD+PD   V A+ VD EA+  H R V L+   MTL +YL  ++ +
Sbjct:  217 RVLTPREIYEGLNEYVIGQDKVKKTLAVGVHNHYKRLHALELLQARKEAEAACAKHNASSQHPRAGGVTRQHVDMDDPRLSNIGRRLLLEEIYPGSDKNDAEMPPTSKQHASEETAEVTKTTE----TTHTHATRLQHHSMGD-KLQYLEGVELDKTNVMLVGPTGSGKTLLAKTLARLAKVPIVIADATCLTQAGYVGEDVESVLFKLYQAANYNLEATQRGIVYIDEIDKITRKSENVSITRDVSGEGVQQALLKILEGSMVNVPEKGGRKNPRGEHITIDTTNILFICGGAFAGLEKQVTRRTSRSSIGFGAQM-PNMRLKDSNQIGQLLSQAEPEDLVSYGLIPEFIGRFPMLVSTTGLSKDELVQVLTEPKNSLVRQYKALFALSDVEFHATEGALEAVAESALRKNTGARGLRSIFERALMETMFDLPDMNDVRAVYVDEEAILGHKRPV-LIRGEMTLDEYLKNLEDD 684          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|673043911|ref|XP_008875916.1| (ATP-dependent Clp protease, ATP-binding subunit ClpX [Aphanomyces invadans] >gi|574468196|gb|ETV95215.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Aphanomyces invadans])

HSP 1 Score: 471.47 bits (1212), Expect = 1.111e-154
Identity = 259/518 (50.00%), Postives = 330/518 (63.71%), Query Frame = 0
Query:  207 GSPDDPFMT---QHASHSNNFPPARAAPDTH---VPPHGQGPPPT-----FRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGPRQSEGEGNVKQVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRVEPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAE----MQGEHP 708
            G P   F T    H SH +N    R   ++    +   G   P        ++LTP+QI+ GL+ YVIGQ AVK AL+VGVHNHYKRL++  +   A   EQ + T  SL                G+H+         ++  DP  +S                                    + D VELDKTN++++GPTGSGKTL+AKTLAR+  VP +IADATCLTQAGYVGEDVESIL+KLY  A  D++ AQRGIVYIDEIDK+SRKSENVSITRDVSGEGVQQALLK++EG VVNVP++GGRKNPRG+FI  DT ++LFICGGAFAGLE  ++ R +++SIGFGA + P   L+          + EP DLV YG++PEFVGRFPVVVST GLS ++L+RVLTEPKN+L+KQY+ LFAL+ VEFHV+   LE +A LA+ +NTGARGLR+I ER L++ MF IPD P V A+ VD + +  RK   L+   ++L+ YL+E     + EHP
Sbjct:  143 GGPSSGFSTYGGDHTSHMSNVSGPRLTSESEYNRIVHQGTVAPAVQSERQEQVLTPRQIFDGLNTYVIGQDAVKKALSVGVHNHYKRLSMHAKKKKA-SAEQNRGTIHSLGH--------------GVHV--------EAINADPRLESRP----------------------------------KADEVELDKTNMMIVGPTGSGKTLMAKTLARMAQVPLVIADATCLTQAGYVGEDVESILFKLYQAANYDVDAAQRGIVYIDEIDKISRKSENVSITRDVSGEGVQQALLKMLEGCVVNVPEKGGRKNPRGEFISIDTTNILFICGGAFAGLEKIVSRRTASSSIGFGARM-PNTKLDELDNIGQLLTQSEPQDLVSYGLIPEFVGRFPVVVSTLGLSQDELVRVLTEPKNSLVKQYQALFALNDVEFHVSRCGLEAVADLAVQRNTGARGLRAIFERALVETMFHIPDMPNVNAVYVDSDVIAGRKQPVLIRNDVSLADYLSEKDKAYEVEHP 602          
BLAST of EWM28024.1 vs. NCBI_GenBank
Match: gi|1173940999|gb|OQR90264.1| (ATP-dependent Clp protease ATP-binding subunit clpX [Thraustotheca clavata])

HSP 1 Score: 468.389 bits (1204), Expect = 8.064e-154
Identity = 250/476 (52.52%), Postives = 311/476 (65.34%), Query Frame = 0
Query:  247 RLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQSTQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSP----LREFH--PSPFRRRGPRQSEGEGNVK-QVDPVELDKTNILLIGPTGSGKTLLAKTLARLIDVPFIIADATCLTQAGYVGEDVESILYKLYLEAGQDLERAQRGIVYIDEIDKVSRKSENVSITRDVSGEGVQQALLKIVEGSVVNVPKEGGRKNPRGDFIQFDTNDVLFICGGAFAGLEHTITHRLSAASIGFGATVRPKAALEGQAAQSDTYDRV-------EPCDLVHYGILPEFVGRFPVVVSTSGLSLEQLIRVLTEPKNALIKQYRYLFALHHVEFHVTNAALEEIAALALSKNTGARGLRSILERVLMQAMFDIPDEPQVTAIVVDHEAVHSRKV-RLLHEPMTLSKYLAEMQGEH 707
            ++LTP++IY GL++YVIGQ  VK ALAVGVHNHYKRL++  +                                       P  P PS+    P       +P +  S      L      P   +  G    + + + K  +D VE+DKTNIL++GPTGSGKTL+AKTLARL  VP +IADATCLTQAGYVGEDVESILYKLY  A  D+E  QRGI+YIDEIDK+SRKSENVSITRDVSGEGVQQALLK++EG  VNVP++GGRKNPRG+FI  DT ++LFICGGAFAGLEH ++ R + +SIGF AT++     E         DRV       EP DLV YG++PEFVGRFPV+VST GL+  +L+RV++EPKN+LIKQY+ LF+LH V FHVT+  L  IA LA+ +NTGARGLR+ILER LM+ MF IPD   V A+ VD E +  +K   L+ + +TL +YLAE    H
Sbjct:  146 KVLTPREIYDGLNKYVIGQDNVKKALAVGVHNHYKRLSMNMK---------------------------------------PKAPEPSAFDDHPKSLKMPEDPPVYQSMKHGIQLEAIAVPPGALKNEGNAAEQKKHDKKISMDEVEIDKTNILVVGPTGSGKTLMAKTLARLAQVPLVIADATCLTQAGYVGEDVESILYKLYQAANFDVEATQRGIIYIDEIDKISRKSENVSITRDVSGEGVQQALLKMLEGCTVNVPEKGGRKNPRGEFISIDTTNILFICGGAFAGLEHIVSRRTAQSSIGFDATMKDTKVTE--------LDRVGQLLTQSEPQDLVAYGLIPEFVGRFPVLVSTLGLNRPELVRVVSEPKNSLIKQYKALFSLHEVNFHVTDCGLNAIAELAIQRNTGARGLRAILERTLMETMFHIPDMKNVHAVYVDEEVIFGQKQPVLIRDGITLEQYLAEKDEMH 574          
The following BLAST results are available for this feature:
BLAST of EWM28024.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110365|gb|EWM28024.1|0.000e+0100.00atp-dependent clp protease atp-binding subunit [Na... [more]
gi|970654597|gb|KUF92890.1|3.019e-16054.03ATP-dependent Clp protease ATP-binding subunit Clp... [more]
gi|568042950|gb|ETM40261.1|4.312e-15753.80ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|1214697327|gb|OWZ10628.1|8.766e-15751.75ATP-dependent Clp protease [Phytophthora megakarya... [more]
gi|675201991|ref|XP_008909880.1|9.066e-15753.80ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|566017367|gb|ETI40278.1|1.061e-15653.80ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|695391535|ref|XP_009520055.1|1.599e-15654.06hypothetical protein PHYSODRAFT_554819 [Phytophtho... [more]
gi|301118793|ref|XP_002907124.1|4.121e-15553.89ATP-dependent Clp protease ATP-binding subunit clp... [more]
gi|673043911|ref|XP_008875916.1|1.111e-15450.00ATP-dependent Clp protease, ATP-binding subunit Cl... [more]
gi|1173940999|gb|OQR90264.1|8.064e-15452.52ATP-dependent Clp protease ATP-binding subunit clp... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2662rna2662Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications