EWM28077.1, cds2604 (CDS) Nannochloropsis gaditana

Overview
NameEWM28077.1
Unique Namecds2604
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:794312..794745 -
Alignment locationCM002459.1:793977..794055 -
Alignment locationCM002459.1:793185..793796 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28077.1
ProductZinc finger, RING-type
Orig transcript idgnl|cribi|Naga_100044g27.1091.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:794312..794745 -
CM002459.1supercontigCM002459.1:793977..794055 -
CM002459.1supercontigCM002459.1:793185..793796 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|585110419|gb|EWM28077.1| (Zinc finger, RING-type [Nannochloropsis gaditana])

HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query:    1 MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL 374
            MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL
Sbjct:    1 MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL 374          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1210525565|dbj|GAX15634.1| (E3 ubiquitin-protein ligase RNF13 [Fistulifera solaris])

HSP 1 Score: 78.1814 bits (191), Expect = 3.528e-12
Identity = 63/221 (28.51%), Postives = 90/221 (40.72%), Query Frame = 0
Query:  171 HMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDD-----EEAIFVFGEGEAAFEGEERWEDD-------------EAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLM-QDAQHR 372
             MDI R  R  +RH+    +++LPT  Y+    R    R+  E       D  D     EE  ++  + E  +  +E    D             +   +  +CVICLE F   DR+R LP C H  H  C+D WL G+ S++ C T  CPTCK               A  +  +  E M                   +P WA+AR G++L  QD+ HR
Sbjct:  290 QMDIVRMARSASRHLDVESILRLPTITYQS---RLTATRIPEETSSDEEDDHSDSTGKPEEWSWMLVQ-EGGYGSKEVQHKDKRHRSRSNQKGLPDYAEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCKK-------------DACPDGDDSSESM-------------------VPSWAFARIGDALARQDSSHR 473          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|219115587|ref|XP_002178589.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410324|gb|EEC50254.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.7886 bits (177), Expect = 1.786e-10
Identity = 49/142 (34.51%), Postives = 63/142 (44.37%), Query Frame = 0
Query:  172 MDIARQERFKTRHVGPLELMQLPTTLYKELMV---RRRRERLQRE----MGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCK 306
            MDI R  R   RH+    + +LP   Y+   V           RE    M V    +E+ E   +      AA    +  E         +CVICLE F   D +R LP C H  H  C+D WL G++SYE C+T  CPTCK
Sbjct:  286 MDIVRMTRNAARHLDVDSIAKLPIMKYRSTKVASPTTAHASTVREGWSWMMVQGEANEEHEYQHYQSSLLSAAVTTSQPNETIVTSAHEDVCVICLECFDDGDSLRVLP-CNHSFHVGCIDRWLSGSSSYEDCYTSGCPTCK 426          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1210522109|dbj|GAX19162.1| (E3 ubiquitin-protein ligase RNF167 [Fistulifera solaris])

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-9
Identity = 57/213 (26.76%), Postives = 83/213 (38.97%), Query Frame = 0
Query:  171 HMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRR--RERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERH----------------LCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSL 365
             MDI R  R  +RH+    + +LPT  Y+  +   R   E    +           EE  ++  + E  +  +E    D+    R+                +CVICLE F   DR+R LP C H  H  C+D WL G+ S++ C T  CPTCK               A  +  +  E M                   +P WA+AR G++L
Sbjct:  195 QMDIVRMARSASRHLDVESIFRLPTITYQSRLTATRIPEETSSDDEDDHSDSTGKPEEWSWMLVQ-EGGYGSKEIQHKDKRHRSRNFPSYQKGLPDYTEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK-------------KDACPDGDDSSESM-------------------VPSWAFARIGDAL 373          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1149774545|ref|XP_020151094.1| (E3 ubiquitin-protein ligase ATL9-like [Aegilops tauschii subsp. tauschii] >gi|475490745|gb|EMT03516.1| RING-H2 finger protein ATL4O [Aegilops tauschii])

HSP 1 Score: 62.7734 bits (151), Expect = 4.293e-8
Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:  231 FGEGEAAFEGEERWEDDE---AGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVA 327
             G G AA  G   ++ ++   +GGE H C +CL    P + V++LPAC H+ H RC+D WL           R+CP C++P+  S     T P  AVEVA
Sbjct:   80 VGLGRAALAGLPVYKYEKLRCSGGEGHECAVCLAEIKPKEVVKQLPACTHLFHDRCIDEWLW--------SHRTCPVCRSPVDGS-----TVP--AVEVA 164          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1149803449|ref|XP_020161830.1| (RING-H2 finger protein ATL32-like [Aegilops tauschii subsp. tauschii] >gi|475527048|gb|EMT07396.1| RING-H2 finger protein ATL4O [Aegilops tauschii])

HSP 1 Score: 62.3882 bits (150), Expect = 5.847e-8
Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0
Query:  231 FGEGEAAFEGEERWEDDE---AGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAA 323
             G G AA  G   ++ ++    GG+ H C +CL    P + V++LPAC H+ H RC+D WL           R+CP C++P+   AS+ P    AA
Sbjct:   79 VGLGRAAIAGLPVYKYEKLRCGGGDSHECAVCLAEVRPKEVVKQLPACTHLFHDRCIDDWLWS--------HRTCPVCRSPV--VASTVPAVEVAA 164          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|970034984|ref|XP_015078822.1| (PREDICTED: RING-H2 finger protein ATL16-like [Solanum pennellii])

HSP 1 Score: 63.1586 bits (152), Expect = 1.400e-7
Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 0
Query:  167 MRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVF----GEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKM-GAKTDTVSSPRSILSNI 350
            +  H +D+ R+  F  R     + +  P+T+Y  ++  R              L+E   ++I +F    GEG+ A   E R    E       C +CL  F   +++R +P+C HI H  C+D+WL+  A        +CP C+T IS     T       +E+AE    + G +T+  S  R+++S++
Sbjct:   48 LNWHRIDLLRRFSFSRR-----QSVVEPSTVYSPVLENRG-------------LEESVIQSIPIFQYKKGEGKDAIIEERRRSSCE-------CAVCLNDFQHNEKLRIIPSCAHIFHIDCIDVWLQKNA--------TCPLCRTNISL----TKIPYDVVIEIAENNPTLSGDRTNGSSFSRNLISSM 199          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1072236824|gb|OEU21552.1| (hypothetical protein FRACYDRAFT_235176 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 63.5438 bits (153), Expect = 2.518e-7
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0
Query:  255 LCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCK 306
            +CVICL+ F   DR+R LP C H  H  C+D WL G+ SY  C T  CPTCK
Sbjct:  694 VCVICLDAFREGDRLRVLP-CDHSFHVGCIDRWLSGSHSYNECFTAGCPTCK 744          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|545368219|ref|XP_005648891.1| (hypothetical protein COCSUDRAFT_23409 [Coccomyxa subellipsoidea C-169] >gi|384250868|gb|EIE24347.1| hypothetical protein COCSUDRAFT_23409 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 58.151 bits (139), Expect = 6.609e-7
Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0
Query:  244 WEDDEA---GGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPIS 310
            W+D  A   G +   C ICLEGF   ++VRELP C H+ HQ C+D WLR           +CP C+T + 
Sbjct:   67 WQDGAATVTGRQVGECAICLEGFARGEKVRELPQCCHVFHQACVDRWLR--------MHNACPLCRTALG 128          
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1070998606|gb|OEL38450.1| (hypothetical protein BAE44_0000531 [Dichanthelium oligosanthes])

HSP 1 Score: 56.9954 bits (136), Expect = 6.697e-7
Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 0
Query:  230 VFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTT 319
            V G G +A      ++  + G E   C +CL    P ++V++LP C H+ H+ C+D+WLR          R+CP C+T +  +A + PTT
Sbjct:    9 VLGLGASAIASLPVYKYKKRGDE---CPVCLGEVKPKEKVKQLPVCTHLFHEGCIDVWLRS--------QRTCPVCRTLV--NAVAVPTT 85          
The following BLAST results are available for this feature:
BLAST of EWM28077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110419|gb|EWM28077.1|0.000e+0100.00Zinc finger, RING-type [Nannochloropsis gaditana][more]
gi|1210525565|dbj|GAX15634.1|3.528e-1228.51E3 ubiquitin-protein ligase RNF13 [Fistulifera sol... [more]
gi|219115587|ref|XP_002178589.1|1.786e-1034.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210522109|dbj|GAX19162.1|2.398e-926.76E3 ubiquitin-protein ligase RNF167 [Fistulifera so... [more]
gi|1149774545|ref|XP_020151094.1|4.293e-838.00E3 ubiquitin-protein ligase ATL9-like [Aegilops ta... [more]
gi|1149803449|ref|XP_020161830.1|5.847e-835.42RING-H2 finger protein ATL32-like [Aegilops tausch... [more]
gi|970034984|ref|XP_015078822.1|1.400e-726.46PREDICTED: RING-H2 finger protein ATL16-like [Sola... [more]
gi|1072236824|gb|OEU21552.1|2.518e-753.85hypothetical protein FRACYDRAFT_235176 [Fragilario... [more]
gi|545368219|ref|XP_005648891.1|6.609e-741.43hypothetical protein COCSUDRAFT_23409 [Coccomyxa s... [more]
gi|1070998606|gb|OEL38450.1|6.697e-733.33hypothetical protein BAE44_0000531 [Dichanthelium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2612rna2612Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications