EWM30647.1, cds26 (CDS) Nannochloropsis gaditana

Overview
NameEWM30647.1
Unique Namecds26
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:84260..84862 +
Alignment locationCM002455.1:84980..85039 +
Alignment locationCM002455.1:85207..85317 +
Alignment locationCM002455.1:85489..85626 +
Alignment locationCM002455.1:85831..85953 +
Alignment locationCM002455.1:86226..86291 +
Alignment locationCM002455.1:86453..86629 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30647.1
Productder1-like domain member 2
Orig transcript idgnl|cribi|Naga_100786g2.2395.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:84260..84862 +
CM002455.1supercontigCM002455.1:84980..85039 +
CM002455.1supercontigCM002455.1:85207..85317 +
CM002455.1supercontigCM002455.1:85489..85626 +
CM002455.1supercontigCM002455.1:85831..85953 +
CM002455.1supercontigCM002455.1:86226..86291 +
CM002455.1supercontigCM002455.1:86453..86629 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR007599DER1
Homology
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|585113339|gb|EWM30647.1| (der1-like domain member 2 [Nannochloropsis gaditana])

HSP 1 Score: 879.782 bits (2272), Expect = 0.000e+0
Identity = 425/425 (100.00%), Postives = 425/425 (100.00%), Query Frame = 0
Query:    1 MRNIGNILMPFDEPLKSTFVPHMDTQLQTIPPSWSSAVGLVSLSINMRTNALRAAGYKHGDRRPKVFSSVLSLLFFASVATAVAHNLPVACRWMRGVTINREATKEILPFMSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDLH 425
            MRNIGNILMPFDEPLKSTFVPHMDTQLQTIPPSWSSAVGLVSLSINMRTNALRAAGYKHGDRRPKVFSSVLSLLFFASVATAVAHNLPVACRWMRGVTINREATKEILPFMSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDLH
Sbjct:    1 MRNIGNILMPFDEPLKSTFVPHMDTQLQTIPPSWSSAVGLVSLSINMRTNALRAAGYKHGDRRPKVFSSVLSLLFFASVATAVAHNLPVACRWMRGVTINREATKEILPFMSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDLH 425          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|553187251|ref|XP_005854572.1| (degradation in endoplasmic reticulum der1-like protein [Nannochloropsis gaditana CCMP526] >gi|422294488|gb|EKU21788.1| degradation in endoplasmic reticulum der1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 296.975 bits (759), Expect = 3.255e-97
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 0
Query:  111 MSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQI 259
            MSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQ+
Sbjct:    1 MSRREGVSLALCSLIRSRGGARAASAAKDKHRLHNDRANDNVVEEEKAENEEEEEEEEEEEEEEEEEEEEEDAEEDEDDYDEEGVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQV 149          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|676388651|ref|XP_009037604.1| (hypothetical protein AURANDRAFT_71775 [Aureococcus anophagefferens] >gi|323451730|gb|EGB07606.1| hypothetical protein AURANDRAFT_71775 [Aureococcus anophagefferens])

HSP 1 Score: 230.72 bits (587), Expect = 4.377e-69
Identity = 113/223 (50.67%), Postives = 155/223 (69.51%), Query Frame = 0
Query:  190 YDEE-GVTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQK 411
            +DE+  +++ DF+  +F S+  K +  TPP+T+AY+ ASL++T  + L   NQWPEWL L+W  V  R Q+WRP T+FL++G FG +YLL+ HF+WTYM  LEKL    P +F+ M+ FG   LL+G  L G + HFLGHNLSC+LVY+W+R +EGQ+V VM  F++ A +LPWFF AQT +LE ELP+ DLLGIA+GHLY  A  RK++  P  L+  F   
Sbjct:   82 FDEDVEISDADFDGDTFKSRTLKSWAETPPMTQAYVGASLALTCGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLLGVGLGGMKTHFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSN 304          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|1210527289|dbj|GAX13924.1| (hypothetical protein FisN_5Lh173 [Fistulifera solaris])

HSP 1 Score: 226.098 bits (575), Expect = 4.638e-67
Identity = 105/207 (50.72%), Postives = 142/207 (68.60%), Query Frame = 0
Query:  195 VTEEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP 401
            V E DF + +   ++ + ++RTPP+TKAYL AS   T    LFNKN++P  L L+W  V+ RLQIWRPFTSFL FG FG  Y+L+A F+WTYMA LE+L    P DF  ++LFG   +++G PL+   P FLGHNLS YLVY+WSR  EG +V++  +F+  A +LPWFF+AQT +LE E P+ D LGI  GH+YH+  T  +++ P
Sbjct:   97 VAEADFAEANTLDRVLEAWKRTPPLTKAYLTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWILMLFGQLSMVIGYPLLKLSPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAP 303          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|1210524072|dbj|GAX16801.1| (hypothetical protein FisN_5Hh173 [Fistulifera solaris])

HSP 1 Score: 225.328 bits (573), Expect = 8.594e-67
Identity = 105/205 (51.22%), Postives = 141/205 (68.78%), Query Frame = 0
Query:  197 EEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP 401
            E DF + +   ++ + ++RTPP+TKAYL AS   T    LFNKN++P  L L+W  V+ RLQIWRPFTSFL FG FG  Y+L+A F+WTYMA LE+L    P DF  M+LFG   +++G PL+   P FLGHNLS YLVY+WSR  EG +V++  +F+  A +LPWFF+AQT +LE E P+ D LGI  GH+YH+  T  +++ P
Sbjct:   97 EGDFAEANTIDRVLEAWKRTPPLTKAYLTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWIMMLFGQLSMVIGYPLLKLSPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAP 301          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|219119679|ref|XP_002180594.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217408067|gb|EEC48002.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 216.468 bits (550), Expect = 2.273e-63
Identity = 101/205 (49.27%), Postives = 138/205 (67.32%), Query Frame = 0
Query:  197 EEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP 401
            E +F + +   ++   +R+TPP+TK YL AS + T    LFN+N++P  LLLDW  V+ +LQIWR  TSFL FG  G  YL++AHF+WTYMA LE+L    P DF  M+ FG   ++VG P+    P FLGHNLS +LVY+WSR  EG +V++  LF+  A +LPWFF+AQT +LE ELP+ D LGI  GH+YH+  T  +++ P
Sbjct:  105 ESEFAEDNTVDRMIDAWRKTPPLTKGYLSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQLSMVVGYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAP 309          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|397629229|gb|EJK69265.1| (hypothetical protein THAOC_09486 [Thalassiosira oceanica])

HSP 1 Score: 213.772 bits (543), Expect = 2.183e-62
Identity = 101/233 (43.35%), Postives = 145/233 (62.23%), Query Frame = 0
Query:  197 EEDFNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKH-----FRKLYRSFEDDL 424
            E+DF D +  ++LK+ Y +TPP+TKAYL AS        L NKN++   L L W   + RLQ+WRP T+FL FGS G  YLL+  F+WTY + LE+L    P DF  M+ FG + ++ G  +MG  PH LGHNLS YLVY+WSR  EG +V++  LF+  A +LPWFF+AQT +LE + P+ D LGI  GH+YH+  +  +++ P F+  ++   +      R+ Y++   D 
Sbjct:   97 EDDFGDENTLTQLKEAYAKTPPLTKAYLTASFGAAALGYLTNKNEFLPILQLSWKPTLTRLQLWRPLTAFLNFGSLGLGYLLTIQFVWTYASTLERLNHNTPYDFWLMMFFGAAMMVTGYSIMGLNPHVLGHNLSTYLVYIWSRYHEGLEVNMFELFNTRAEMLPWFFLAQTFLLEGQAPVLDFLGIVFGHIYHHYKSTDVLRTPKFVISWYNSDNKYAEMIREKYKTISSDF 329          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|873224116|emb|CEM27117.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 210.305 bits (534), Expect = 8.011e-61
Identity = 116/257 (45.14%), Postives = 156/257 (60.70%), Query Frame = 0
Query:  180 EEDAEEDEDDYDEEGVTEEDF-NDGSFASKLK---KEYRRTPPVTKAYLMASLSVTTAA-MLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLM-------GFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHFRKLYRSFEDDL 424
            E D++ D +D   + + E DF +D S  SKL    K + RTPP+TK YL+ S  +T  A  L  K  +P  L+ DW KV+ + QIWR  T F Y G FG +YL++A F+WTYMA+LEKL  K+P  F  ++LFG++ L +  PL+          P  LGHNLS ++VYVWSR  EGQDV++M LF L A  LPWFFV QT +LE + P  DLLGIA G LYH+  +R  +K P  L+  F Q   ++ Y  +E + 
Sbjct:   86 EGDSDFDAEDDFGDSLVEADFESDNSVQSKLLDLLKAFDRTPPITKGYLLTSAFLTGGAYFLTAKKVFPRELMYDWKKVL-QGQIWRLMTGFFYIGDFGLSYLMTAQFIWTYMANLEKLNYKHPEQFAILLLFGMACLTLAYPLLNAMDPTWALVPEMLGHNLSSFIVYVWSRTHEGQDVNIMDLFQLRAEYLPWFFVMQTWLLEGQAPTFDLLGIAFGWLYHWLKSRHWLKSPPPLKDLFRQPVLKRQYEKYEKEF 341          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|944186103|dbj|BAT25220.1| (symbiotic PPC-localized Der [Nitzschia sp. IriIs04])

HSP 1 Score: 209.149 bits (531), Expect = 7.927e-60
Identity = 107/241 (44.40%), Postives = 142/241 (58.92%), Query Frame = 0
Query:  194 GVTEEDFNDGSF------ASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFF----AQKHFRKLYRSFEDDL 424
            GV E D +D +         +  + Y +TPP+TKAY+ AS   T    LFN N +P WLLLDW K+V R Q WR FT+F+ FG FG  Y L+  F+WTYM+ LE+L    P DF  M+ FG+  ++VG   +G     LGHNLS YLVYVWSR  EG DVD+  LF   A +LPWFFVAQT +LE   P+ D+LGI  GH+Y +  +  L++ P  L  ++    + K  R+ Y+    D 
Sbjct:  108 GVLEMDLDDDTAFREADPMDRFLQAYHKTPPLTKAYITASALATAYGFLFNNNVFPSWLLLDWRKIVTRGQFWRIFTTFVNFGPFGIGYALTCRFIWTYMSTLERLHHHRPYDFWIMIGFGMISMVVGYSFLGLNAQLLGHNLSTYLVYVWSRHHEGMDVDMFELFTARAELLPWFFVAQTYLLEGAPPIMDILGIVFGHVYFHCKSTGLLRAPDALVDWYVTSESAKPIRQQYKQISSDF 348          
BLAST of EWM30647.1 vs. NCBI_GenBank
Match: gi|298712989|emb|CBJ26891.1| (Derlin (Degradation in endoplasmic reticulum protein ) (Der1-like protein) [Ectocarpus siliculosus])

HSP 1 Score: 200.675 bits (509), Expect = 1.445e-55
Identity = 96/224 (42.86%), Postives = 146/224 (65.18%), Query Frame = 0
Query:  200 FNDGSFASKLKKEYRRTPPVTKAYLMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGF---QPHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPP----------AFLRVFFAQ 410
            F + SF  +LK+++++TP +T+AY   S+++T AA   N+NQWP +LLLDW   + +LQ+WR FT FL  G  G N+ L+AHF WTYM+HLEKL  + P  FV ++ FG+S LL+ + + G      + LGH+++C+LV +WSR F G  V+++ +F LP  +LP+FFVAQT+++E  +P  DL GI +G+ +   S + L+K P          AFLR  +A+
Sbjct:  115 FGEASFVDRLKQDWKKTPVITRAYFQVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAK 338          
The following BLAST results are available for this feature:
BLAST of EWM30647.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113339|gb|EWM30647.1|0.000e+0100.00der1-like domain member 2 [Nannochloropsis gaditan... [more]
gi|553187251|ref|XP_005854572.1|3.255e-9799.33degradation in endoplasmic reticulum der1-like pro... [more]
gi|676388651|ref|XP_009037604.1|4.377e-6950.67hypothetical protein AURANDRAFT_71775 [Aureococcus... [more]
gi|1210527289|dbj|GAX13924.1|4.638e-6750.72hypothetical protein FisN_5Lh173 [Fistulifera sola... [more]
gi|1210524072|dbj|GAX16801.1|8.594e-6751.22hypothetical protein FisN_5Hh173 [Fistulifera sola... [more]
gi|219119679|ref|XP_002180594.1|2.273e-6349.27predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397629229|gb|EJK69265.1|2.183e-6243.35hypothetical protein THAOC_09486 [Thalassiosira oc... [more]
gi|873224116|emb|CEM27117.1|8.011e-6145.14unnamed protein product [Vitrella brassicaformis C... [more]
gi|944186103|dbj|BAT25220.1|7.927e-6044.40symbiotic PPC-localized Der [Nitzschia sp. IriIs04... [more]
gi|298712989|emb|CBJ26891.1|1.445e-5542.86Derlin (Degradation in endoplasmic reticulum prote... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna26rna26Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications