EWM28194.1, cds2520 (CDS) Nannochloropsis gaditana

Overview
NameEWM28194.1
Unique Namecds2520
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:592496..592783 +
Alignment locationCM002459.1:592934..593680 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28194.1
ProductDerlin
Orig transcript idgnl|cribi|Naga_100004g172.9125.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:592496..592783 +
CM002459.1supercontigCM002459.1:592934..593680 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0042221response to chemical
GO:0007165signal transduction
GO:0009056catabolic process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR007599DER1
Homology
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|585110539|gb|EWM28194.1| (Derlin [Nannochloropsis gaditana])

HSP 1 Score: 705.286 bits (1819), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MMGYSFIYVKTDSAMRPQRRPARFGVSESHQKQPLIAHFLAGFAFRNLPTVGMFQQQDDEGQPEQPPGPPQQPNNLEQQQHHAPPPPPPAAEMGPWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVREGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPAVAPGREPHPHQD 344
            MMGYSFIYVKTDSAMRPQRRPARFGVSESHQKQPLIAHFLAGFAFRNLPTVGMFQQQDDEGQPEQPPGPPQQPNNLEQQQHHAPPPPPPAAEMGPWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVREGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPAVAPGREPHPHQD
Sbjct:    1 MMGYSFIYVKTDSAMRPQRRPARFGVSESHQKQPLIAHFLAGFAFRNLPTVGMFQQQDDEGQPEQPPGPPQQPNNLEQQQHHAPPPPPPAAEMGPWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVREGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPAVAPGREPHPHQD 344          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|669171387|ref|XP_008621042.1| (hypothetical protein SDRG_16604 [Saprolegnia diclina VS20] >gi|530727279|gb|EQC25521.1| hypothetical protein SDRG_16604 [Saprolegnia diclina VS20])

HSP 1 Score: 310.842 bits (795), Expect = 1.224e-102
Identity = 151/212 (71.23%), Postives = 176/212 (83.02%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLV-REGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCG 305
            P  WY E+PV+SR+YLT + LTTAACAL+LISPF LYFN +L+   GQVWRL TNFL+FG  SLDFLFHMYFLVRY R+LEEG+FRGRTADFL+MI  GA+ +  +APFV  S+ FLGSSLTFMMVY+WGRRNEH RL+FL LFPFTAPYLPWVLL FSMVLGN ATID+IGIVVGH YYF E V+P +A+ RGW +RR+L TPA + +LC 
Sbjct:    4 PLEWYYEIPVISRLYLTGAFLTTAACALELISPFSLYFNFNLIFYRGQVWRLLTNFLFFGLFSLDFLFHMYFLVRYSRMLEEGSFRGRTADFLYMILFGAAFMILVAPFV--SVHFLGSSLTFMMVYIWGRRNEHTRLSFLGLFPFTAPYLPWVLLLFSMVLGNSATIDLIGIVVGHIYYFFEDVYPTIADIRGWRVRRVLKTPAFVKFLCN 213          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|813126293|ref|XP_012196981.1| (hypothetical protein SPRG_03010 [Saprolegnia parasitica CBS 223.65] >gi|641538704|gb|KDO32535.1| hypothetical protein SPRG_03010 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 310.842 bits (795), Expect = 1.308e-102
Identity = 151/212 (71.23%), Postives = 176/212 (83.02%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLV-REGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCG 305
            P  WY E+PV+SR+YLT + LTTAACAL+LISPF LYFN +L+   GQVWRL TNFL+FG  SLDFLFHMYFLVRY R+LEEG+FRGRTADFL+MI  GA+ +  +APFV  S+ FLGSSLTFMMVY+WGRRNEH RL+FL LFPFTAPYLPWVLL FSMVLGN ATID+IGIVVGH YYF E V+P +A+ RGW +RR+L TPA + +LC 
Sbjct:    4 PLEWYYEIPVISRLYLTGAFLTTAACALELISPFSLYFNFNLIFYRGQVWRLLTNFLFFGLFSLDFLFHMYFLVRYSRMLEEGSFRGRTADFLYMILFGAAFMILVAPFV--SVHFLGSSLTFMMVYIWGRRNEHTRLSFLGLFPFTAPYLPWVLLLFSMVLGNSATIDLIGIVVGHIYYFFEDVYPAIADIRGWRVRRVLKTPAFVKFLCN 213          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|698816176|ref|XP_009841117.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574103722|gb|ETV69260.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 308.531 bits (789), Expect = 1.003e-101
Identity = 159/254 (62.60%), Postives = 186/254 (73.23%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLV-REGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPA---VAPGREPHPHQD 344
            P  WY E+P++SR+YLT + LTT ACAL+LISPF LYFN +L+   GQVWRL TNFL+FG  SLDF+FHMYFLVRY R+LEEG+FRGRTADFL+M+ LGA  +  +APFV  S+ FLGSSLTFMMVYVWGRRNEH RL+FL LFPFTAPYLPWVLL FSMVLGN ATID+IGIVVGH YYF E V+P +A+ RGW +RR+L TP  + +LC                H    AAA +     VA   E HPH D
Sbjct:    4 PLEWYYEIPIISRLYLTGAFLTTVACALELISPFSLYFNFNLIFYRGQVWRLVTNFLFFGLFSLDFIFHMYFLVRYSRMLEEGSFRGRTADFLYMLLLGALTMILVAPFV--SVHFLGSSLTFMMVYVWGRRNEHTRLSFLGLFPFTAPYLPWVLLLFSMVLGNSATIDLIGIVVGHIYYFFEDVYPAIADIRGWRVRRILETPTFVKFLCN--------------PHAFTAAAAPIVNDIPVAEHAEFHPHAD 241          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|673041407|ref|XP_008874664.1| (hypothetical protein H310_10163 [Aphanomyces invadans] >gi|574469874|gb|ETV96887.1| hypothetical protein H310_10163 [Aphanomyces invadans])

HSP 1 Score: 307.76 bits (787), Expect = 2.180e-101
Identity = 156/251 (62.15%), Postives = 185/251 (73.71%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLV-REGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPAVAPGREPHPHQD 344
            P  WY E+PV+SR+YLT + LTT ACAL+LISPF LYFN +L+   GQVWRL TNFL+FG  SLD++FHMYFLVRY R+LEEG+FRGRTADFL+M+ LGA  +  +APFV  S+ FLGSSLTFMMVYVWGRRNEH RL+FL LFPFTAPYLPWVLL FSMVLGN ATID+IGIVVGH YYF E V+P +A+ RGW +RR+L TP  + +LC  + +  A           A     +P      E HPH D
Sbjct:    4 PLEWYHEIPVISRLYLTGAFLTTVACALELISPFSLYFNFNLIFYRGQVWRLVTNFLFFGLFSLDYIFHMYFLVRYSRMLEEGSFRGRTADFLYMLLLGAVSMILVAPFV--SVHFLGSSLTFMMVYVWGRRNEHTRLSFLGLFPFTAPYLPWVLLLFSMVLGNSATIDLIGIVVGHVYYFFEDVYPAIADIRGWRVRRILETPTFVKFLCNPHAYTAAA----------APIVNDIPVADHPAEFHPHAD 242          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|224003931|ref|XP_002291637.1| (hypothetical protein THAPSDRAFT_6534 [Thalassiosira pseudonana CCMP1335] >gi|220973413|gb|EED91744.1| hypothetical protein THAPSDRAFT_6534 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 305.449 bits (781), Expect = 7.216e-101
Identity = 143/220 (65.00%), Postives = 178/220 (80.91%), Query Frame = 0
Query:   98 WYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVR-EGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYH-----HED 311
            WYME+P++SR+Y T + LTTA CALD+ISPF LYFN  L+  +GQ+WRL T +L+FG  S+DFLFHMYFLVRYCR+LEEG FRG+TA+F+ MI  G   +T +APFV  S+ FLGSSLTFMMVYVWGRRNE +R++FL +F F APYLPWV+LTFSM+LGNP TID IGI+VGHTYYFLE+V+PV+AE RGW  +R++  P LLH++CGTY      H+D
Sbjct:    3 WYMEIPIISRLYFTGAFLTTAGCALDIISPFSLYFNFDLIFFQGQIWRLITTYLFFGMFSIDFLFHMYFLVRYCRMLEEGDFRGKTANFVMMIMFGVIFMTAVAPFV--SVHFLGSSLTFMMVYVWGRRNEDMRMSFLGVFTFNAPYLPWVMLTFSMLLGNPVTIDAIGILVGHTYYFLEYVYPVLAEIRGWRRKRIMEPPRLLHWICGTYQEPAHLHQD 220          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|695405528|ref|XP_009523839.1| (hypothetical protein PHYSODRAFT_490756 [Phytophthora sojae] >gi|348681306|gb|EGZ21122.1| hypothetical protein PHYSODRAFT_490756 [Phytophthora sojae])

HSP 1 Score: 303.138 bits (775), Expect = 1.126e-99
Identity = 152/253 (60.08%), Postives = 185/253 (73.12%), Query Frame = 0
Query:   93 MGPWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVR-EGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYHHEDAVQVDFAPAHQLADAAARLPAVAPGREPHPHQD 344
            + P  WY E+PVVSR+YLT S LTT ACALDL+SPF LYFN +L+  +GQVWRL TNF++FG  SLDFLFHMYF+VRYCRLLEEG+FRGRTADF++M+ LGA ++  +APFV  +I FLGSSLTFMMVY+WGRRNEHVR++FL LFPFTAPYLPWVL +FS++LGN AT D+IGI+VGH YYFLE V+P +A  RGW  +R L TP ++ YL             F P   + D    +         HPH D
Sbjct:    2 IDPLEWYYEIPVVSRLYLTGSFLTTTACALDLVSPFSLYFNFNLIFFKGQVWRLVTNFMFFGLFSLDFLFHMYFVVRYCRLLEEGSFRGRTADFVYMLLLGAVVMILVAPFV--NIHFLGSSLTFMMVYLWGRRNEHVRMSFLGLFPFTAPYLPWVLFSFSILLGNSATTDLIGIIVGHIYYFLEDVYPTIASIRGWKTQRPLATPRIIRYL-------------FDPRPVVVDGEQVINDFGAEGNDHPHMD 239          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|953495871|emb|CEG42767.1| (Predicted membrane protein [Plasmopara halstedii])

HSP 1 Score: 303.138 bits (775), Expect = 1.487e-99
Identity = 152/242 (62.81%), Postives = 184/242 (76.03%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVR-EGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCG---TYHHEDAVQVDFAPAHQLADAAARLPA 332
            P  WY E+P+VSR+YLT S LTT ACALDL+SPF LYFN +L+  +GQVWRL TNFL+FG  SLDFLFHMYF+VRYCRLLEEG+FRGRTADF++M+ LGA+ +  +APFV  +I FLGSSLTFMMVY+WGRRNEHVR++FL LFPFTAPYLPWVL +FS++LGN AT D+IGI+VGH YYFLE V+P +A  RGW  RR L TP  + YL        + + +  DF  A     A  RL +
Sbjct:    4 PLEWYYEIPIVSRLYLTGSFLTTTACALDLVSPFSLYFNFNLIFFKGQVWRLVTNFLFFGLFSLDFLFHMYFVVRYCRLLEEGSFRGRTADFIYMLLLGAAFMILVAPFV--NIHFLGSSLTFMMVYLWGRRNEHVRMSFLGLFPFTAPYLPWVLFSFSILLGNSATTDLIGIIVGHIYYFLEDVYPTIASIRGWKTRRPLATPRFIRYLIDPRPVAVNNEPILNDFGGAEHHLHADVRLQS 243          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|397575888|gb|EJK49946.1| (hypothetical protein THAOC_31124 [Thalassiosira oceanica])

HSP 1 Score: 300.442 bits (768), Expect = 1.089e-98
Identity = 142/216 (65.74%), Postives = 173/216 (80.09%), Query Frame = 0
Query:   98 WYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVR-EGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYLCGTYH-HED 311
            WYM +PVVSR+Y T + LTTA CALD+ISPF LYFN  L+  +GQ+WRL T +L+FG  S+DF+FHMYFLVRYCR+LEEG FRGRTA F+ MI  G   +T +APFV  S+ FLGSSLTFMM YVWGRRNE +R+ FL +F F APYLPWV+LTFS++LGN  TID IGI+VGHTYYFLE+V+P VAE RGW  +R+L  P +LH++CGTYH H+D
Sbjct:   19 WYMGIPVVSRLYFTGAFLTTAGCALDIISPFSLYFNWDLIFFQGQIWRLLTTYLFFGMFSIDFMFHMYFLVRYCRMLEEGDFRGRTAHFVMMIMFGVIFMTAVAPFV--SVHFLGSSLTFMMTYVWGRRNEDMRMAFLGIFTFNAPYLPWVMLTFSLLLGNSITIDAIGILVGHTYYFLEYVYPKVAEIRGWKRKRILEPPRILHWICGTYHEHQD 232          
BLAST of EWM28194.1 vs. NCBI_GenBank
Match: gi|301121464|ref|XP_002908459.1| (Der1-like family, putative [Phytophthora infestans T30-4] >gi|262103490|gb|EEY61542.1| Der1-like family, putative [Phytophthora infestans T30-4])

HSP 1 Score: 299.286 bits (765), Expect = 3.989e-98
Identity = 145/210 (69.05%), Postives = 174/210 (82.86%), Query Frame = 0
Query:   95 PWVWYMEMPVVSRMYLTASVLTTAACALDLISPFHLYFNLSLVR-EGQVWRLFTNFLYFGNLSLDFLFHMYFLVRYCRLLEEGTFRGRTADFLFMIFLGASMITCIAPFVRPSIPFLGSSLTFMMVYVWGRRNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGNPATIDVIGIVVGHTYYFLEFVFPVVAEARGWPLRRLLHTPALLHYL 303
            P  WY E+PVVSR+YLT S LTT ACALDL+SPF LYFN +L+  +GQVWRL TNF++FG  SLDFLFHMYF+VRYCRLLEEG+FRGRTADF++M+ LGA  +  +APFV  +I FLGSSLTFMMVY+WGRRNEHVR++FL LFPFTAPYLPWVL +FS++LGN AT D+IGI+VGH YYFLE V+P +A  RGW  +R L TP ++ YL
Sbjct:    4 PLEWYYEIPVVSRLYLTGSFLTTTACALDLVSPFSLYFNFNLIFFKGQVWRLLTNFMFFGLFSLDFLFHMYFVVRYCRLLEEGSFRGRTADFVYMLLLGAVFMILVAPFV--NIHFLGSSLTFMMVYLWGRRNEHVRMSFLGLFPFTAPYLPWVLFSFSILLGNSATTDLIGIIVGHIYYFLEDVYPTIASIRGWKTQRPLATPRIIRYL 211          
The following BLAST results are available for this feature:
BLAST of EWM28194.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110539|gb|EWM28194.1|0.000e+0100.00Derlin [Nannochloropsis gaditana][more]
gi|669171387|ref|XP_008621042.1|1.224e-10271.23hypothetical protein SDRG_16604 [Saprolegnia dicli... [more]
gi|813126293|ref|XP_012196981.1|1.308e-10271.23hypothetical protein SPRG_03010 [Saprolegnia paras... [more]
gi|698816176|ref|XP_009841117.1|1.003e-10162.60hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|673041407|ref|XP_008874664.1|2.180e-10162.15hypothetical protein H310_10163 [Aphanomyces invad... [more]
gi|224003931|ref|XP_002291637.1|7.216e-10165.00hypothetical protein THAPSDRAFT_6534 [Thalassiosir... [more]
gi|695405528|ref|XP_009523839.1|1.126e-9960.08hypothetical protein PHYSODRAFT_490756 [Phytophtho... [more]
gi|953495871|emb|CEG42767.1|1.487e-9962.81Predicted membrane protein [Plasmopara halstedii][more]
gi|397575888|gb|EJK49946.1|1.089e-9865.74hypothetical protein THAOC_31124 [Thalassiosira oc... [more]
gi|301121464|ref|XP_002908459.1|3.989e-9869.05Der1-like family, putative [Phytophthora infestans... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2528rna2528Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications