EWM28070.1, cds2628 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|585110412|gb|EWM28070.1| (hypothetical protein Naga_100044g2 [Nannochloropsis gaditana]) HSP 1 Score: 328.176 bits (840), Expect = 1.029e-113 Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0
Query: 1 MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ 161
MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ
Sbjct: 1 MTRQCLRLFSLLVLLPSVASFIPHSSSYCLSVMHSSMVCRAESGSQHLSGGPSGALSPLASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGGEREHPGCTHDHHRSFDDPPGPWQSGFQ 161
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|298712897|emb|CBJ33412.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 91.2781 bits (225), Expect = 2.217e-19 Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 0
Query: 82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCG-GEREHPGCTHDHHRSFDDPP----GPWQS 158
T TCR C +QFNP +N +C++HPG+++GRL RI+D D SG ++FWSCCG + HPGC H S+DDPP G W+S
Sbjct: 182 TSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGL-EYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRS 262
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|873220225|emb|CEM36176.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 82.0333 bits (201), Expect = 1.639e-15 Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 0
Query: 72 RDLTTPDQEGT---KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFD--DPPGPWQS 158
R + PD+ G TCR C + F P N AC +H G+++GRL R++D D S +FFWSCCG +REHPGC H SFD D W+S
Sbjct: 249 RHNSLPDESGLSRPATCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVDTSDL-EFFWSCCGEYDREHPGCVVTRHMSFDEADDATTWRS 340
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|1189394134|gb|OSX81019.1| (hypothetical protein BU14_0027s0046 [Porphyra umbilicalis]) HSP 1 Score: 66.6254 bits (161), Expect = 6.543e-11 Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 0
Query: 83 KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFDD 151
K CR C +Q++P N P +C +H Y GRL RI+ T+ SG ++FW CCG + GC H S+DD
Sbjct: 87 KVCRQCKQQYDPEANEPGSCRYHGAQYRGRLNRIEPTETSGL-EYFWHCCGDTDVNAEGCVKARHSSYDD 155
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|1035965029|gb|OAY85352.1| (hypothetical protein ACMD2_15488 [Ananas comosus]) HSP 1 Score: 56.6102 bits (135), Expect = 1.033e-7 Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 0
Query: 83 KTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTD----------PSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
K CR C ++F+PS+N PS+C+FHP + R R DD P AK F+ CCG E + PGC+ D H S+DD
Sbjct: 16 KLCRRCKQRFDPSKNTPSSCSFHPSFFVCR--RHDDQKRYYELGPDDPPYAAK--FYDCCGAEDPDAPGCSTDFHASYDD 91
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|357115143|ref|XP_003559351.1| (PREDICTED: uncharacterized protein LOC100825655 [Brachypodium distachyon] >gi|721603997|ref|XP_010230372.1| PREDICTED: uncharacterized protein LOC100825655 [Brachypodium distachyon] >gi|944076648|gb|KQK12000.1| hypothetical protein BRADI_1g00910 [Brachypodium distachyon] >gi|944076649|gb|KQK12001.1| hypothetical protein BRADI_1g00910 [Brachypodium distachyon]) HSP 1 Score: 55.8398 bits (133), Expect = 2.286e-7 Identity = 32/77 (41.56%), Postives = 39/77 (50.65%), Query Frame = 0
Query: 83 KTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
K CR C F+P EN P +C FHP + R + D DP A F+ CCG E + PGC D HRS+DD
Sbjct: 20 KVCRRCKGTFSPLENTPLSCRFHPSFFVCRRHDDQKRYYELKDGDPPYAAK-FYDCCGAEDPDAPGCATDLHRSYDD 95
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|195615438|gb|ACG29549.1| (hypothetical protein [Zea mays] >gi|1142697565|gb|AQK61489.1| putative carbohydrate esterase [Zea mays] >gi|1142697567|gb|AQK61491.1| putative carbohydrate esterase [Zea mays]) HSP 1 Score: 55.4546 bits (132), Expect = 3.213e-7 Identity = 37/101 (36.63%), Postives = 49/101 (48.51%), Query Frame = 0
Query: 59 LASDLPSPPPASPRDLTTPDQEGTKTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
+ S +P+ PA P+ KTCR C ++PS N +C FHP + R + D DP A F + CCG E + PGCT D HRS+DD
Sbjct: 1 MDSGVPASAPAPPK---------HKTCRKCKASYDPSANTRLSCRFHPSFFVCRRHDDQKRYYELRDGDPPYAAKF-YDCCGAEDPDAPGCTTDLHRSYDD 91
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|676378217|ref|XP_009032387.1| (hypothetical protein AURANDRAFT_60770 [Aureococcus anophagefferens] >gi|323456873|gb|EGB12739.1| hypothetical protein AURANDRAFT_60770 [Aureococcus anophagefferens]) HSP 1 Score: 58.151 bits (139), Expect = 5.057e-7 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 0
Query: 82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTD------PSGAKD-----FFWSCCGGEREHPGCTHDHHRSFDDP 152
T+TCR C ++++ + N +C +HPG G AR D D P+ + D + +SCCG PGCT+D RS+DDP
Sbjct: 332 TRTCRVCREKYSDATNGDRSCCYHPGSLRGESARKGDWDDAAQGRPTASGDGGELVWTYSCCGQADGAPGCTYDRCRSYDDP 413
BLAST of EWM28070.1 vs. NCBI_GenBank
Match: gi|195618020|gb|ACG30840.1| (hypothetical protein [Zea mays]) HSP 1 Score: 54.6842 bits (130), Expect = 6.952e-7 Identity = 32/77 (41.56%), Postives = 40/77 (51.95%), Query Frame = 0
Query: 83 KTCRACLKQFNPSENPPSACTFHPGIYT-------GRLARIDDTDPSGAKDFFWSCCGGER-EHPGCTHDHHRSFDD 151
KTCR C ++PS N +C FHP + R + D DP A F + CCG E + PGCT D HRS+DD
Sbjct: 22 KTCRKCKASYDPSANTRLSCRFHPSFFVCRRHDDQKRYYELRDGDPPYAAKF-YDCCGAEDPDAPGCTTDLHRSYDD 97 The following BLAST results are available for this feature:
BLAST of EWM28070.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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