EWM28077.1, cds2604 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|585110419|gb|EWM28077.1| (Zinc finger, RING-type [Nannochloropsis gaditana]) HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0 Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 0
Query: 1 MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL 374
MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL
Sbjct: 1 MASKCRYETCVQRGRFLCGLNRYSGRRKDDTWGCVPHPHRQAASFLMSSPLNILLGFSMIPLRFVILTPTYTFSYVATSCPLNMEEEEKWRRTHALNSSFRGGSSRLAPSHQNHHHHPFFHHHHASSPFSNSSVRLAAGSPHSCRAPFSSPPPSLHPPFSSSHGSSMRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLMQDAQHRQL 374
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1210525565|dbj|GAX15634.1| (E3 ubiquitin-protein ligase RNF13 [Fistulifera solaris]) HSP 1 Score: 78.1814 bits (191), Expect = 3.528e-12 Identity = 63/221 (28.51%), Postives = 90/221 (40.72%), Query Frame = 0
Query: 171 HMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDD-----EEAIFVFGEGEAAFEGEERWEDD-------------EAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSLM-QDAQHR 372
MDI R R +RH+ +++LPT Y+ R R+ E D D EE ++ + E + +E D + + +CVICLE F DR+R LP C H H C+D WL G+ S++ C T CPTCK A + + E M +P WA+AR G++L QD+ HR
Sbjct: 290 QMDIVRMARSASRHLDVESILRLPTITYQS---RLTATRIPEETSSDEEDDHSDSTGKPEEWSWMLVQ-EGGYGSKEVQHKDKRHRSRSNQKGLPDYAEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCKK-------------DACPDGDDSSESM-------------------VPSWAFARIGDALARQDSSHR 473
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|219115587|ref|XP_002178589.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410324|gb|EEC50254.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.7886 bits (177), Expect = 1.786e-10 Identity = 49/142 (34.51%), Postives = 63/142 (44.37%), Query Frame = 0
Query: 172 MDIARQERFKTRHVGPLELMQLPTTLYKELMV---RRRRERLQRE----MGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCK 306
MDI R R RH+ + +LP Y+ V RE M V +E+ E + AA + E +CVICLE F D +R LP C H H C+D WL G++SYE C+T CPTCK
Sbjct: 286 MDIVRMTRNAARHLDVDSIAKLPIMKYRSTKVASPTTAHASTVREGWSWMMVQGEANEEHEYQHYQSSLLSAAVTTSQPNETIVTSAHEDVCVICLECFDDGDSLRVLP-CNHSFHVGCIDRWLSGSSSYEDCYTSGCPTCK 426
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1210522109|dbj|GAX19162.1| (E3 ubiquitin-protein ligase RNF167 [Fistulifera solaris]) HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-9 Identity = 57/213 (26.76%), Postives = 83/213 (38.97%), Query Frame = 0
Query: 171 HMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRR--RERLQREMGVSVMLDEDDEEAIFVFGEGEAAFEGEERWEDDEAGGERH----------------LCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKMGAKTDTVSSPRSILSNIFEIPRWAYARAGNSL 365
MDI R R +RH+ + +LPT Y+ + R E + EE ++ + E + +E D+ R+ +CVICLE F DR+R LP C H H C+D WL G+ S++ C T CPTCK A + + E M +P WA+AR G++L
Sbjct: 195 QMDIVRMARSASRHLDVESIFRLPTITYQSRLTATRIPEETSSDDEDDHSDSTGKPEEWSWMLVQ-EGGYGSKEIQHKDKRHRSRNFPSYQKGLPDYTEDDDVCVICLEQFADGDRLRVLP-CSHSFHVGCIDQWLSGSHSFDDCFTTGCPTCK-------------KDACPDGDDSSESM-------------------VPSWAFARIGDAL 373
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1149774545|ref|XP_020151094.1| (E3 ubiquitin-protein ligase ATL9-like [Aegilops tauschii subsp. tauschii] >gi|475490745|gb|EMT03516.1| RING-H2 finger protein ATL4O [Aegilops tauschii]) HSP 1 Score: 62.7734 bits (151), Expect = 4.293e-8 Identity = 38/100 (38.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query: 231 FGEGEAAFEGEERWEDDE---AGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVA 327
G G AA G ++ ++ +GGE H C +CL P + V++LPAC H+ H RC+D WL R+CP C++P+ S T P AVEVA
Sbjct: 80 VGLGRAALAGLPVYKYEKLRCSGGEGHECAVCLAEIKPKEVVKQLPACTHLFHDRCIDEWLW--------SHRTCPVCRSPVDGS-----TVP--AVEVA 164
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1149803449|ref|XP_020161830.1| (RING-H2 finger protein ATL32-like [Aegilops tauschii subsp. tauschii] >gi|475527048|gb|EMT07396.1| RING-H2 finger protein ATL4O [Aegilops tauschii]) HSP 1 Score: 62.3882 bits (150), Expect = 5.847e-8 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 0
Query: 231 FGEGEAAFEGEERWEDDE---AGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAA 323
G G AA G ++ ++ GG+ H C +CL P + V++LPAC H+ H RC+D WL R+CP C++P+ AS+ P AA
Sbjct: 79 VGLGRAAIAGLPVYKYEKLRCGGGDSHECAVCLAEVRPKEVVKQLPACTHLFHDRCIDDWLWS--------HRTCPVCRSPV--VASTVPAVEVAA 164
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|970034984|ref|XP_015078822.1| (PREDICTED: RING-H2 finger protein ATL16-like [Solanum pennellii]) HSP 1 Score: 63.1586 bits (152), Expect = 1.400e-7 Identity = 50/189 (26.46%), Postives = 86/189 (45.50%), Query Frame = 0
Query: 167 MRGHHMDIARQERFKTRHVGPLELMQLPTTLYKELMVRRRRERLQREMGVSVMLDEDDEEAIFVF----GEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTTPSAAVEVAEEEEKM-GAKTDTVSSPRSILSNI 350
+ H +D+ R+ F R + + P+T+Y ++ R L+E ++I +F GEG+ A E R E C +CL F +++R +P+C HI H C+D+WL+ A +CP C+T IS T +E+AE + G +T+ S R+++S++
Sbjct: 48 LNWHRIDLLRRFSFSRR-----QSVVEPSTVYSPVLENRG-------------LEESVIQSIPIFQYKKGEGKDAIIEERRRSSCE-------CAVCLNDFQHNEKLRIIPSCAHIFHIDCIDVWLQKNA--------TCPLCRTNISL----TKIPYDVVIEIAENNPTLSGDRTNGSSFSRNLISSM 199
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1072236824|gb|OEU21552.1| (hypothetical protein FRACYDRAFT_235176 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 63.5438 bits (153), Expect = 2.518e-7 Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0
Query: 255 LCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCK 306
+CVICL+ F DR+R LP C H H C+D WL G+ SY C T CPTCK
Sbjct: 694 VCVICLDAFREGDRLRVLP-CDHSFHVGCIDRWLSGSHSYNECFTAGCPTCK 744
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|545368219|ref|XP_005648891.1| (hypothetical protein COCSUDRAFT_23409 [Coccomyxa subellipsoidea C-169] >gi|384250868|gb|EIE24347.1| hypothetical protein COCSUDRAFT_23409 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 58.151 bits (139), Expect = 6.609e-7 Identity = 29/70 (41.43%), Postives = 38/70 (54.29%), Query Frame = 0
Query: 244 WEDDEA---GGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPIS 310
W+D A G + C ICLEGF ++VRELP C H+ HQ C+D WLR +CP C+T +
Sbjct: 67 WQDGAATVTGRQVGECAICLEGFARGEKVRELPQCCHVFHQACVDRWLR--------MHNACPLCRTALG 128
BLAST of EWM28077.1 vs. NCBI_GenBank
Match: gi|1070998606|gb|OEL38450.1| (hypothetical protein BAE44_0000531 [Dichanthelium oligosanthes]) HSP 1 Score: 56.9954 bits (136), Expect = 6.697e-7 Identity = 30/90 (33.33%), Postives = 48/90 (53.33%), Query Frame = 0
Query: 230 VFGEGEAAFEGEERWEDDEAGGERHLCVICLEGFTPWDRVRELPACPHIHHQRCLDIWLRGAASYEACHTRSCPTCKTPISFSASSTPTT 319
V G G +A ++ + G E C +CL P ++V++LP C H+ H+ C+D+WLR R+CP C+T + +A + PTT
Sbjct: 9 VLGLGASAIASLPVYKYKKRGDE---CPVCLGEVKPKEKVKQLPVCTHLFHEGCIDVWLRS--------QRTCPVCRTLV--NAVAVPTT 85 The following BLAST results are available for this feature:
BLAST of EWM28077.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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