EWM28057.1, cds2616 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28057.1
Unique Name	cds2616
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:825554..825575 -
Alignment location	CM002459.1:823267..825290 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28057.1
Product	Prefoldin
Orig transcript id	gnl\|cribi\|Naga_100044g14.1071.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:825554..825575 -
CM002459.1	supercontig	CM002459.1:823267..825290 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **INTERPRO**
Term	Definition
IPR001322	Lamin_tail_dom

Homology

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BLAST of EWM28057.1 vs. NCBI_GenBank
Match: gi|585110399|gb|EWM28057.1| (Prefoldin [Nannochloropsis gaditana])

HSP 1 Score: 1366.67 bits (3536), Expect = 0.000e+0
Identity = 681/681 (100.00%), Postives = 681/681 (100.00%), Query Frame = 0

Query:    1 MVRTRKSDAAPGTPAIGKDKQNKSRGDDMYKQVEEYVMRVKDLEITNKQLREELRRSGGDDTVGKGIRCSTRMSSPNCVKKMRDLRQHIQTLESKIKEARRENQQLREQFNESFEDAREKFRSQGRIHGNLMAAKKADEFSGQILYLKDSVHRLEKTVKELEAERRRLQQEVKEVDELRNDLKRAEERHAMLERNVENLQDENENLERELEHQEGRHSLGVVVEEEKPGVPELEAEIRTLKEQVEGLTEDLRTRMSAAEETESLKDEVEELRASLKAATSADRERREARDSIVTQLEVCREQARKEKDRCQELQKRAEALVEAQKAAEEKARRLEDSPSRTIVKARATALESTVKSLEGELSLLRRERNKNLGDVDALQEDKEALEDEVRRLALQIEQQRRQAEAVLARETESLERKIDRLQEELDTANAKSVAAVEASASAVARALQEVGPASAARRQGRGTSLGGTEEGSEQRLLVEENARLRREVDVYRELAGSQHDQISLVYIQEVNAQADYLVVENRTNLDVSLAGWALGTSLSESEIQFEFPEELMLSSRASLKVWWGARNISYKSRPTRGNLFWEESDRIDIFQAQNDEVLLMDAEGCEMSRMRIVSDKRRARAGPFVGTPTPDSKRFRSSPWSGGGSGMRDNFGVRTSILDEDQGESDMFMMAVEGSFNEEEG 681
            MVRTRKSDAAPGTPAIGKDKQNKSRGDDMYKQVEEYVMRVKDLEITNKQLREELRRSGGDDTVGKGIRCSTRMSSPNCVKKMRDLRQHIQTLESKIKEARRENQQLREQFNESFEDAREKFRSQGRIHGNLMAAKKADEFSGQILYLKDSVHRLEKTVKELEAERRRLQQEVKEVDELRNDLKRAEERHAMLERNVENLQDENENLERELEHQEGRHSLGVVVEEEKPGVPELEAEIRTLKEQVEGLTEDLRTRMSAAEETESLKDEVEELRASLKAATSADRERREARDSIVTQLEVCREQARKEKDRCQELQKRAEALVEAQKAAEEKARRLEDSPSRTIVKARATALESTVKSLEGELSLLRRERNKNLGDVDALQEDKEALEDEVRRLALQIEQQRRQAEAVLARETESLERKIDRLQEELDTANAKSVAAVEASASAVARALQEVGPASAARRQGRGTSLGGTEEGSEQRLLVEENARLRREVDVYRELAGSQHDQISLVYIQEVNAQADYLVVENRTNLDVSLAGWALGTSLSESEIQFEFPEELMLSSRASLKVWWGARNISYKSRPTRGNLFWEESDRIDIFQAQNDEVLLMDAEGCEMSRMRIVSDKRRARAGPFVGTPTPDSKRFRSSPWSGGGSGMRDNFGVRTSILDEDQGESDMFMMAVEGSFNEEEG
Sbjct:    1 MVRTRKSDAAPGTPAIGKDKQNKSRGDDMYKQVEEYVMRVKDLEITNKQLREELRRSGGDDTVGKGIRCSTRMSSPNCVKKMRDLRQHIQTLESKIKEARRENQQLREQFNESFEDAREKFRSQGRIHGNLMAAKKADEFSGQILYLKDSVHRLEKTVKELEAERRRLQQEVKEVDELRNDLKRAEERHAMLERNVENLQDENENLERELEHQEGRHSLGVVVEEEKPGVPELEAEIRTLKEQVEGLTEDLRTRMSAAEETESLKDEVEELRASLKAATSADRERREARDSIVTQLEVCREQARKEKDRCQELQKRAEALVEAQKAAEEKARRLEDSPSRTIVKARATALESTVKSLEGELSLLRRERNKNLGDVDALQEDKEALEDEVRRLALQIEQQRRQAEAVLARETESLERKIDRLQEELDTANAKSVAAVEASASAVARALQEVGPASAARRQGRGTSLGGTEEGSEQRLLVEENARLRREVDVYRELAGSQHDQISLVYIQEVNAQADYLVVENRTNLDVSLAGWALGTSLSESEIQFEFPEELMLSSRASLKVWWGARNISYKSRPTRGNLFWEESDRIDIFQAQNDEVLLMDAEGCEMSRMRIVSDKRRARAGPFVGTPTPDSKRFRSSPWSGGGSGMRDNFGVRTSILDEDQGESDMFMMAVEGSFNEEEG 681

The following BLAST results are available for this feature:

BLAST of EWM28057.1 vs. NCBI_GenBank

BLAST of EWM28057.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110399\|gb\|EWM28057.1\|	0.000e+0	100.00	Prefoldin [Nannochloropsis gaditana]	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2624	rna2624	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications