EWM28121.1, cds2537 (CDS) Nannochloropsis gaditana

Overview
NameEWM28121.1
Unique Namecds2537
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:627815..627977 +
Alignment locationCM002459.1:628215..629707 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28121.1
Productfusca protein fus6
Orig transcript idgnl|cribi|Naga_100036g40.2541.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:627815..627977 +
CM002459.1supercontigCM002459.1:628215..629707 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR01958526S_proteasome_reg_su-Rpn7
IPR011991WHTH_DNA-bd_dom
IPR000717PCI_dom
Homology
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|585110465|gb|EWM28121.1| (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 1129.39 bits (2920), Expect = 0.000e+0
Identity = 551/551 (100.00%), Postives = 551/551 (100.00%), Query Frame = 0
Query:    1 MQAVLSTAEEAGMDVDAHMDGQAGGGAKDDTSNLTGANAESGSGANDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 551
            MQAVLSTAEEAGMDVDAHMDGQAGGGAKDDTSNLTGANAESGSGANDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG
Sbjct:    1 MQAVLSTAEEAGMDVDAHMDGQAGGGAKDDTSNLTGANAESGSGANDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 551          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|585110466|gb|EWM28122.1| (fusca protein fus6 [Nannochloropsis gaditana])

HSP 1 Score: 1022.69 bits (2643), Expect = 0.000e+0
Identity = 497/497 (100.00%), Postives = 497/497 (100.00%), Query Frame = 0
Query:   55 DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 551
            DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG
Sbjct:   43 DIDTYAARYAGYTKLRRLLFIAQHCKSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEAETRGGAGGGGDARSGGRAGTLGSPHPSQGRAARGQGAGGGTSQARGGDAVLEGESSPEEDTDMGEDFGSANQQDPDLEATLTGEG 539          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|168011167|ref|XP_001758275.1| (predicted protein [Physcomitrella patens] >gi|162690731|gb|EDQ77097.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 417.157 bits (1071), Expect = 1.196e-138
Identity = 207/407 (50.86%), Postives = 279/407 (68.55%), Query Frame = 0
Query:   54 FDIDTYAARYAGYTKLRRLLFIAQHCKSR--ELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLL 458
             D+++YA+ Y+G+TK+ RL FIA H  SR  EL+A R+ALD + +    N  L+++ +  + GRLGP Y LD  W + +++RAA ++E+LE +L   RT + KESIR+GY DLG+FHYARGDL  A K +VRTRDYC+ ++H + MCLNVI VS+ L  F HVS YVSKA+    + DP V  KLK AAGLA L    Y  AARKF+D         T  + G ++++ V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CLG L  LKP LLLD+HL+ HVE+LY++IR + L+QY  P++SVDL +MA+ F T +  LEKE+A LI  N++ ARIDS  K L+ R  D R   +++V   G +F RE RAML R +L+
Sbjct:   19 IDVESYASLYSGHTKIARLHFIADHSNSRNLELEALRMALDEIRKGE--NTVLFKECVEKINGRLGPGYGLDQEWIDTVERRAAQRQEKLEMELNGYRTNLIKESIRMGYNDLGDFHYARGDLQQAFKCYVRTRDYCTTSKHIIAMCLNVILVSIELGHFVHVSNYVSKADQTPDVQDPVVLAKLKCAAGLAHLESKKYKLAARKFVD---------TNFELG-SNYSDVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELIHDFYASRYASCLGYLQKLKPNLLLDIHLYDHVETLYEQIRHKALIQYTNPFISVDLNTMASAFKTSVTGLEKELAALITENQIQARIDSHNKILYARHADQRNTTFQRVLQTGSDFQRETRAMLLRANLM 413          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|1026756136|gb|OAE18628.1| (hypothetical protein AXG93_1923s1850 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 418.313 bits (1074), Expect = 1.866e-138
Identity = 209/417 (50.12%), Postives = 279/417 (66.91%), Query Frame = 0
Query:   51 APNFDIDTYAARYAGYTKLRRLLFIAQHCKSR--ELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVE 465
            A   D+++YA+ Y G+TK+ RL FIA HC SR  EL+A R+A D +   R  N  LYR+ +  +AGRLG  Y LD  W + +D+RAA ++E+LE +L   +T + KESIR+GY DLG+F Y RGDL  A K +VRTRDYC+ ++H + MCLNVI VS+ L  F HVS YVSKA+    + DP V  KL+ AAGLA L    Y  AARKF+D         T  + G  +F  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CLG L  LKP LLLD+HL+ HVE+LY+++R + L+QY  P++SVDL +MA+ F T +  LEKE+A LI+ N++ ARIDS  K L  R  D R A +++V   G +F R+ RAML R +L+ H   ++
Sbjct:   43 AEQMDVESYASLYTGHTKIARLHFIADHCHSRALELEALRMASDEI--KRGENTALYRESVDKIAGRLGSTYLLDQEWVDVVDRRAAQRQEKLEMELNGYKTNLIKESIRMGYNDLGDFFYGRGDLQQAFKCYVRTRDYCTTSKHIIAMCLNVILVSIELGQFVHVSNYVSKADQTPDVQDPIVLAKLRCAAGLAHLESKKYKLAARKFVD---------THFELGN-NFTEVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEVRELIHDFYASRYASCLGYLQKLKPNLLLDIHLYDHVEALYEQVRHKALIQYTNPFISVDLNTMASAFKTSVAGLEKELAALIMENQIQARIDSHNKILFARHADQRNATFQRVLQTGSDFQRDTRAMLLRANLMRHDFIMK 447          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|848886862|ref|XP_012843671.1| (PREDICTED: COP9 signalosome complex subunit 1 [Erythranthe guttata] >gi|604321488|gb|EYU32064.1| hypothetical protein MIMGU_mgv1a006374mg [Erythranthe guttata])

HSP 1 Score: 414.075 bits (1063), Expect = 4.376e-137
Identity = 208/444 (46.85%), Postives = 286/444 (64.41%), Query Frame = 0
Query:   20 DGQAGGGAKDDTSNLTGAN-AESGSGANDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 460
            D  AG    +D   + G N A+S       I     D++ YAA Y G TK+ RLLFIA+ C   S +L+A R+A D + +    N QL+R V+  +AGRLGP Y  D  WA+ +D+RA +++E+LE++L   RT + KESIR+GY D G+F+Y  G L  A KN+VRTRDYC+ ++H V MCLN I VS+ +  F HV++YVSKAE +    DP    KL+ AAGLA L    Y  AARKFL+ GP         + G  S+  V+AP+D+ATYG LCALA+ DR ELK  +++N  F+  L+LVP +RELI DF  S Y +CL  L  LK  LLLD+HLH HVE+LY++IR + ++QY +P++SVDL  MAN F++ +  LEKE+AGLI  +++ ARIDS  K L+ R  D R   +++V   G EF +E+RAML R +L++H
Sbjct:    5 DDTAGTIIDEDEICINGGNDAQSSQRHRPIISGEQLDVEAYAALYTGRTKVTRLLFIAEKCGVPSMQLEALRMAYDEIKKGE--NTQLFRDVLAKIAGRLGPNYGPDNAWADAVDRRAELRREKLENELNAYRTNLIKESIRMGYNDFGDFYYLHGQLGEAFKNYVRTRDYCTTSKHIVHMCLNAILVSIEMGQFTHVTSYVSKAEQSQDALDPVTIAKLRCAAGLAHLEGKKYKLAARKFLETGP---------ELGN-SYTEVIAPQDIATYGSLCALATFDRAELKSKVIDNVNFRNFLELVPEIRELINDFHTSHYASCLEYLGNLKANLLLDIHLHDHVETLYEQIRSKAIIQYTLPFVSVDLNMMANAFNSSVTGLEKELAGLITNDQIQARIDSHNKILYARHADQRNGTFQRVLQTGSEFDQEVRAMLLRANLIKH 436          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|1070964966|gb|OEL29857.1| (COP9 signalosome complex subunit 1 [Dichanthelium oligosanthes])

HSP 1 Score: 414.075 bits (1063), Expect = 4.459e-137
Identity = 198/412 (48.06%), Postives = 280/412 (67.96%), Query Frame = 0
Query:   51 APNFDIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 460
            A   D++ YA +Y+G T+L RL+F+A+ C  ++ +L+A R+A D +   R  ++QL+R V   + GRLGP Y LD  W + + +RA  +KE+LE++L   RT + KESIR+GY D+G+F YA G L +A K+++RTRDYC+ ++H V+MC+NVI VS+ L  FAHVS YVSKAE    + DP +  KL+AAAGLA L    Y  AARKF++   +G+  G        +++ V+AP+DVA YG LCALAS DR +LK  +++N  F+  L+LVP VREL+ DF  SRYG+CLG L  LKP LLLD+HLH HVE+LY  IR + ++QY +P++SVDL +MA  F T +  LEKE+A LI  N++ ARIDS  K L+ R  D R   +++V   G EF R++++ML R +LL+H
Sbjct:   32 AEQLDVEAYAGQYSGRTRLARLIFVAERCGVEAMQLEALRMAYDEI--KRREDVQLHRDVAHKINGRLGPRYGLDQAWVDNVSRRAEQRKEKLENELNGYRTNLIKESIRMGYNDIGDFFYAHGQLSDAFKSYIRTRDYCTTSKHIVQMCMNVILVSIELGQFAHVSNYVSKAEQTPDLLDPIIVAKLRAAAGLANLETKKYKLAARKFVE---TGIELGN-------NYSEVIAPQDVAVYGALCALASFDRSDLKSKVIDNINFRNFLELVPEVRELVNDFYASRYGSCLGHLEKLKPNLLLDIHLHEHVETLYTDIRHKAIIQYTLPFISVDLNTMATAFKTSVSMLEKELAALITENKIQARIDSHNKILYARHADQRNTTFQRVLQTGNEFERDVKSMLLRANLLKH 431          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|672159518|ref|XP_008799523.1| (PREDICTED: COP9 signalosome complex subunit 1 [Phoenix dactylifera])

HSP 1 Score: 413.69 bits (1062), Expect = 6.538e-137
Identity = 206/409 (50.37%), Postives = 275/409 (67.24%), Query Frame = 0
Query:   54 FDIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 460
             D++ YA+ Y G TK+ RLLFIA  C  +  +L+A RLA D + +    + QLYR+    +AGRLGP Y+LD  WA+ ID+RA  +K++LE++L   +T + KESIR+GY DLG+F+YA G L +A KN+VRTRDYC+ ++H ++MCLNVI VS+ L  F HVS YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ GP              ++A V+AP+DVATYGGLCAL+S DR ELK  +++N  F+  L+LVP VRELI+DF  SRY +CL  L  LKP LLLD+HLH HVE+LY +IR + ++QY  P++SVDL +MA+ F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R+ RAML R +L++H
Sbjct:   40 MDVEAYASLYTGRTKVTRLLFIADRCGNEGMQLEALRLAYDEIKKGE--DSQLYREAASKIAGRLGPQYTLDQAWADSIDRRAEQRKDKLENELSGYKTNLIKESIRMGYNDLGDFYYAHGQLGDAFKNYVRTRDYCTTSKHIIQMCLNVILVSIELGQFMHVSNYVSKAEQTPDTLDPVTVAKLRCAAGLAYLEAKKYKLAARKFLETGPE----------LGNNYAEVIAPQDVATYGGLCALSSFDRTELKNKVIDNINFRNFLELVPEVRELIHDFYASRYASCLEYLENLKPNLLLDIHLHDHVETLYTQIRHKAIIQYTHPFISVDLHTMADAFKTGVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGVEFERDARAMLLRANLIKH 436          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|747044958|ref|XP_011091695.1| (COP9 signalosome complex subunit 1 [Sesamum indicum] >gi|747044960|ref|XP_011091700.1| COP9 signalosome complex subunit 1 [Sesamum indicum])

HSP 1 Score: 413.305 bits (1061), Expect = 7.772e-137
Identity = 210/446 (47.09%), Postives = 285/446 (63.90%), Query Frame = 0
Query:   23 AGGGAKDDTSNLTGANAESGSGANDDIDAPNFDIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEHSVFVEA 466
            AG   +DD   + G  A         I     DI+ YAA Y G TK+ RLLFIA+ C   S +L+A R+A D + +    N QL+R+V+G + GRLGP Y  D  WA+ +D+RA ++KE+LE++L   RT + KESIR+GY D G+F+YA G L  A KN+VRTRDYC+ ++H + MCLN I VS+ +  F HV++YV KAE +    DP    KL+ AAGLA L    Y  AARKFL+ GP         + G  ++  V+AP+DVATYG LCALAS DR ELK  +++N  F+  L+LVP +RELI DF  S Y +CL  L  LK  LLLD+HLH HVE+LY++IR + L+QY +P++SVDL  MAN F+T +  LEKE+  LI  +++ ARIDS  K L+ R  D R   +++V   G EF RE+RAML R +L++H   ++A
Sbjct:    8 AGTIIEDDDIYVNGGEAGESQRHRPIISGEQLDIEAYAALYTGRTKISRLLFIAEKCGVPSMQLEALRMAYDEIKKGE--NTQLFREVIGKIDGRLGPDYGPDNAWADAVDRRAELRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGQLGEAFKNYVRTRDYCTTSKHIIHMCLNAILVSIEMGQFQHVASYVGKAEQSQDALDPVTIAKLRCAAGLAHLEGKKYKLAARKFLETGP---------ELGN-NYTEVIAPQDVATYGSLCALASFDRAELKSKVIDNINFRNFLELVPEIRELINDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYEQIRSKALIQYTLPFVSVDLHMMANAFNTSVTGLEKELEALITNDQIQARIDSHNKILYARHADQRNGTFQRVLQTGSEFDREVRAMLLRANLIKHDYNLKA 441          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|719998787|ref|XP_010255512.1| (PREDICTED: COP9 signalosome complex subunit 1 [Nelumbo nucifera])

HSP 1 Score: 412.149 bits (1058), Expect = 1.691e-136
Identity = 204/414 (49.28%), Postives = 279/414 (67.39%), Query Frame = 0
Query:   49 IDAPNFDIDTYAARYAGYTKLRRLLFIAQHC--KSRELDAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 460
            I +   D++ YA+ Y+G TK+ RLLFIA  C  +S +L+A R+A D + +    N QL+R+V+  + GRLGPAY +D  WA+ +D+RA  +KE+LE++L + RT + KESIR+GY D G+F+YA G L +A KN+VRTRDYC+ ++H ++MCLN I VS+ +  F HV++YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ GP         + G  ++  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  S Y +CL  L  LK  LLLD+HL+ HVE+LY +IR + L+QY  P++SVDL  MA+ F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R++RAML R +LL+H
Sbjct:   29 ISSEQMDVEAYASLYSGRTKITRLLFIADQCGNQSMQLEALRMAYDEIKKGE--NTQLFREVVQKIDGRLGPAYRMDQAWADNVDRRAEQRKEKLENELNSYRTNLIKESIRMGYNDFGDFYYAHGALGDAFKNYVRTRDYCTTSKHIIQMCLNAILVSIEMGQFTHVNSYVSKAEQTPDALDPVTVAKLRCAAGLAHLDGKKYKLAARKFLETGP---------ELGN-NYTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLEYLENLKANLLLDIHLYDHVETLYNQIRHKALIQYTHPFVSVDLRMMASAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEFDRDVRAMLLRANLLKH 430          
BLAST of EWM28121.1 vs. NCBI_GenBank
Match: gi|225453732|ref|XP_002272895.1| (PREDICTED: COP9 signalosome complex subunit 1 [Vitis vinifera] >gi|296089065|emb|CBI38768.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 412.149 bits (1058), Expect = 2.035e-136
Identity = 206/414 (49.76%), Postives = 274/414 (66.18%), Query Frame = 0
Query:   49 IDAPNFDIDTYAARYAGYTKLRRLLFIAQHCKSREL--DAYRLALDALTQPRSLNIQLYRKVMGLVAGRLGPAYSLDATWAEEIDKRAAMQKERLESDLQTSRTGMAKESIRLGYQDLGEFHYARGDLDNALKNFVRTRDYCSIARHNVEMCLNVIKVSVGLDSFAHVSTYVSKAEHATGMNDPKVRHKLKAAAGLAQLSQHNYDSAARKFLDCGPSGLTRGTPQDPGPASFAHVLAPEDVATYGGLCALASLDRPELKRSLLENTTFKGLLDLVPMVRELIYDFCRSRYGACLGALAALKPELLLDVHLHRHVESLYQRIRERCLLQYFIPYLSVDLGSMANTFDTPLPRLEKEIAGLIVTNRMPARIDSQRKTLHRRQVDPREAGYKKVFSMGQEFLREMRAMLFRMSLLEH 460
            I     DI+ YA+ Y+G TK+ RLLFIA  C++R++  +AYR+A D + +    N QLYR+V+  + GRLGP Y LD  W E +++RA  +KE+LE++L   RT + KESIR+GY D G+F+YA G L +A KN+VRTRDYC+ ++H + MCLN I VS+ +  F HV++YVSKAE      DP    KL+ AAGLA L    Y  AARKFL+ G          + G  ++  V+AP+DVATYGGLCALAS DR ELK  +++N  F+  L+LVP VRELI+DF  S Y +CL  L  LK  LLLD+HLH HVE LY +IR + L+QY  P++SVDL  MAN F T +  LEKE+  LI  N++ ARIDS  K L+ R  D R A +++V   G EF R++RAML R +LL+H
Sbjct:   30 ISGEALDIEAYASLYSGRTKITRLLFIADRCENRQMQMEAYRMAYDEIKKGE--NTQLYREVVQKIDGRLGPQYGLDLVWTESVERRADQRKEKLENELNAYRTNLIKESIRMGYNDFGDFYYAHGLLADAFKNYVRTRDYCTTSKHIIHMCLNAILVSIEMGQFTHVTSYVSKAEQTPEALDPVTVAKLRCAAGLAHLEAKKYKLAARKFLETGA---------ELGN-NYTEVIAPQDVATYGGLCALASFDRTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLDYLGNLKTNLLLDIHLHDHVEMLYNQIRHKALIQYTHPFVSVDLRMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQTGNEFDRDVRAMLLRANLLKH 431          
The following BLAST results are available for this feature:
BLAST of EWM28121.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110465|gb|EWM28121.1|0.000e+0100.00fusca protein fus6 [Nannochloropsis gaditana][more]
gi|585110466|gb|EWM28122.1|0.000e+0100.00fusca protein fus6 [Nannochloropsis gaditana][more]
gi|168011167|ref|XP_001758275.1|1.196e-13850.86predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026756136|gb|OAE18628.1|1.866e-13850.12hypothetical protein AXG93_1923s1850 [Marchantia p... [more]
gi|848886862|ref|XP_012843671.1|4.376e-13746.85PREDICTED: COP9 signalosome complex subunit 1 [Ery... [more]
gi|1070964966|gb|OEL29857.1|4.459e-13748.06COP9 signalosome complex subunit 1 [Dichanthelium ... [more]
gi|672159518|ref|XP_008799523.1|6.538e-13750.37PREDICTED: COP9 signalosome complex subunit 1 [Pho... [more]
gi|747044958|ref|XP_011091695.1|7.772e-13747.09COP9 signalosome complex subunit 1 [Sesamum indicu... [more]
gi|719998787|ref|XP_010255512.1|1.691e-13649.28PREDICTED: COP9 signalosome complex subunit 1 [Nel... [more]
gi|225453732|ref|XP_002272895.1|2.035e-13649.76PREDICTED: COP9 signalosome complex subunit 1 [Vit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2545rna2545Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications