EWM28052.1, cds2620 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|585110394|gb|EWM28052.1| (enhancer of rudimentary [Nannochloropsis gaditana]) HSP 1 Score: 220.705 bits (561), Expect = 5.962e-73 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
Query: 1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR
Sbjct: 1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|570979374|gb|ETP40320.1| (hypothetical protein F442_12307, partial [Phytophthora parasitica P10297]) HSP 1 Score: 122.094 bits (305), Expect = 4.800e-34 Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
++HTI+LVQ TR +SRT+ DF +V MD VVKMYE +LKQLNP++ +ITYDI L ++D L DLSALV D TK Y P KEW+K K+++ LK QAG
Sbjct: 6 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 105
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|566019595|gb|ETI42506.1| (hypothetical protein F443_12384 [Phytophthora parasitica P1569] >gi|568014969|gb|ETL89146.1| hypothetical protein L917_11872 [Phytophthora parasitica] >gi|970641136|gb|KUF83399.1| Enhancer of rudimentary [Phytophthora nicotianae]) HSP 1 Score: 122.094 bits (305), Expect = 5.206e-34 Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
++HTI+LVQ TR +SRT+ DF +V MD VVKMYE +LKQLNP++ +ITYDI L ++D L DLSALV D TK Y P KEW+K K+++ LK QAG
Sbjct: 8 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 107
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|675199659|ref|XP_008908714.1| (hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >gi|567956915|gb|ETK82528.1| hypothetical protein L915_12106 [Phytophthora parasitica] >gi|567985573|gb|ETL35912.1| hypothetical protein L916_12031 [Phytophthora parasitica] >gi|568045248|gb|ETM42404.1| hypothetical protein L914_11942 [Phytophthora parasitica] >gi|568091388|gb|ETN06212.1| hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >gi|570323172|gb|ETO71120.1| hypothetical protein F444_12484 [Phytophthora parasitica P1976] >gi|570946957|gb|ETP12214.1| hypothetical protein F441_12370 [Phytophthora parasitica CJ01A1] >gi|570979408|gb|ETP40351.1| hypothetical protein F442_12305 [Phytophthora parasitica P10297]) HSP 1 Score: 122.094 bits (305), Expect = 5.223e-34 Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
++HTI+LVQ TR +SRT+ DF +V MD VVKMYE +LKQLNP++ +ITYDI L ++D L DLSALV D TK Y P KEW+K K+++ LK QAG
Sbjct: 7 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|375267458|emb|CCD28179.1| (enhancer of rudimentary, partial [Plasmopara viticola]) HSP 1 Score: 122.094 bits (305), Expect = 5.964e-34 Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
++HTI+LVQ TR +SRT+ DF +V MD VVKMYE +LKQLNP++ +ITYDI L ++D L DLSALV D TK Y P KEW+K K+++ LK QAG
Sbjct: 10 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 109
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|695431347|ref|XP_009530661.1| (hypothetical protein PHYSODRAFT_286574 [Phytophthora sojae] >gi|348673413|gb|EGZ13232.1| hypothetical protein PHYSODRAFT_286574 [Phytophthora sojae]) HSP 1 Score: 121.324 bits (303), Expect = 1.227e-33 Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
++HTI+LVQ TR +SRT+ DF +V MD VVKMYE +LKQLNP++ +ITYDI L ++D L DL+ALV D TK Y P KEW+K K+++ LK QAG
Sbjct: 7 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLTALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|340372121|ref|XP_003384593.1| (PREDICTED: enhancer of rudimentary homolog [Amphimedon queenslandica]) HSP 1 Score: 120.553 bits (301), Expect = 2.670e-33 Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 0
Query: 5 HTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
HTILL+QPTRA +RT+ D+ T+ E ++ + K+YE+ L+QL+P P ITYDI+ L +F+D+L DLS LV + YSPH+KEW+K KIY LK+QAG R
Sbjct: 3 HTILLIQPTRAHENRTYTDYETLDECLEGICKIYEEHLRQLHPQSPSITYDISELFKFIDNLHDLSCLVHQSSSGTYSPHNKEWLKEKIYGMLKKQAGPSR 103
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|560920561|ref|XP_006186493.1| (PREDICTED: enhancer of rudimentary homolog [Camelus ferus]) HSP 1 Score: 119.398 bits (298), Expect = 6.454e-33 Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 0
Query: 5 HTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
HTILLVQPT+ RT+ D+ +V E M+ V KMYE+ LK++NP+ P ITYDI+ L F+DDL DLS LV+ T+ Y P++K+W+K KIY L+QQA R
Sbjct: 3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRQQAQQAR 103
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|702507293|ref|XP_010039932.1| (PREDICTED: enhancer of rudimentary homolog [Eucalyptus grandis]) HSP 1 Score: 118.242 bits (295), Expect = 1.922e-32 Identity = 51/101 (50.50%), Postives = 78/101 (77.23%), Query Frame = 0
Query: 1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 101
MA+RHTI+L+Q ++ +SRTF D+ +V +AMD + +YE++LK+LNP+I +ITYDIT L F+D L DLSALV+D T+ Y P+ +EW+K + +++LK+ A
Sbjct: 1 MANRHTIILMQTSQNRASRTFMDYGSVSQAMDGICGLYERKLKELNPAIRNITYDITDLYNFMDGLTDLSALVYDHSTQAYLPYDREWIKQRTFQHLKKMA 101
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|313231453|emb|CBY08567.1| (unnamed protein product [Oikopleura dioica]) HSP 1 Score: 117.857 bits (294), Expect = 2.137e-32 Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0
Query: 3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
S HTILLVQPTR RT+ D+ +V + M+ V K+YE+ LK+LNPS P ITYDI+ L F+D+L DLS LV+ T+ Y P++K+WVK KIY L+ QAG
Sbjct: 2 SSHTILLVQPTRKPEGRTYSDYESVNDCMEGVCKIYEEHLKRLNPSSPQITYDISQLFDFIDELSDLSCLVYQKGTQTYLPYNKDWVKEKIYILLRNQAG 101 The following BLAST results are available for this feature:
BLAST of EWM28052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|