EWM30421.1, cds252 (CDS) Nannochloropsis gaditana

Overview
NameEWM30421.1
Unique Namecds252
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:634824..635885 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30421.1
Producttim21-like mitochondrial-like protein
Orig transcript idgnl|cribi|Naga_100210g12.8069.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:634824..635885 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0030150protein import into mitochondrial matrix
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
Vocabulary: INTERPRO
TermDefinition
IPR013261Tim21
Homology
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|585113082|gb|EWM30421.1| (tim21-like mitochondrial-like protein [Nannochloropsis gaditana])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 353/353 (100.00%), Postives = 353/353 (100.00%), Query Frame = 0
Query:    1 MTGVLYFLFPYWKMNKEAPALLPWMLTPPFLLKYRISDTSAMTSLVTVMSKAAGPCTRRVLPMSVGGTGRRPLTSRARPCLNYAADTMRGTLVSRRLLVRHEPSSLVGRLLGARGNGCARRSGVWLGPDGRGGHSLQLVCKASLSSKKGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQR 353
            MTGVLYFLFPYWKMNKEAPALLPWMLTPPFLLKYRISDTSAMTSLVTVMSKAAGPCTRRVLPMSVGGTGRRPLTSRARPCLNYAADTMRGTLVSRRLLVRHEPSSLVGRLLGARGNGCARRSGVWLGPDGRGGHSLQLVCKASLSSKKGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQR
Sbjct:    1 MTGVLYFLFPYWKMNKEAPALLPWMLTPPFLLKYRISDTSAMTSLVTVMSKAAGPCTRRVLPMSVGGTGRRPLTSRARPCLNYAADTMRGTLVSRRLLVRHEPSSLVGRLLGARGNGCARRSGVWLGPDGRGGHSLQLVCKASLSSKKGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQR 353          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|1210531626|dbj|GAX09982.1| (hypothetical protein FisN_11Lh026 [Fistulifera solaris])

HSP 1 Score: 167.548 bits (423), Expect = 2.226e-46
Identity = 82/167 (49.10%), Postives = 117/167 (70.06%), Query Frame = 0
Query:  183 GEKIGFMRGLA-YLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNR-AMYEAMSKSASPEERAALQALI 346
            GEK+     L  YL +A+ AA   Y+I  EL+P++MS N +F+ +F++++ + E++ +YGE +K YGRD GG REGRRNFVEH  YV  +DGSKR R+R+N+EG FG+AF FAEV+  MP G+++Y+LVQD   GRV T+ DNR AM  A   + S E ++A+  L+
Sbjct:   76 GEKVVAATRLGWYLGLASFAAACAYYIGKELIPTKMSPNRVFDRSFEIIRKHPEIIRQYGESVKAYGRDHGGHREGRRNFVEHTEYVSPDDGSKRTRVRYNLEGRFGNAFCFAEVSNQMPSGEFVYILVQDKSNGRVQTIVDNRAAMTAARLTAGSKEAQSAMSQLL 242          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|1210526863|dbj|GAX14511.1| (hypothetical protein FisN_11Hh026 [Fistulifera solaris])

HSP 1 Score: 165.622 bits (418), Expect = 9.058e-46
Identity = 78/155 (50.32%), Postives = 112/155 (72.26%), Query Frame = 0
Query:  194 YLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNR-AMYEAMSKSASPEERAALQALI 346
            YL +A+ AA   Y+I  EL+P++MS N +F+ +F++++ + E++ +YGE +K YGRD GG REGRRNFVEH  YV  +DGSKR R+R+N+EG FG+AF FAEV+  MP G+++Y+LVQD   GRV T+ DNR AM  A   + S E ++A+  L+
Sbjct:   87 YLGLASFAAACAYYIGKELIPTKMSPNRVFDRSFEIIRKDPEIIRQYGESVKAYGRDHGGHREGRRNFVEHTEYVSPDDGSKRTRVRYNLEGRFGNAFYFAEVSNQMPSGEFVYILVQDKSNGRVQTIVDNRAAMTAARLTAGSKEAQSAMSQLL 241          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|299470181|emb|CBN78209.1| (Mitochondrial import inner membrane translocase TIM21-like protein [Ectocarpus siliculosus])

HSP 1 Score: 161.384 bits (407), Expect = 1.527e-44
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 0
Query:  177 DDPPEEGEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGE-DGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALI 346
            D  PE  EKI  ++ +A + V  +   +L   + EL PS M+   + + A DV +A+ +  N +G PLKGYGRD    REGRRNFVEH ++    D SKR R+RFN+EGP GH   +AEV+  M  G+W+YL VQD+QTG V+TL DNRA+  A +++ S EE+ A + ++
Sbjct:   33 DYEPEPEEKISIVKTVAGVCVLGLVVAALSATITELWPSHMAPQSIMSHAHDVFQADPDTANHFGTPLKGYGRDNNRHREGRRNFVEHVDHEDPIDKSKRTRVRFNVEGPHGHGMAYAEVSNKMESGEWVYLCVQDLQTGHVITLHDNRALLMAQAQAGSDEEKNAFRKML 203          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|219109654|ref|XP_002176581.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411116|gb|EEC51044.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 161.77 bits (408), Expect = 2.721e-44
Identity = 88/191 (46.07%), Postives = 122/191 (63.87%), Query Frame = 0
Query:  165 EKQKQQEEEPIHDDPPEEGEKIGFMRGLA-YLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYV-GEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDN-RAMYEAMSKSASPEERAALQALIQSGGSQ 352
            EK+K + E+   +     G+K+     L  +  +A  AA   Y+I  EL P++MS N +F+ +F  ++A+ EV  RYG+ LK YGRD GG REGRRNF+EH  Y   EDGSKR R+R+N+EG FG AFVFAEV+A MP G+++Y+LVQD   GRV T+ DN  A+  A   S S E ++A+  L+  GG +
Sbjct:   55 EKKKSEGEDTTSEIVLTPGQKVVEASRLTMWGGIAVFAACCAYYIGRELFPTKMSPNRVFDRSFAAIRADSEVQRRYGDNLKAYGRDHGGHREGRRNFIEHTEYTDAEDGSKRTRVRYNLEGRFGTAFVFAEVSASMPSGEFVYILVQDKSNGRVHTVVDNRAALTAARLASGSKEAQSAMSQLLGGGGQK 245          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|223999159|ref|XP_002289252.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974460|gb|EED92789.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 159.073 bits (401), Expect = 1.191e-42
Identity = 74/148 (50.00%), Postives = 106/148 (71.62%), Query Frame = 0
Query:  206 YFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVG-EDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALIQSGGSQ 352
            Y+I  EL+P++MS N +F++A  +++ N EV  R+GE  K YGRD GG REGRRNF+EH  YV  +DG+KR R+RFN+EG +G+AFVFAEV+ DMP G+++YLLVQD + G+V+T+ DNR+   A   +   +E A + A +  GG +
Sbjct:  149 YYIGKELIPTKMSPNNVFDKATSIIRENAEVKRRFGEAFKTYGRDHGGHREGRRNFIEHTEYVSPDDGTKRTRVRFNLEGQYGNAFVFAEVSKDMPSGEFVYLLVQDKRNGQVITVVDNRSALLAKRMAGGSQEGADVFANLLGGGKK 296          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|397623111|gb|EJK66897.1| (hypothetical protein THAOC_12135 [Thalassiosira oceanica])

HSP 1 Score: 153.295 bits (386), Expect = 5.655e-41
Identity = 66/120 (55.00%), Postives = 89/120 (74.17%), Query Frame = 0
Query:  206 YFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRA 325
            Y+I  EL+P++MS N  F+ A   ++ N EV  R+GE  K YGRD GG REGRRNF+EH  Y  EDG+KR R+RFN+EG +G AFVFAEV+ +M  G+++Y+LVQD + G V+T++DNRA
Sbjct:  101 YYIGKELLPTKMSPNTTFDRATSAIRQNEEVKRRFGEGFKTYGRDHGGHREGRRNFIEHTEYTAEDGTKRTRVRFNLEGQYGSAFVFAEVSNEMASGEFVYILVQDKRNGAVITVQDNRA 220          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|301094038|ref|XP_002997863.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262109786|gb|EEY67838.1| transmembrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-39
Identity = 71/153 (46.41%), Postives = 104/153 (67.97%), Query Frame = 0
Query:  194 YLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALI 346
            +L +  + A  +YF+  EL+P+RMS N LF+E+ D +  N +V +R G P+ GYG D GG REGRRN +EH N   +DG+ RLRI++NI+GP GHA+VFAEV   M K +++YL+VQ  +TG ++ + DNR +  A +K    EE+ AL+ L+
Sbjct:   79 WLGLIGLGAVGVYFVARELLPNRMSPNGLFSESLDFLSENTDVTSRLGLPIHGYGYDHGGHREGRRNRIEHVNLQAKDGTPRLRIKYNIKGPSGHAYVFAEVNKGMKKNEYVYLIVQVTKTGELLKIIDNRQILSAETK----EEQDALRQLL 227          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|1072236581|gb|OEU21309.1| (hypothetical protein FRACYDRAFT_206320 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 148.288 bits (373), Expect = 7.000e-39
Identity = 85/220 (38.64%), Postives = 128/220 (58.18%), Query Frame = 0
Query:  131 RGGHSLQLVCKASLSSKKGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEEGEKIGFMRGLA-YLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEP-LKGYGRDGGGRREGRRNFVEHKNYVGE-DGSKRLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERA-ALQALI 346
            R  H+L     + LSS  G        +E  T++       +    +     GEK+     L  +  + A A+   Y+I  EL+P++MS N +F++A   ++ N +V  +YG+  +K YG+D GG REGRRNF+EH  Y  E DGSKR R+RFN+EG F  AF FAEV+ +M  G+++Y+LVQD ++GRV+T+ DNRA   A   S + +E A A++ L+
Sbjct:   32 RQNHNLSKQILSPLSSTIGLRSLSNKAKEETTKKNNDTADADTETSELVLTPGEKVAAASRLTMWAGIFAFASVCAYYIGKELIPTKMSPNTVFSKACKTIRDNSQVKLKYGDSSIKFYGKDHGGHREGRRNFIEHTQYNNEEDGSKRTRVRFNMEGQFASAFCFAEVSNEMSSGEFVYILVQDKKSGRVITVVDNRAALTAKRMSGNNQESAEAMKKLL 251          
BLAST of EWM30421.1 vs. NCBI_GenBank
Match: gi|1173956320|gb|OQS03131.1| (transmembrane protein [Thraustotheca clavata])

HSP 1 Score: 142.51 bits (358), Expect = 4.085e-37
Identity = 88/203 (43.35%), Postives = 122/203 (60.10%), Query Frame = 0
Query:  148 KGGPKEGEGREEAETEREKQKQQEEEPIHDDPPEE---GEKIGFMRGLAYLTVAAIAAGSLYFIVDELMPSRMSANYLFNEAFDVVKANHEVLNRYGEPLKGYGRDGGGRREGRRNFVEHKNYVGEDGSK-RLRIRFNIEGPFGHAFVFAEVTADMPKGQWMYLLVQDMQTGRVMTLEDNRAMYEAMSKSASPEERAALQALI 346
            K  P +G  + EA+T+           I   P E+   G ++G   G+  L +A +     YFIV EL PSRMS N LF+EA D+V  N  VL R G P++ YGRD GG +EGRRNF+EH     +DG K RLRI+FN++GP G A  +AE  A+M KG+++YL+VQ   TG ++ + DNR + +A S+    EER AL+ L+
Sbjct:   43 KPNPAQGGAQAEAQTD----------AIVLTPYEKVAAGTQMGMWAGI--LGLATVCG---YFIVRELFPSRMSPNSLFSEASDIVLQNDMVLQRLGAPIRCYGRDHGGHKEGRRNFIEHVELNDKDGQKTRLRIKFNMKGPNGKAQCWAETNANMKKGEYVYLIVQTY-TGEIIKIHDNRQILQAESE----EERDALKRLL 225          
The following BLAST results are available for this feature:
BLAST of EWM30421.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113082|gb|EWM30421.1|0.000e+0100.00tim21-like mitochondrial-like protein [Nannochloro... [more]
gi|1210531626|dbj|GAX09982.1|2.226e-4649.10hypothetical protein FisN_11Lh026 [Fistulifera sol... [more]
gi|1210526863|dbj|GAX14511.1|9.058e-4650.32hypothetical protein FisN_11Hh026 [Fistulifera sol... [more]
gi|299470181|emb|CBN78209.1|1.527e-4445.03Mitochondrial import inner membrane translocase TI... [more]
gi|219109654|ref|XP_002176581.1|2.721e-4446.07predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223999159|ref|XP_002289252.1|1.191e-4250.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397623111|gb|EJK66897.1|5.655e-4155.00hypothetical protein THAOC_12135 [Thalassiosira oc... [more]
gi|301094038|ref|XP_002997863.1|3.802e-3946.41transmembrane protein, putative [Phytophthora infe... [more]
gi|1072236581|gb|OEU21309.1|7.000e-3938.64hypothetical protein FRACYDRAFT_206320 [Fragilario... [more]
gi|1173956320|gb|OQS03131.1|4.085e-3743.35transmembrane protein [Thraustotheca clavata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna252rna252Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications