EWM28247.1, cds2506 (CDS) Nannochloropsis gaditana

Overview
NameEWM28247.1
Unique Namecds2506
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:556281..556675 +
Alignment locationCM002459.1:556827..556936 +
Alignment locationCM002459.1:557050..557352 +
Alignment locationCM002459.1:557495..557703 +
Alignment locationCM002459.1:557783..557831 +
Alignment locationCM002459.1:557905..558194 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28247.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g157.9178.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:556281..556675 +
CM002459.1supercontigCM002459.1:556827..556936 +
CM002459.1supercontigCM002459.1:557050..557352 +
CM002459.1supercontigCM002459.1:557495..557703 +
CM002459.1supercontigCM002459.1:557783..557831 +
CM002459.1supercontigCM002459.1:557905..558194 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000313PWWP_dom
IPR017923TFIIS_N
IPR003617TFIIS/CRSP70_N_sub
Homology
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|585110592|gb|EWM28247.1| (hypothetical protein Naga_100004g157 [Nannochloropsis gaditana])

HSP 1 Score: 921.383 bits (2380), Expect = 0.000e+0
Identity = 451/451 (100.00%), Postives = 451/451 (100.00%), Query Frame = 0
Query:    1 MSDASKEVLAPPSGSGGPVMRDEGTCGKGKEEKENAESRETSEVKKTEEEGEEEDIDDDALEDEGSAGGDVSGGKDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSGQGGQNALRKGTSNKQQSFLTSEKSRINETHEALKGKKKKRLHADDEISGARPSGGAAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAPEPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSGTSSGLEG 451
            MSDASKEVLAPPSGSGGPVMRDEGTCGKGKEEKENAESRETSEVKKTEEEGEEEDIDDDALEDEGSAGGDVSGGKDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSGQGGQNALRKGTSNKQQSFLTSEKSRINETHEALKGKKKKRLHADDEISGARPSGGAAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAPEPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSGTSSGLEG
Sbjct:    1 MSDASKEVLAPPSGSGGPVMRDEGTCGKGKEEKENAESRETSEVKKTEEEGEEEDIDDDALEDEGSAGGDVSGGKDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKESKEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLKSVRERAREEVKQSGQGGQNALRKGTSNKQQSFLTSEKSRINETHEALKGKKKKRLHADDEISGARPSGGAAQGVKKWKKDFERESEKDRFNRLSRNLQIMLEDEILNVPKICSTLEKLSAMTVTIEQLTESGVGQVVKGLRKHAQSEIQVQAKAAFSRWKENFKQEIKMAPEPAVPGDVNLERKRQEAHDPKEDKIESQKPDAQSYTPTASTNAETTSSGTSSGLEG 451          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|301121572|ref|XP_002908513.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103544|gb|EEY61596.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 66.2402 bits (160), Expect = 6.044e-8
Identity = 42/130 (32.31%), Postives = 69/130 (53.08%), Query Frame = 0
Query:   99 VVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPGPL 221
            V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +   + +      T +++F+  Y  N + S+ FK IEPW  TK + +E +    +KA KR +  +  AI +A+++   P+ ER+ G L
Sbjct:  130 VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKNLE------TKYLVFF--YVSNNYASISFKMIEPWDDTKNKYREGYPEKDSKAPKR-RVSLMMAIEVADKETTLPIEERADGLL 250          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|635370581|emb|CCI41327.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 66.2402 bits (160), Expect = 7.286e-8
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = 0
Query:   99 VVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW---TKESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPGPLDLK------SVRERAREEVKQSGQGGQNALRKGTSNKQQ 254
            V+ +P++ K    Q+VWAK  G+ +WP  +  P  +    ++    S +      + + +F+Y   N+GP     VPFK++E W    ++ +E F    AKA KR K+ +  AI  A+ D  RP  ER+   L++       SVR      ++ +G       +  T + QQ
Sbjct:  136 VLALPQEIKDMFGQLVWAKMQGYPYWPALVVDPRHLPSSQQKQAIRSFET-----SKYWVFFYRARNFGP-----VPFKSVEKWLDTNQKYREGFPVGAAKAPKRRKE-LMGAIEDADVDYKRPAIERASDFLEVSISYVAMSVRHLFMRSLQHTGTATNRTAKANTISAQQ 296          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|1214702260|gb|OWZ14484.1| (hypothetical protein PHMEG_00012040 [Phytophthora megakarya])

HSP 1 Score: 65.4698 bits (158), Expect = 1.027e-7
Identity = 48/149 (32.21%), Postives = 75/149 (50.34%), Query Frame = 0
Query:   89 EKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYYNYGPNAFDSVPFKNIEPWTKES-------KEAFAKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVR 227
            ++E  L  A V  + ++ K R  Q+VWAK  G+ +WP  I  P  +   L+ +     KA E   T +++F+Y    N F ++ FK IEPW            E  +KA KR + K+  AI +A+ +   P+ ER+ G   PL+L  V+
Sbjct:  130 QEEQKLVEAKVNALSDEIKGRFGQIVWAKMGGYPYWPCIITDPRLLPQKLQETAM---KALE---TKYLVFFYVS--NNFATISFKMIEPWDDTKFKYREGHPEKDSKAPKR-RVKLMSAIEVADRETKLPIQERADGLLKPLELVVVK 269          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|570965399|gb|ETP28518.1| (hypothetical protein F442_22188 [Phytophthora parasitica P10297])

HSP 1 Score: 65.4698 bits (158), Expect = 1.170e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|675213397|ref|XP_008915583.1| (hypothetical protein PPTG_19076 [Phytophthora parasitica INRA-310] >gi|568084163|gb|ETM99103.1| hypothetical protein PPTG_19076 [Phytophthora parasitica INRA-310])

HSP 1 Score: 65.4698 bits (158), Expect = 1.233e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|567973762|gb|ETL24417.1| (hypothetical protein L916_21569 [Phytophthora parasitica] >gi|570935109|gb|ETP00366.1| hypothetical protein F441_22213 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.4698 bits (158), Expect = 1.277e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|567945160|gb|ETK70971.1| (hypothetical protein L915_21700 [Phytophthora parasitica] >gi|568003287|gb|ETL77637.1| hypothetical protein L917_21421 [Phytophthora parasitica] >gi|570311379|gb|ETO59327.1| hypothetical protein F444_22301 [Phytophthora parasitica P1976])

HSP 1 Score: 65.4698 bits (158), Expect = 1.288e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|566007659|gb|ETI30570.1| (hypothetical protein F443_22307 [Phytophthora parasitica P1569] >gi|568033170|gb|ETM30892.1| hypothetical protein L914_21433 [Phytophthora parasitica])

HSP 1 Score: 65.0846 bits (157), Expect = 1.358e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
BLAST of EWM28247.1 vs. NCBI_GenBank
Match: gi|970643980|gb|KUF85018.1| (Twinfilin [Phytophthora nicotianae])

HSP 1 Score: 65.0846 bits (157), Expect = 1.546e-7
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 0
Query:   75 KDVEVEGEDDIDSEEKEAALRAALVVGMPEDQKARLKQVVWAKSAGFSHWPGFIYHPADVRDDLRRSCYSSAKAKEGPRTHHIIFYY---NYGPNAFDSVPFKNIEPW--TK-ESKEAF----AKASKRFKDKIPEAINLAEEDAARPMAERSPG---PLDLKSVRERA 230
            K   +E EDD   E++E   +   V  + +D K R  Q+VWAK AG+  WP  I  P  +   L+ +     +      T  ++F+Y   NY P     + FK IE W  TK + +E +    +KA KR + K+  AI +A+++   P+ +R+ G   P+++ +V++ A
Sbjct:  108 KKAAIETEDDAVEEQREVEKK---VAALSDDVKGRFGQIVWAKMAGYPFWPCIITDPRLLPKKLQETAMKHLE------TKFLVFFYVSNNYAP-----ISFKMIESWDDTKNKYREGYPEKDSKAPKR-RAKLMLAIEVADKETKLPIEDRADGLLKPVEMVAVQQPA 261          
The following BLAST results are available for this feature:
BLAST of EWM28247.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110592|gb|EWM28247.1|0.000e+0100.00hypothetical protein Naga_100004g157 [Nannochlorop... [more]
gi|301121572|ref|XP_002908513.1|6.044e-832.31conserved hypothetical protein [Phytophthora infes... [more]
gi|635370581|emb|CCI41327.1|7.286e-827.91unnamed protein product [Albugo candida][more]
gi|1214702260|gb|OWZ14484.1|1.027e-732.21hypothetical protein PHMEG_00012040 [Phytophthora ... [more]
gi|570965399|gb|ETP28518.1|1.170e-730.18hypothetical protein F442_22188 [Phytophthora para... [more]
gi|675213397|ref|XP_008915583.1|1.233e-730.18hypothetical protein PPTG_19076 [Phytophthora para... [more]
gi|567973762|gb|ETL24417.1|1.277e-730.18hypothetical protein L916_21569 [Phytophthora para... [more]
gi|567945160|gb|ETK70971.1|1.288e-730.18hypothetical protein L915_21700 [Phytophthora para... [more]
gi|566007659|gb|ETI30570.1|1.358e-730.18hypothetical protein F443_22307 [Phytophthora para... [more]
gi|970643980|gb|KUF85018.1|1.546e-730.18Twinfilin [Phytophthora nicotianae][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2514rna2514Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications