EWM28287.1, cds2509 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|585110632|gb|EWM28287.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana]) HSP 1 Score: 359.762 bits (922), Expect = 6.554e-126 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0 Query: 1 MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172 MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG Sbjct: 1 MHSLALTLLACFIFSIAQAFVPCVPGLRAKNAQRVGAINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSKFNVFG 172
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|585110105|gb|EWM27804.1| (phenylacetate- oxygenase subunit [Nannochloropsis gaditana]) HSP 1 Score: 152.525 bits (384), Expect = 7.008e-44 Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 5 ALTLLACFIFSIAQAFVPCVPGL-----RAKNAQRVG--AINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVI-ANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKA--TTEQKSKFNVFG 172 AL +L C + VP VP + RA VG A VP +LEG+LDP + WDV M+ GETK ++VSE T +L+AAE+ + D PC CRNG+CTTCA V S AI LS EQ ++GF+L+CQT+PCGPGLEV L + VYESQY +YEKKA E+K FN+F Sbjct: 7 ALIVLPCIVSGF---LVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|873233470|emb|CEM03311.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 122.094 bits (305), Expect = 1.484e-32 Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = 0 Query: 41 VPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQ--SKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYE 157 VP++LEG+LDP+++W +++ Y G+ + + V E T +LEAAE W D PC CRNG+CT+CAGR++ + I+ S E+ G+VLTCQT+ CGPGL+VEL + VY QYG++E Sbjct: 6 VPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|298706525|emb|CBJ29495.1| (ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 92.0485 bits (227), Expect = 2.345e-20 Identity = 48/113 (42.48%), Postives = 68/113 (60.18%), Query Frame = 0 Query: 56 DVKMTYKGETKVLTVSEDTCILEAAE-KEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKATTEQKSK 167 DVK+T +G + + + E IL+ E + D P SCR+G+CT CA V AN D+ K L E S GFVLTC + GPG+E+ELG+ D +YE+QYG+ + Q++K Sbjct: 45 DVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEAAVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAK 157
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|494594747|ref|WP_007353149.1| (MULTISPECIES: ferredoxin [Kamptonema] >gi|300338155|emb|CBN53922.1| ferredoxin (2Fe-2S) [[Oscillatoria] sp. PCC 6506]) HSP 1 Score: 80.1073 bits (196), Expect = 2.674e-16 Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 0 Query: 53 KTWDVKMTYK--GETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQY 156 +++ +K+ + G+ + + V ED IL +AE + D+P SCRNG CTTCA R++A + EA+ GLS E K G+ L C ++PC +EVE D VYE Q+GQY Sbjct: 3 RSYSIKIYNRQTGDRRTVQVPEDRYILHSAENQGVDLPFSCRNGACTTCAVRLLAGEVHQPEAM-GLSVELQKQGYALLCVSYPCC-DIEVETQDEDEVYELQFGQY 107
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|935602957|ref|WP_054466915.1| (ferredoxin [Planktothricoides sp. SR001] >gi|923470188|gb|KOR36039.1| ferredoxin [Planktothricoides sp. SR001]) HSP 1 Score: 78.9518 bits (193), Expect = 4.832e-16 Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = 0 Query: 53 KTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQ 155 KT+ V++ ++GET LTV+ED I+E AE +P SC G+CTTCAG++I ++ GLS E K G+VL C +P L++E D VY+ Q+G+ Sbjct: 3 KTYTVEIHHQGETHTLTVAEDQKIIEVAEASGLHLPNSCNAGVCTTCAGKIIGEGSVEQSEGMGLSPELQKEGYVLLCVAYP-RSDLKIETEKEDEVYDRQFGR 105
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|428247048|gb|AFZ12828.1| (ferredoxin (2Fe-2S) [Crinalium epipsammum PCC 9333]) HSP 1 Score: 78.5666 bits (192), Expect = 8.519e-16 Identity = 43/112 (38.39%), Postives = 65/112 (58.04%), Query Frame = 0 Query: 49 LDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKK 159 L K + V++ ++G T L V ED I+ AA D+P SC G+CTTCAGR+I + E + G+S E + G+VL C +P L++E D +YE Q+GQ++K+ Sbjct: 8 LSMPKMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 117
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|1049314215|gb|OCQ92456.1| (ferredoxin [Oscillatoriales cyanobacterium USR001]) HSP 1 Score: 78.5666 bits (192), Expect = 9.183e-16 Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 0 Query: 52 TKTWDVKMTYK--GETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQY 156 +++++K+ + G+ + + V ED IL +AE + D+P SCRNG CTTCA R+ A + EA+ GLS E K G+ L C ++PC +EVE D VYE Q+G+Y Sbjct: 2 VRSYNIKIYNRQTGDRRTVQVPEDRYILHSAENQGVDLPFSCRNGACTTCAVRLKAGEVHQPEAM-GLSLELQKQGYALLCVSYPCS-DIEVETQDEDEVYELQFGRY 107
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|752555295|ref|WP_041226527.1| (ferredoxin [Crinalium epipsammum]) HSP 1 Score: 78.1814 bits (191), Expect = 1.024e-15 Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 0 Query: 53 KTWDVKMTYKGETKVLTVSEDTCILEAAEKE-WDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKK 159 K + V++ ++G T L V ED I+ AA D+P SC G+CTTCAGR+I + E + G+S E + G+VL C +P L++E D +YE Q+GQ++K+ Sbjct: 3 KMYTVQIEHQGNTHTLQVPEDQIIIRAASAAGLDLPSSCNAGVCTTCAGRIIEGKVDQAEGM-GVSPELQEKGYVLLCVAYP-RSDLKIESEKEDELYELQFGQFQKR 108
BLAST of EWM28287.1 vs. NCBI_GenBank
Match: gi|1194462569|gb|OUC16058.1| (ferredoxin [Alkalinema sp. CACIAM 70d]) HSP 1 Score: 78.1814 bits (191), Expect = 1.041e-15 Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 0 Query: 55 WDVKMTYKGETKVLTVSEDTCILEAA-EKEWDVPCSCRNGICTTCAGRVIANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEK 158 + V++ ++G+T V+ V +D ILE A E D+P SC G+CTTCA +V+ ++ + + G+SAE G+ L C ++PC L++E +TVY Q+GQY+K Sbjct: 5 YRVEILHQGQTHVIEVPDDRTILEVANEMGLDLPVSCTAGVCTTCAAKVMEGKVNQADNL-GISAELQAEGYALLCVSYPCS-NLKIETEKEETVYHLQFGQYQK 107 The following BLAST results are available for this feature:
BLAST of EWM28287.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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