EWM30391.1, cds258 (CDS) Nannochloropsis gaditana

Overview
NameEWM30391.1
Unique Namecds258
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:651887..652468 -

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Properties
Property NameValue
Protein idEWM30391.1
Productiron-sulfur cluster assembly 2 mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100026g58.10645.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:651887..652468 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0051536iron-sulfur cluster binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0019538protein metabolic process
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR000361FeS_biogenesis
IPR016092FeS_cluster_insertion
Homology
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|585113051|gb|EWM30391.1| (iron-sulfur cluster assembly 2 mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 399.053 bits (1024), Expect = 9.797e-141
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0
Query:    1 MLPSSVGRSSRRGISSGAWLKATKVRPQVLSPRNQPPSLRAQGIYRRSWSIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
            MLPSSVGRSSRRGISSGAWLKATKVRPQVLSPRNQPPSLRAQGIYRRSWSIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID
Sbjct:    1 MLPSSVGRSSRRGISSGAWLKATKVRPQVLSPRNQPPSLRAQGIYRRSWSIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|223993849|ref|XP_002286608.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977923|gb|EED96249.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 135.961 bits (341), Expect = 2.902e-37
Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 0
Query:   60 SSNAVSNSPQMSLDEDVVVTNACIKRIKAL-QVKTGKENLKLRLSVEGGGCSGFTYTFTM---------------EDGPVE-DDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMKNFEKNPAID 193
            S+N V+ +   S + ++ +T +C  RIK L   +   +++ LRL V+ GGCSGF Y F +               EDG ++ D+D ++ ++G +VVVD+ SLE +RGST+D+ ++M+RS+FAV+SNP SESACGCGSSFA+KNFE NPA+D
Sbjct:   21 STNEVTITNSTSSEGELTITASCAARIKQLASTRPNPDSIYLRLYVDAGGCSGFQYKFLLLSEDNDMNNSLEDDEEDGAIDPDEDIIFVKDGMRVVVDQTSLELLRGSTIDYVQEMIRSSFAVMSNPQSESACGCGSSFAVKNFETNPALD 171          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|971516142|dbj|GAQ82066.1| (ISCA-like protein [Klebsormidium nitens])

HSP 1 Score: 130.183 bits (326), Expect = 5.645e-35
Identity = 63/114 (55.26%), Postives = 87/114 (76.32%), Query Frame = 0
Query:   73 DEDVVVTNACIKRIKALQVKTG--KENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            D+ V +T +C +R+K LQ + G   + L LRLSVEGGGCSGF Y+F++ D  ++ DD+V+ R GAQ++VD+ S  FV+G+TVDF+E+++RSAF VV NP S SACGCG+SFA K
Sbjct:   59 DDTVHITESCAQRLKELQQEEGVSPDQLMLRLSVEGGGCSGFQYSFSL-DSKLQPDDRVFRRNGAQLLVDKVSYAFVKGATVDFSEELIRSAFTVVDNPNSTSACGCGTSFAAK 171          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|755990179|ref|XP_011312432.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Fopius arisanus])

HSP 1 Score: 126.716 bits (317), Expect = 8.921e-34
Identity = 56/135 (41.48%), Postives = 97/135 (71.85%), Query Frame = 0
Query:   50 SIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            S+   + R++++NA  N  + +L    +++++C+KR+K +     ++   LR++VEGGGCSGF Y F + D  V DDDKV+ ++GA++++D  SLE+V+GST+DF  +++RSAF +++NPL+E  C CG+SF++K
Sbjct:   33 SLQNGNLRKVATNAAENVSEDAL----IISDSCVKRLKEI----SQDGACLRVTVEGGGCSGFQYKFDL-DSTVHDDDKVFLKDGAKIIIDSTSLEYVKGSTIDFHSELIRSAFRIINNPLAEQGCSCGASFSIK 158          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|817193571|ref|XP_012272251.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Orussus abietinus])

HSP 1 Score: 126.716 bits (317), Expect = 1.170e-33
Identity = 64/157 (40.76%), Postives = 102/157 (64.97%), Query Frame = 0
Query:   28 QVLSPRNQPPSLRAQGIYRRSWSIYRHDFRQLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            + +SP +  P      +  R WS         S+N  S++P      D+++ ++CI+R+K L  K   +++ LR+SVEGGGCSGF YTF + D  V +DDKV+ ++GA+V+ D  +LE+++GST+++  +++RSAF VV NPL+E  C CG+SFA+K
Sbjct:   18 RYISPLSTFPCRELSALITR-WS---------STNLASSTPT----SDLIIDDSCIQRLKEL-TKGSDKDMFLRISVEGGGCSGFRYTFDL-DSNVNEDDKVFQKDGAKVIADSTTLEYIKGSTIEYHTELIRSAFRVVGNPLAEQGCSCGASFAIK 158          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|1000716476|ref|XP_015588788.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Cephus cinctus])

HSP 1 Score: 125.561 bits (314), Expect = 2.713e-33
Identity = 55/126 (43.65%), Postives = 93/126 (73.81%), Query Frame = 0
Query:   59 LSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            + ++A +NS Q + ++D++++++C KR+K +          LR++VEGGGCSGF Y F + D  + +DDKV+ ++GA+VV+D  SLE+V+GST+D+ ++++RSAF + +NPL+E  C CG+SFA+K
Sbjct:   33 VKASASTNSSQDAAEDDLIISDSCAKRLKEI----ASNGACLRVTVEGGGCSGFQYKFDL-DSKINEDDKVFQKDGAKVVIDSTSLEYVKGSTIDYHKELIRSAFRITNNPLAEQGCSCGASFAIK 153          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|698803228|ref|XP_009834643.1| (hypothetical protein H257_09952 [Aphanomyces astaci] >gi|574110502|gb|ETV76001.1| hypothetical protein H257_09952 [Aphanomyces astaci])

HSP 1 Score: 124.79 bits (312), Expect = 2.965e-33
Identity = 55/110 (50.00%), Postives = 82/110 (74.55%), Query Frame = 0
Query:   75 DVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            D+++T A   ++ AL  +T      LR++VEGGGCSGF Y  T+ED P+E+DD+V+ ++GA VVVD  S++ ++GSTVDF ++++RS+F V++NP + S CGCGSSF MK
Sbjct:   25 DLIITKATSNQLNALN-RTAATKQHLRVAVEGGGCSGFQYVITLEDTPLEEDDRVFEKDGAAVVVDPTSMDLLKGSTVDFAQELIRSSFTVINNPNAVSGCGCGSSFEMK 133          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|970888007|ref|XP_015109139.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Diachasma alloeum])

HSP 1 Score: 125.176 bits (313), Expect = 4.683e-33
Identity = 52/122 (42.62%), Postives = 91/122 (74.59%), Query Frame = 0
Query:   63 AVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            A +N+ +   ++ ++++++C++R+K +     ++   LR++VEGGGCSGF Y F + D  V DDDKV+ ++GA++++D  SLE+V+GST+DF  +++RSAF +++NPL+E  C CG+SFA+K
Sbjct:   42 AATNAAEDVSEDALIISDSCVRRLKEI----SQDGACLRVTVEGGGCSGFQYKFDL-DSTVHDDDKVFQKDGAKIIIDSTSLEYVKGSTIDFHSELIRSAFRIINNPLAEQGCSCGASFAIK 158          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|642929363|ref|XP_008195804.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Tribolium castaneum])

HSP 1 Score: 124.405 bits (311), Expect = 5.827e-33
Identity = 58/149 (38.93%), Postives = 98/149 (65.77%), Query Frame = 0
Query:   39 LRAQGIYRRSWSIYRHDFRQLSSNAVSN---SPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            ++  G+ RR +    +  R   S   S     P   +  ++++T+ C++R+K +   + +    LR+SV+GGGCSGF Y F + D  + +DDK++ + GA+VV+DE SL+FVRG+TVD+ E++++S+F +V+NPL+E  C CGSSFA++
Sbjct:    1 MKMSGLVRRFYPFKINSVRNFLSRNYSKPVIKPLEHIKPELIITDTCVERLKNISKNSDEF---LRVSVDGGGCSGFQYKFDL-DSKINEDDKIFEKNGAKVVIDETSLDFVRGATVDYREELIKSSFRIVNNPLAEQGCSCGSSFAVR 145          
BLAST of EWM30391.1 vs. NCBI_GenBank
Match: gi|1080050296|ref|XP_018566595.1| (PREDICTED: iron-sulfur cluster assembly 2 homolog, mitochondrial [Anoplophora glabripennis])

HSP 1 Score: 124.02 bits (310), Expect = 7.503e-33
Identity = 56/117 (47.86%), Postives = 89/117 (76.07%), Query Frame = 0
Query:   68 PQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMEDGPVEDDDKVYGREGAQVVVDEGSLEFVRGSTVDFTEDMMRSAFAVVSNPLSESACGCGSSFAMK 184
            P  ++  ++ +T+ CI+R+K  ++  G ++  LR+SVEGGGCSGF Y F + D  + DDDKV+ R GA+VV+DE SLE+V+G+TVD+ E+++R++F +V+NPL+E  C CG+SFA++
Sbjct:   32 PLENVKAELNITDKCIERLK--KIVNGSDSF-LRVSVEGGGCSGFQYKFDL-DNKLTDDDKVFERNGAKVVIDETSLEYVKGATVDYQEELIRASFKIVNNPLAEQGCSCGASFAVR 144          
The following BLAST results are available for this feature:
BLAST of EWM30391.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113051|gb|EWM30391.1|9.797e-141100.00iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
gi|223993849|ref|XP_002286608.1|2.902e-3745.70predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|971516142|dbj|GAQ82066.1|5.645e-3555.26ISCA-like protein [Klebsormidium nitens][more]
gi|755990179|ref|XP_011312432.1|8.921e-3441.48PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
gi|817193571|ref|XP_012272251.1|1.170e-3340.76PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
gi|1000716476|ref|XP_015588788.1|2.713e-3343.65PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
gi|698803228|ref|XP_009834643.1|2.965e-3350.00hypothetical protein H257_09952 [Aphanomyces astac... [more]
gi|970888007|ref|XP_015109139.1|4.683e-3342.62PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
gi|642929363|ref|XP_008195804.1|5.827e-3338.93PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
gi|1080050296|ref|XP_018566595.1|7.503e-3347.86PREDICTED: iron-sulfur cluster assembly 2 homolog,... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna258rna258Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications