EWM28287.1, cds2509 (CDS) Nannochloropsis gaditana

Overview
NameEWM28287.1
Unique Namecds2509
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:561421..561521 +
Alignment locationCM002459.1:561619..561675 +
Alignment locationCM002459.1:561973..562060 +
Alignment locationCM002459.1:562210..562293 +
Alignment locationCM002459.1:562418..562564 +
Alignment locationCM002459.1:562707..562748 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28287.1
Productferredoxin (2fe-2s)
Orig transcript idgnl|cribi|Naga_100004g160.9218.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:561421..561521 +
CM002459.1supercontigCM002459.1:561619..561675 +
CM002459.1supercontigCM002459.1:561973..562060 +
CM002459.1supercontigCM002459.1:562210..562293 +
CM002459.1supercontigCM002459.1:562418..562564 +
CM002459.1supercontigCM002459.1:562707..562748 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0060582Fe2S_fd_BS
IPR0010412Fe-2S_ferredoxin-type
IPR012675Beta-grasp_dom
Homology
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|585110632|gb|EWM28287.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 359.762 bits (922), Expect = 6.554e-126
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:    1 MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172
            MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG
Sbjct:    1 MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|585110105|gb|EWM27804.1| (phenylacetate- oxygenase subunit [Nannochloropsis gaditana])

HSP 1 Score: 152.525 bits (384), Expect = 7.008e-44
Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    5 ALTLLACFIFSIAQAFVPCVPGL-----RAKNAQRVG--AINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVI-ANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKA--TTEQKSKFNVFG 172
            AL +L C +       VP VP +     RA     VG  A   VP +LEG+LDP + WDV M+  GETK ++VSE T +L+AAE+ + D PC CRNG+CTTCA  V      S   AI  LS EQ ++GF+L+CQT+PCGPGLEV L   + VYESQY +YEKKA    E+K  FN+F 
Sbjct:    7 ALIVLPCIVSGF---LVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|873233470|emb|CEM03311.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 122.094 bits (305), Expect = 1.484e-32
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 0
Query:   41 VPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQ--SKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYE 157
            VP++LEG+LDP+++W +++ Y G+ + + V E T +LEAAE  W D PC CRNG+CT+CAGR++     +   I+  S E+     G+VLTCQT+ CGPGL+VEL   + VY  QYG++E
Sbjct:    6 VPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|298706525|emb|CBJ29495.1| (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 92.0485 bits (227), Expect = 2.345e-20
Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 0
Query:   56 DVKMTYKGETKVLTVSEDTCILEAAE-KEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSK 167
            DVK+T +G  + + + E   IL+  E  + D P SCR+G+CT CA  V AN D+ K     L  E S  GFVLTC +   GPG+E+ELG+ D +YE+QYG+  +     Q++K
Sbjct:   45 DVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAK 157          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|494594747|ref|WP_007353149.1| (MULTISPECIES: ferredoxin [Kamptonema] >gi|300338155|emb|CBN53922.1| ferredoxin (2Fe-2S) [[Oscillatoria] sp. PCC 6506])

HSP 1 Score: 80.1073 bits (196), Expect = 2.674e-16
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 0
Query:   53 KTWDVKMTYK--GETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQY 156
            +++ +K+  +  G+ + + V ED  IL +AE +  D+P SCRNG CTTCA R++A    + EA+ GLS E  K G+ L C ++PC   +EVE    D VYE Q+GQY
Sbjct:    3 RSYSIKIYNRQTGDRRTVQVPEDRYILHSAENQGVDLPFSCRNGACTTCAVRLLAGEVHQPEAM-GLSVELQKQGYALLCVSYPCC-DIEVETQDEDEVYELQFGQY 107          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|935602957|ref|WP_054466915.1| (ferredoxin [Planktothricoides sp. SR001] >gi|923470188|gb|KOR36039.1| ferredoxin [Planktothricoides sp. SR001])

HSP 1 Score: 78.9518 bits (193), Expect = 4.832e-16
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0
Query:   53 KTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQ 155
            KT+ V++ ++GET  LTV+ED  I+E AE     +P SC  G+CTTCAG++I     ++    GLS E  K G+VL C  +P    L++E    D VY+ Q+G+
Sbjct:    3 KTYTVEIHHQGETHTLTVAEDQKIIEVAEASGLHLPNSCNAGVCTTCAGKIIGEGSVEQSEGMGLSPELQKEGYVLLCVAYP-RSDLKIETEKEDEVYDRQFGR 105          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|428247048|gb|AFZ12828.1| (ferredoxin (2Fe-2S) [Crinalium epipsammum PCC 9333])

HSP 1 Score: 78.5666 bits (192), Expect = 8.519e-16
Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 0
Query:   49 LDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKK 159
            L   K + V++ ++G T  L V ED  I+ AA     D+P SC  G+CTTCAGR+I     + E + G+S E  + G+VL C  +P    L++E    D +YE Q+GQ++K+
Sbjct:    8 LSMPKMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 117          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|1049314215|gb|OCQ92456.1| (ferredoxin [Oscillatoriales cyanobacterium USR001])

HSP 1 Score: 78.5666 bits (192), Expect = 9.183e-16
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   52 TKTWDVKMTYK--GETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQY 156
             +++++K+  +  G+ + + V ED  IL +AE +  D+P SCRNG CTTCA R+ A    + EA+ GLS E  K G+ L C ++PC   +EVE    D VYE Q+G+Y
Sbjct:    2 VRSYNIKIYNRQTGDRRTVQVPEDRYILHSAENQGVDLPFSCRNGACTTCAVRLKAGEVHQPEAM-GLSLELQKQGYALLCVSYPCS-DIEVETQDEDEVYELQFGRY 107          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|752555295|ref|WP_041226527.1| (ferredoxin [Crinalium epipsammum])

HSP 1 Score: 78.1814 bits (191), Expect = 1.024e-15
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0
Query:   53 KTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKK 159
            K + V++ ++G T  L V ED  I+ AA     D+P SC  G+CTTCAGR+I     + E + G+S E  + G+VL C  +P    L++E    D +YE Q+GQ++K+
Sbjct:    3 KMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 108          
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|1194462569|gb|OUC16058.1| (ferredoxin [Alkalinema sp. CACIAM 70d])

HSP 1 Score: 78.1814 bits (191), Expect = 1.041e-15
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 0
Query:   55 WDVKMTYKGETKVLTVSEDTCILEAA-EKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEK 158
            + V++ ++G+T V+ V +D  ILE A E   D+P SC  G+CTTCA +V+    ++ + + G+SAE    G+ L C ++PC   L++E    +TVY  Q+GQY+K
Sbjct:    5 YRVEILHQGQTHVIEVPDDRTILEVANEMGLDLPVSCTAGVCTTCAAKVMEGKVNQADNL-GISAELQAEGYALLCVSYPCS-NLKIETEKEETVYHLQFGQYQK 107          
The following BLAST results are available for this feature:
BLAST of EWM28287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110632|gb|EWM28287.1|6.554e-126100.00ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
gi|585110105|gb|EWM27804.1|7.008e-4449.16phenylacetate- oxygenase subunit [Nannochloropsis ... [more]
gi|873233470|emb|CEM03311.1|1.484e-3247.50unnamed protein product [Vitrella brassicaformis C... [more]
gi|298706525|emb|CBJ29495.1|2.345e-2042.48ferredoxin [Ectocarpus siliculosus][more]
gi|494594747|ref|WP_007353149.1|2.674e-1642.99MULTISPECIES: ferredoxin [Kamptonema] >gi|30033815... [more]
gi|935602957|ref|WP_054466915.1|4.832e-1641.35ferredoxin [Planktothricoides sp. SR001] >gi|92347... [more]
gi|428247048|gb|AFZ12828.1|8.519e-1638.39ferredoxin (2Fe-2S) [Crinalium epipsammum PCC 9333... [more]
gi|1049314215|gb|OCQ92456.1|9.183e-1641.67ferredoxin [Oscillatoriales cyanobacterium USR001][more]
gi|752555295|ref|WP_041226527.1|1.024e-1538.89ferredoxin [Crinalium epipsammum][more]
gi|1194462569|gb|OUC16058.1|1.041e-1539.05ferredoxin [Alkalinema sp. CACIAM 70d][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2517rna2517Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications