EWM28135.1, cds2544 (CDS) Nannochloropsis gaditana

Overview
NameEWM28135.1
Unique Namecds2544
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:644778..645671 -
Alignment locationCM002459.1:644460..644669 -
Alignment locationCM002459.1:643736..644356 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28135.1
ProductRNA binding protein
Orig transcript idgnl|cribi|Naga_100036g33.2555.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:644778..645671 -
CM002459.1supercontigCM002459.1:644460..644669 -
CM002459.1supercontigCM002459.1:643736..644356 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|585110479|gb|EWM28135.1| (RNA binding protein [Nannochloropsis gaditana])

HSP 1 Score: 1160.21 bits (3000), Expect = 0.000e+0
Identity = 574/574 (100.00%), Postives = 574/574 (100.00%), Query Frame = 0 
Query:    1 METSNTASASGVAGATSAGDGGKGTFNTFVTQSGAGLFAYEPQFPKCSPTSSSPSSSPPPHTLQESTGVAAAAGCVLGDSRPHSSTPTLDSTEGASSPTRAGKEVVAQTLTHIQKQEDEGFSHSVSPSEEAQQPADKSTGKSSCGGCTTSIPGEVSDNVVVPVAEKLVQQQTLDSMAHPPGAVGPNAAILNNLLGDKYRQNPPGSLVSGPSSTTDLDASLAVATLGMGGLGIRQEEAHMVNAEAFMMAQQQQQHQQQHSFMQTFHRPQGPPRVSVDGMGTGLPASLFNQNAGLLAAQQVQPNPTLVQQQTLAQNVYSKYGIVTNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLHMPGFGGSMAAPVAPASSPDLSHIQSMNALGPGVSVPFHALQRWQPQFSGAAPLQQVPYGLPMQQPQSHQQQQQQQQQQQQQQLARSGMVAQSGALSENLGGGVAGTGALGAHTVSNGSSSTAAVKSSGGPYLSSVNGLYQA 574
            METSNTASASGVAGATSAGDGGKGTFNTFVTQSGAGLFAYEPQFPKCSPTSSSPSSSPPPHTLQESTGVAAAAGCVLGDSRPHSSTPTLDSTEGASSPTRAGKEVVAQTLTHIQKQEDEGFSHSVSPSEEAQQPADKSTGKSSCGGCTTSIPGEVSDNVVVPVAEKLVQQQTLDSMAHPPGAVGPNAAILNNLLGDKYRQNPPGSLVSGPSSTTDLDASLAVATLGMGGLGIRQEEAHMVNAEAFMMAQQQQQHQQQHSFMQTFHRPQGPPRVSVDGMGTGLPASLFNQNAGLLAAQQVQPNPTLVQQQTLAQNVYSKYGIVTNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLHMPGFGGSMAAPVAPASSPDLSHIQSMNALGPGVSVPFHALQRWQPQFSGAAPLQQVPYGLPMQQPQSHQQQQQQQQQQQQQQLARSGMVAQSGALSENLGGGVAGTGALGAHTVSNGSSSTAAVKSSGGPYLSSVNGLYQA
Sbjct:    1 METSNTASASGVAGATSAGDGGKGTFNTFVTQSGAGLFAYEPQFPKCSPTSSSPSSSPPPHTLQESTGVAAAAGCVLGDSRPHSSTPTLDSTEGASSPTRAGKEVVAQTLTHIQKQEDEGFSHSVSPSEEAQQPADKSTGKSSCGGCTTSIPGEVSDNVVVPVAEKLVQQQTLDSMAHPPGAVGPNAAILNNLLGDKYRQNPPGSLVSGPSSTTDLDASLAVATLGMGGLGIRQEEAHMVNAEAFMMAQQQQQHQQQHSFMQTFHRPQGPPRVSVDGMGTGLPASLFNQNAGLLAAQQVQPNPTLVQQQTLAQNVYSKYGIVTNGGYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLHMPGFGGSMAAPVAPASSPDLSHIQSMNALGPGVSVPFHALQRWQPQFSGAAPLQQVPYGLPMQQPQSHQQQQQQQQQQQQQQLARSGMVAQSGALSENLGGGVAGTGALGAHTVSNGSSSTAAVKSSGGPYLSSVNGLYQA 574
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|301108515|ref|XP_002903339.1| (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >gi|262097711|gb|EEY55763.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 160.999 bits (406), Expect = 6.390e-42
Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLHMPG 436
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K+   M G
Sbjct:  120 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKSQGQMFG 230
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|301108523|ref|XP_002903343.1| (CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4] >gi|262097715|gb|EEY55767.1| CUG-BP- and ETR-3-like factor, putative [Phytophthora infestans T30-4])

HSP 1 Score: 160.229 bits (404), Expect = 1.461e-41
Identity = 74/105 (70.48%), Postives = 85/105 (80.95%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKA 430
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K+
Sbjct:  125 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEKS 229
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|695427139|ref|XP_009529602.1| (hypothetical protein PHYSODRAFT_346711 [Phytophthora sojae] >gi|348676035|gb|EGZ15853.1| hypothetical protein PHYSODRAFT_346711 [Phytophthora sojae])

HSP 1 Score: 159.844 bits (403), Expect = 2.219e-41
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  127 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 230
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|1214713719|gb|OWZ24601.1| (hypothetical protein PHMEG_000277 [Phytophthora megakarya])

HSP 1 Score: 159.458 bits (402), Expect = 2.455e-41
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  121 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 224
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|675191011|ref|XP_008904390.1| (hypothetical protein PPTG_10740 [Phytophthora parasitica INRA-310] >gi|566025322|gb|ETI48233.1| hypothetical protein F443_07724 [Phytophthora parasitica P1569] >gi|568020596|gb|ETL94723.1| hypothetical protein L917_07384 [Phytophthora parasitica] >gi|568095185|gb|ETN09953.1| hypothetical protein PPTG_10740 [Phytophthora parasitica INRA-310] >gi|570328957|gb|ETO76905.1| hypothetical protein F444_07791 [Phytophthora parasitica P1976])

HSP 1 Score: 159.458 bits (402), Expect = 2.799e-41
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  125 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|970659717|gb|KUF97331.1| (hypothetical protein AM588_10011703 [Phytophthora nicotianae])

HSP 1 Score: 159.073 bits (401), Expect = 2.800e-41
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  111 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 214
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|567967341|gb|ETK92521.1| (hypothetical protein L915_04208 [Phytophthora parasitica] >gi|567995800|gb|ETL45930.1| hypothetical protein L916_04162 [Phytophthora parasitica] >gi|568051022|gb|ETM47942.1| hypothetical protein L914_07471 [Phytophthora parasitica] >gi|570957524|gb|ETP22503.1| hypothetical protein F441_04299 [Phytophthora parasitica CJ01A1] >gi|570992969|gb|ETP50385.1| hypothetical protein F442_04320 [Phytophthora parasitica P10297] >gi|970635544|gb|KUF80411.1| CUGBP Elav family member 2 [Phytophthora nicotianae] >gi|970663193|gb|KUG00428.1| CUGBP Elav family member 2 [Phytophthora nicotianae])

HSP 1 Score: 159.458 bits (402), Expect = 2.946e-41
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  125 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSAEAAIKGMNGFQVGRKRLKVQHKKEK 228
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|1173942837|gb|OQR91773.1| (CUG-BP- and ETR-3-like factor [Achlya hypogyna])

HSP 1 Score: 157.918 bits (398), Expect = 1.179e-40
Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDKASLH 433
            GY   +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K  ++
Sbjct:  142 GYAPQVAGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEKGGMY 249
[Close]
BLAST of EWM28135.1 vs. NCBI_GenBank
Match: gi|953500873|emb|CEG37906.1| (cug-bp-and etr-3-like [Plasmopara halstedii])

HSP 1 Score: 157.532 bits (397), Expect = 1.227e-40
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0 
Query:  326 GYPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQMFSTFGQVISARIMVDKVTGRSRGFGFVSYNNHDSALQAIKAMNGFVVGHKRLKVEQKKDK 429
            GYP  +  PG PI+TT+S +GP GCNLFVFHIPNDMTN DL+  F+TFG VISARIMV+K TGRSRGFGFVSY+N  SA  AIK MNGF VG KRLKV+ KK+K
Sbjct:  125 GYPPQIVGPGPPIQTTESGQGPPGCNLFVFHIPNDMTNQDLFNYFATFGNVISARIMVEKETGRSRGFGFVSYDNAPSADAAIKGMNGFQVGRKRLKVQHKKEK 228
The following BLAST results are available for this feature:
BLAST of EWM28135.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110479|gb|EWM28135.1|0.000e+0100.00RNA binding protein [Nannochloropsis gaditana][more]
gi|301108515|ref|XP_002903339.1|6.390e-4268.47CUG-BP- and ETR-3-like factor, putative [Phytophth... [more]
gi|301108523|ref|XP_002903343.1|1.461e-4170.48CUG-BP- and ETR-3-like factor, putative [Phytophth... [more]
gi|695427139|ref|XP_009529602.1|2.219e-4171.15hypothetical protein PHYSODRAFT_346711 [Phytophtho... [more]
gi|1214713719|gb|OWZ24601.1|2.455e-4171.15hypothetical protein PHMEG_000277 [Phytophthora me... [more]
gi|675191011|ref|XP_008904390.1|2.799e-4171.15hypothetical protein PPTG_10740 [Phytophthora para... [more]
gi|970659717|gb|KUF97331.1|2.800e-4171.15hypothetical protein AM588_10011703 [Phytophthora ... [more]
gi|567967341|gb|ETK92521.1|2.946e-4171.15hypothetical protein L915_04208 [Phytophthora para... [more]
gi|1173942837|gb|OQR91773.1|1.179e-4067.59CUG-BP- and ETR-3-like factor [Achlya hypogyna][more]
gi|953500873|emb|CEG37906.1|1.227e-4071.15cug-bp-and etr-3-like [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2552rna2552Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications