EWM28052.1, cds2620 (CDS) Nannochloropsis gaditana

Overview
NameEWM28052.1
Unique Namecds2620
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:833661..833757 -
Alignment locationCM002459.1:833324..833397 -
Alignment locationCM002459.1:833134..833180 -
Alignment locationCM002459.1:832572..832671 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28052.1
Productenhancer of rudimentary
Orig transcript idgnl|cribi|Naga_100044g9.1066.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:833661..833757 -
CM002459.1supercontigCM002459.1:833324..833397 -
CM002459.1supercontigCM002459.1:833134..833180 -
CM002459.1supercontigCM002459.1:832572..832671 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0007165signal transduction
GO:0007049cell cycle
GO:0006221pyrimidine nucleotide biosynthetic process
GO:0045747positive regulation of Notch signaling pathway
Vocabulary: INTERPRO
TermDefinition
IPR000781Enh_rudimentary
Homology
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|585110394|gb|EWM28052.1| (enhancer of rudimentary [Nannochloropsis gaditana])

HSP 1 Score: 220.705 bits (561), Expect = 5.962e-73
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
Query:    1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
            MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR
Sbjct:    1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|570979374|gb|ETP40320.1| (hypothetical protein F442_12307, partial [Phytophthora parasitica P10297])

HSP 1 Score: 122.094 bits (305), Expect = 4.800e-34
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            ++HTI+LVQ TR  +SRT+ DF +V   MD VVKMYE +LKQLNP++ +ITYDI  L  ++D L DLSALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    6 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 105          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|566019595|gb|ETI42506.1| (hypothetical protein F443_12384 [Phytophthora parasitica P1569] >gi|568014969|gb|ETL89146.1| hypothetical protein L917_11872 [Phytophthora parasitica] >gi|970641136|gb|KUF83399.1| Enhancer of rudimentary [Phytophthora nicotianae])

HSP 1 Score: 122.094 bits (305), Expect = 5.206e-34
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            ++HTI+LVQ TR  +SRT+ DF +V   MD VVKMYE +LKQLNP++ +ITYDI  L  ++D L DLSALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    8 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 107          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|675199659|ref|XP_008908714.1| (hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >gi|567956915|gb|ETK82528.1| hypothetical protein L915_12106 [Phytophthora parasitica] >gi|567985573|gb|ETL35912.1| hypothetical protein L916_12031 [Phytophthora parasitica] >gi|568045248|gb|ETM42404.1| hypothetical protein L914_11942 [Phytophthora parasitica] >gi|568091388|gb|ETN06212.1| hypothetical protein PPTG_13978 [Phytophthora parasitica INRA-310] >gi|570323172|gb|ETO71120.1| hypothetical protein F444_12484 [Phytophthora parasitica P1976] >gi|570946957|gb|ETP12214.1| hypothetical protein F441_12370 [Phytophthora parasitica CJ01A1] >gi|570979408|gb|ETP40351.1| hypothetical protein F442_12305 [Phytophthora parasitica P10297])

HSP 1 Score: 122.094 bits (305), Expect = 5.223e-34
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            ++HTI+LVQ TR  +SRT+ DF +V   MD VVKMYE +LKQLNP++ +ITYDI  L  ++D L DLSALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    7 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|375267458|emb|CCD28179.1| (enhancer of rudimentary, partial [Plasmopara viticola])

HSP 1 Score: 122.094 bits (305), Expect = 5.964e-34
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            ++HTI+LVQ TR  +SRT+ DF +V   MD VVKMYE +LKQLNP++ +ITYDI  L  ++D L DLSALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:   10 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 109          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|695431347|ref|XP_009530661.1| (hypothetical protein PHYSODRAFT_286574 [Phytophthora sojae] >gi|348673413|gb|EGZ13232.1| hypothetical protein PHYSODRAFT_286574 [Phytophthora sojae])

HSP 1 Score: 121.324 bits (303), Expect = 1.227e-33
Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            ++HTI+LVQ TR  +SRT+ DF +V   MD VVKMYE +LKQLNP++ +ITYDI  L  ++D L DL+ALV D  TK Y P  KEW+K K+++ LK QAG
Sbjct:    7 AKHTIILVQYTRDPNSRTYLDFESVNGGMDGVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLTALVLDLETKTYLPCGKEWIKKKVFQVLKNQAG 106          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|340372121|ref|XP_003384593.1| (PREDICTED: enhancer of rudimentary homolog [Amphimedon queenslandica])

HSP 1 Score: 120.553 bits (301), Expect = 2.670e-33
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = 0
Query:    5 HTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
            HTILL+QPTRA  +RT+ D+ T+ E ++ + K+YE+ L+QL+P  P ITYDI+ L +F+D+L DLS LV    +  YSPH+KEW+K KIY  LK+QAG  R
Sbjct:    3 HTILLIQPTRAHENRTYTDYETLDECLEGICKIYEEHLRQLHPQSPSITYDISELFKFIDNLHDLSCLVHQSSSGTYSPHNKEWLKEKIYGMLKKQAGPSR 103          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|560920561|ref|XP_006186493.1| (PREDICTED: enhancer of rudimentary homolog [Camelus ferus])

HSP 1 Score: 119.398 bits (298), Expect = 6.454e-33
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 0
Query:    5 HTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAGGGR 105
            HTILLVQPT+    RT+ D+ +V E M+ V KMYE+ LK++NP+ P ITYDI+ L  F+DDL DLS LV+   T+ Y P++K+W+K KIY  L+QQA   R
Sbjct:    3 HTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRQQAQQAR 103          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|702507293|ref|XP_010039932.1| (PREDICTED: enhancer of rudimentary homolog [Eucalyptus grandis])

HSP 1 Score: 118.242 bits (295), Expect = 1.922e-32
Identity = 51/101 (50.50%), Postives = 78/101 (77.23%), Query Frame = 0
Query:    1 MASRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 101
            MA+RHTI+L+Q ++  +SRTF D+ +V +AMD +  +YE++LK+LNP+I +ITYDIT L  F+D L DLSALV+D  T+ Y P+ +EW+K + +++LK+ A
Sbjct:    1 MANRHTIILMQTSQNRASRTFMDYGSVSQAMDGICGLYERKLKELNPAIRNITYDITDLYNFMDGLTDLSALVYDHSTQAYLPYDREWIKQRTFQHLKKMA 101          
BLAST of EWM28052.1 vs. NCBI_GenBank
Match: gi|313231453|emb|CBY08567.1| (unnamed protein product [Oikopleura dioica])

HSP 1 Score: 117.857 bits (294), Expect = 2.137e-32
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0
Query:    3 SRHTILLVQPTRAASSRTFFDFPTVYEAMDEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQAG 102
            S HTILLVQPTR    RT+ D+ +V + M+ V K+YE+ LK+LNPS P ITYDI+ L  F+D+L DLS LV+   T+ Y P++K+WVK KIY  L+ QAG
Sbjct:    2 SSHTILLVQPTRKPEGRTYSDYESVNDCMEGVCKIYEEHLKRLNPSSPQITYDISQLFDFIDELSDLSCLVYQKGTQTYLPYNKDWVKEKIYILLRNQAG 101          
The following BLAST results are available for this feature:
BLAST of EWM28052.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110394|gb|EWM28052.1|5.962e-73100.00enhancer of rudimentary [Nannochloropsis gaditana][more]
gi|570979374|gb|ETP40320.1|4.800e-3457.00hypothetical protein F442_12307, partial [Phytopht... [more]
gi|566019595|gb|ETI42506.1|5.206e-3457.00hypothetical protein F443_12384 [Phytophthora para... [more]
gi|675199659|ref|XP_008908714.1|5.223e-3457.00hypothetical protein PPTG_13978 [Phytophthora para... [more]
gi|375267458|emb|CCD28179.1|5.964e-3457.00enhancer of rudimentary, partial [Plasmopara vitic... [more]
gi|695431347|ref|XP_009530661.1|1.227e-3356.00hypothetical protein PHYSODRAFT_286574 [Phytophtho... [more]
gi|340372121|ref|XP_003384593.1|2.670e-3353.47PREDICTED: enhancer of rudimentary homolog [Amphim... [more]
gi|560920561|ref|XP_006186493.1|6.454e-3353.47PREDICTED: enhancer of rudimentary homolog [Camelu... [more]
gi|702507293|ref|XP_010039932.1|1.922e-3250.50PREDICTED: enhancer of rudimentary homolog [Eucaly... [more]
gi|313231453|emb|CBY08567.1|2.137e-3255.00unnamed protein product [Oikopleura dioica][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2628rna2628Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications