EWM28070.1, cds2628 (CDS) Nannochloropsis gaditana

Overview
NameEWM28070.1
Unique Namecds2628
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:858085..858570 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28070.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100044g2.1084.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:858085..858570 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|585110412|gb|EWM28070.1| (hypothetical protein Naga_100044g2 [Nannochloropsis gaditana])

HSP 1 Score: 328.176 bits (840), Expect = 1.029e-113
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query:    1 MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ 161
            MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ
Sbjct:    1 MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ 161          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|298712897|emb|CBJ33412.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 91.2781 bits (225), Expect = 2.217e-19
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0
Query:   82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCG-GEREHPGCTHDHHRSFDDPP----GPWQS 158
            T TCR C +QFNP +N   +C++HPG+++GRL RI+D D SG  ++FWSCCG  +  HPGC    H S+DDPP    G W+S
Sbjct:  182 TSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGL-EYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRS 262          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|873220225|emb|CEM36176.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 82.0333 bits (201), Expect = 1.639e-15
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query:   72 RDLTTPDQEGT---KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFD--DPPGPWQS 158
            R  + PD+ G     TCR C + F P  N   AC +H G+++GRL R++D D S   +FFWSCCG  +REHPGC    H SFD  D    W+S
Sbjct:  249 RHNSLPDESGLSRPATCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVDTSDL-EFFWSCCGEYDREHPGCVVTRHMSFDEADDATTWRS 340          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|1189394134|gb|OSX81019.1| (hypothetical protein BU14_0027s0046 [Porphyra umbilicalis])

HSP 1 Score: 66.6254 bits (161), Expect = 6.543e-11
Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0
Query:   83 KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFDD 151
            K CR C +Q++P  N P +C +H   Y GRL RI+ T+ SG  ++FW CCG  +    GC    H S+DD
Sbjct:   87 KVCRQCKQQYDPEANEPGSCRYHGAQYRGRLNRIEPTETSGL-EYFWHCCGDTDVNAEGCVKARHSSYDD 155          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|1035965029|gb|OAY85352.1| (hypothetical protein ACMD2_15488 [Ananas comosus])

HSP 1 Score: 56.6102 bits (135), Expect = 1.033e-7
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 0
Query:   83 KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTD----------PSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
            K CR C ++F+PS+N PS+C+FHP  +  R  R DD            P  AK  F+ CCG E  + PGC+ D H S+DD
Sbjct:   16 KLCRRCKQRFDPSKNTPSSCSFHPSFFVCR--RHDDQKRYYELGPDDPPYAAK--FYDCCGAEDPDAPGCSTDFHASYDD 91          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|357115143|ref|XP_003559351.1| (PREDICTED: uncharacterized protein LOC100825655 [Brachypodium distachyon] >gi|721603997|ref|XP_010230372.1| PREDICTED: uncharacterized protein LOC100825655 [Brachypodium distachyon] >gi|944076648|gb|KQK12000.1| hypothetical protein BRADI_1g00910 [Brachypodium distachyon] >gi|944076649|gb|KQK12001.1| hypothetical protein BRADI_1g00910 [Brachypodium distachyon])

HSP 1 Score: 55.8398 bits (133), Expect = 2.286e-7
Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 0
Query:   83 KTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
            K CR C   F+P EN P +C FHP  +         R   + D DP  A   F+ CCG E  + PGC  D HRS+DD
Sbjct:   20 KVCRRCKGTFSPLENTPLSCRFHPSFFVCRRHDDQKRYYELKDGDPPYAAK-FYDCCGAEDPDAPGCATDLHRSYDD 95          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|195615438|gb|ACG29549.1| (hypothetical protein [Zea mays] >gi|1142697565|gb|AQK61489.1| putative carbohydrate esterase [Zea mays] >gi|1142697567|gb|AQK61491.1| putative carbohydrate esterase [Zea mays])

HSP 1 Score: 55.4546 bits (132), Expect = 3.213e-7
Identity = 37/101 (36.63%), Postives = 49/101 (48.51%), Query Frame = 0
Query:   59 LASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
            + S +P+  PA P+          KTCR C   ++PS N   +C FHP  +         R   + D DP  A  F + CCG E  + PGCT D HRS+DD
Sbjct:    1 MDSGVPASAPAPPK---------HKTCRKCKASYDPSANTRLSCRFHPSFFVCRRHDDQKRYYELRDGDPPYAAKF-YDCCGAEDPDAPGCTTDLHRSYDD 91          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|676378217|ref|XP_009032387.1| (hypothetical protein AURANDRAFT_60770 [Aureococcus anophagefferens] >gi|323456873|gb|EGB12739.1| hypothetical protein AURANDRAFT_60770 [Aureococcus anophagefferens])

HSP 1 Score: 58.151 bits (139), Expect = 5.057e-7
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0
Query:   82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTD------PSGAKD-----FFWSCCGGEREHPGCTHDHHRSFDDP 152
            T+TCR C ++++ + N   +C +HPG   G  AR  D D      P+ + D     + +SCCG     PGCT+D  RS+DDP
Sbjct:  332 TRTCRVCREKYSDATNGDRSCCYHPGSLRGESARKGDWDDAAQGRPTASGDGGELVWTYSCCGQADGAPGCTYDRCRSYDDP 413          
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|195618020|gb|ACG30840.1| (hypothetical protein [Zea mays])

HSP 1 Score: 54.6842 bits (130), Expect = 6.952e-7
Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 0
Query:   83 KTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
            KTCR C   ++PS N   +C FHP  +         R   + D DP  A  F + CCG E  + PGCT D HRS+DD
Sbjct:   22 KTCRKCKASYDPSANTRLSCRFHPSFFVCRRHDDQKRYYELRDGDPPYAAKF-YDCCGAEDPDAPGCTTDLHRSYDD 97          
The following BLAST results are available for this feature:
BLAST of EWM28070.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585110412|gb|EWM28070.1|1.029e-113100.00hypothetical protein Naga_100044g2 [Nannochloropsi... [more]
gi|298712897|emb|CBJ33412.1|2.217e-1951.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|873220225|emb|CEM36176.1|1.639e-1545.16unnamed protein product [Vitrella brassicaformis C... [more]
gi|1189394134|gb|OSX81019.1|6.543e-1142.86hypothetical protein BU14_0027s0046 [Porphyra umbi... [more]
gi|1035965029|gb|OAY85352.1|1.033e-742.50hypothetical protein ACMD2_15488 [Ananas comosus][more]
gi|357115143|ref|XP_003559351.1|2.286e-741.56PREDICTED: uncharacterized protein LOC100825655 [B... [more]
gi|195615438|gb|ACG29549.1|3.213e-736.63hypothetical protein [Zea mays] >gi|1142697565|gb|... [more]
gi|676378217|ref|XP_009032387.1|5.057e-737.80hypothetical protein AURANDRAFT_60770 [Aureococcus... [more]
gi|195618020|gb|ACG30840.1|6.952e-741.56hypothetical protein [Zea mays][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2636rna2636Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications