EWM30379.1, cds255 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|585113039|gb|EWM30379.1| (eukaryotic translation initiation factor 6 [Nannochloropsis gaditana]) HSP 1 Score: 651.358 bits (1679), Expect = 0.000e+0 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MCLSLPPRSKRRWYMRLFAWRWLLIAVQWKRELTLRAKRSPIGGPTPPLMDIKNTAPLLNIKTAGLLFWGSSMATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA 317
MCLSLPPRSKRRWYMRLFAWRWLLIAVQWKRELTLRAKRSPIGGPTPPLMDIKNTAPLLNIKTAGLLFWGSSMATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA
Sbjct: 1 MCLSLPPRSKRRWYMRLFAWRWLLIAVQWKRELTLRAKRSPIGGPTPPLMDIKNTAPLLNIKTAGLLFWGSSMATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA 317
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|301118236|ref|XP_002906846.1| (eukaryotic translation initiation factor 6 [Phytophthora infestans T30-4] >gi|262108195|gb|EEY66247.1| eukaryotic translation initiation factor 6 [Phytophthora infestans T30-4]) HSP 1 Score: 429.869 bits (1104), Expect = 5.018e-150 Identity = 199/244 (81.56%), Postives = 224/244 (91.80%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSYCL +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV +GNKRGLL+PSTTTDQE+QHIRN+LPD+VVVQRVEERLSALGNCI NDHVALVHTDLDRETEEIVAD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGTVNRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+ P N+ T+R++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTNIATTMRSALIDSM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|695377323|ref|XP_009515984.1| (hypothetical protein PHYSODRAFT_322344 [Phytophthora sojae] >gi|348688895|gb|EGZ28709.1| hypothetical protein PHYSODRAFT_322344 [Phytophthora sojae]) HSP 1 Score: 429.098 bits (1102), Expect = 1.023e-149 Identity = 198/244 (81.15%), Postives = 224/244 (91.80%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSYCL +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV +GNKRGLL+PSTTTDQE+QHIRNSLPD+VVVQRVEERLSALGNCI NDHVALVHTDLDRETEEIVAD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGTVNRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+ P ++ T+R++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNSLPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPASIATTMRSALIDSM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|675179709|ref|XP_008898739.1| (eukaryotic translation initiation factor 6 [Phytophthora parasitica INRA-310] >gi|566008224|gb|ETI31135.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica P1569] >gi|567945706|gb|ETK71517.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica] >gi|567974366|gb|ETL24961.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica] >gi|568033745|gb|ETM31439.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica] >gi|568101725|gb|ETN16411.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica INRA-310] >gi|570311902|gb|ETO59850.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica P1976] >gi|570935697|gb|ETP00954.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica CJ01A1] >gi|570965971|gb|ETP29090.1| eukaryotic translation initiation factor 6 [Phytophthora parasitica P10297] >gi|970644935|gb|KUF85582.1| Eukaryotic translation initiation factor 6 [Phytophthora nicotianae] >gi|970656456|gb|KUF94465.1| Tenascin [Phytophthora nicotianae]) HSP 1 Score: 427.943 bits (1099), Expect = 3.413e-149 Identity = 198/244 (81.15%), Postives = 223/244 (91.39%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSYCL +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV +GNKRGLL+PSTTTDQE+QHIRN+LPD VVVQRVEERLSALGNCI NDHVALVHTDLDRETEEIVAD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGTVNRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+ P ++ T+R++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDTVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPASIATTMRSALIDSM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|1214697355|gb|OWZ10651.1| (Eukaryotic translation initiation factor 6 [Phytophthora megakarya]) HSP 1 Score: 427.557 bits (1098), Expect = 5.007e-149 Identity = 197/244 (80.74%), Postives = 224/244 (91.80%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSYCL +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV +GNKRGLL+PSTTTDQE+QHIRN+LPD+VVVQRVEERLSALGNCI NDHVALVHTDLDRETEEIVAD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EELSSLLQ+P+VAGTVNRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+ P ++ ++R++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDSVVVQRVEERLSALGNCIATNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEELSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPTSIATSMRSALIDSM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|568003835|gb|ETL78176.1| (eukaryotic translation initiation factor 6 [Phytophthora parasitica]) HSP 1 Score: 426.402 bits (1095), Expect = 1.284e-148 Identity = 197/244 (80.74%), Postives = 222/244 (90.98%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSYCL +GGSENFYS FE ELADHIPV+HAS+AGCRF+GRV +GNKRGLL+PSTTTDQE+QHIRN+LPD VVVQRVEERLSALGNCI NDHVALVHTDLDRETEEIVAD LGVEVFRQT+AGNALVGSYS ++NQG +VHP+T+VED EE SSLLQ+P+VAGTVNRGSDV+GAGLV NDW AFCGLDTTSTEISVVESIFKLQ+ P ++ T+R++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYCLVCVGGSENFYSTFESELADHIPVVHASIAGCRFVGRVAVGNKRGLLLPSTTTDQEMQHIRNALPDTVVVQRVEERLSALGNCITTNDHVALVHTDLDRETEEIVADTLGVEVFRQTVAGNALVGSYSALSNQGCLVHPRTSVEDQEEFSSLLQVPVVAGTVNRGSDVIGAGLVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPASIATTMRSALIDSM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|635369806|emb|CCI42026.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 424.476 bits (1090), Expect = 7.574e-148 Identity = 198/245 (80.82%), Postives = 226/245 (92.24%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA 317
MA R QFENSNEIGVFS++TNSYCL +GGSENFYS FE ELADHIPVIHAS+AGCRF+GRV +GNKRGLL+P+TTTDQELQHIRN+LPD+VVVQRVEERLSALGNCIV+NDHVALVHTDLDR+TEEIVADVLGVEVFRQTIAGNALVGSY ++NQG +VHP+T+ EDLEELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+ P++ T+R +LIDS+A
Sbjct: 1 MAIRCQFENSNEIGVFSKVTNSYCLVCVGGSENFYSNFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQELQHIRNALPDSVVVQRVEERLSALGNCIVSNDHVALVHTDLDRDTEEIVADVLGVEVFRQTIAGNALVGSYCGLSNQGCLVHPRTSAEDLEELSSLLQVPVVAGTINRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPMSTSSTIRNALIDSMA 245
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|325180225|emb|CCA14628.1| (eukaryotic translation initiation factor 6 putative [Albugo laibachii Nc14]) HSP 1 Score: 417.157 bits (1071), Expect = 5.593e-145 Identity = 193/244 (79.10%), Postives = 222/244 (90.98%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS++TNSYCL +GGSENFYS FE ELADHIPVIHAS+AGCRF+GRV +GNKRGLL+P+TTTDQE QHIRN+LPD+VVVQRVEERLSALGNCIV+NDHVALVHTDLDR+TEEIVAD LGVEVFR+TIAGNALVGSY ++NQG +VHP+T+ EDLEELSSLLQ+P+VAGT+NRGSDV+GAGLV NDW AFCGLDTTSTEISV+ESIFKLQ+ P+ T+R +LID++
Sbjct: 1 MAIRCQFENSNEIGVFSKVTNSYCLVCVGGSENFYSNFEAELADHIPVIHASIAGCRFVGRVAVGNKRGLLLPNTTTDQEFQHIRNALPDSVVVQRVEERLSALGNCIVSNDHVALVHTDLDRDTEEIVADALGVEVFRETIAGNALVGSYCGLSNQGCLVHPRTSAEDLEELSSLLQVPVVAGTINRGSDVIGAGLVVNDWTAFCGLDTTSTEISVIESIFKLQNAQPMTASSTIRNALIDTM 244
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|159470923|ref|XP_001693606.1| (eukaryotic initiation factor [Chlamydomonas reinhardtii] >gi|158283109|gb|EDP08860.1| eukaryotic initiation factor [Chlamydomonas reinhardtii]) HSP 1 Score: 412.92 bits (1060), Expect = 2.729e-143 Identity = 188/245 (76.73%), Postives = 226/245 (92.24%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSLA 317
MATR QFENSN++GVF++LTN+YC+ ALGG+ENFYS+FE EL+DHIPVI SVAG R +GR+T+GN+ GLL+P+TT+DQELQHIRN LPD VVVQR++ERLSALGNCIV ND+VAL+H D+DRETEEIVADVLGVEVFRQT+AGN LVGSY+ +TNQGG+VHPKT++EDL+ELSSLLQIPLVAGT+NRGSDV+GAGLVANDWAAFCGLDTTSTE+SV+ES+FKL+D P+N+V LR SLID++A
Sbjct: 1 MATRTQFENSNDVGVFAKLTNAYCICALGGAENFYSVFEAELSDHIPVIKTSVAGTRLVGRLTVGNRNGLLLPNTTSDQELQHIRNCLPDEVVVQRIDERLSALGNCIVCNDYVALIHPDIDRETEEIVADVLGVEVFRQTVAGNVLVGSYAALTNQGGLVHPKTSIEDLDELSSLLQIPLVAGTINRGSDVIGAGLVANDWAAFCGLDTTSTELSVIESVFKLRDAQPMNIVNDLRASLIDTMA 245
BLAST of EWM30379.1 vs. NCBI_GenBank
Match: gi|673053749|ref|XP_008880835.1| (eukaryotic translation initiation factor 6 [Aphanomyces invadans] >gi|574463448|gb|ETV90519.1| eukaryotic translation initiation factor 6 [Aphanomyces invadans]) HSP 1 Score: 412.149 bits (1058), Expect = 5.040e-143 Identity = 194/244 (79.51%), Postives = 219/244 (89.75%), Query Frame = 0
Query: 73 MATRLQFENSNEIGVFSRLTNSYCLTALGGSENFYSIFEQELADHIPVIHASVAGCRFIGRVTIGNKRGLLVPSTTTDQELQHIRNSLPDAVVVQRVEERLSALGNCIVANDHVALVHTDLDRETEEIVADVLGVEVFRQTIAGNALVGSYSYITNQGGMVHPKTTVEDLEELSSLLQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 316
MA R QFENSNEIGVFS+LTNSY L +GGSENFYS FE ELADHIPVIH S+A CRFIGRV++GNKRGLL+P++TTDQE+QHIRNSLPD+VVVQRVEERLSALGN + NDHVALVHTDLDRETEEI+AD LGVEVFRQTIAGNALVGSYS ++NQG +VHP+TTV+D EELSSLLQ+P+VAGTVNRGSDVLGAG+V NDW AFCGLDTTSTEISVVESIFKLQ+ P + LR++LIDS+
Sbjct: 1 MAIRCQFENSNEIGVFSKLTNSYALVCVGGSENFYSTFEAELADHIPVIHCSMASCRFIGRVSVGNKRGLLLPNSTTDQEMQHIRNSLPDSVVVQRVEERLSALGNVVACNDHVALVHTDLDRETEEIIADTLGVEVFRQTIAGNALVGSYSVMSNQGCLVHPRTTVDDQEELSSLLQVPVVAGTVNRGSDVLGAGMVVNDWTAFCGLDTTSTEISVVESIFKLQNAQPNAIASNLRSALIDSM 244 The following BLAST results are available for this feature:
BLAST of EWM30379.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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