EWM28257.1, cds2503 (CDS) Nannochloropsis gaditana

Overview
NameEWM28257.1
Unique Namecds2503
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:550932..550994 +
Alignment locationCM002459.1:551071..551310 +
Alignment locationCM002459.1:551434..551647 +
Alignment locationCM002459.1:551738..551923 +
Alignment locationCM002459.1:552031..552230 +
Alignment locationCM002459.1:552361..552525 +
Alignment locationCM002459.1:552619..552705 +
Alignment locationCM002459.1:552788..553105 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28257.1
Productap-4 complex subunit mu
Orig transcript idgnl|cribi|Naga_100004g154.9188.mrna
GeneCPC17
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:550932..550994 +
CM002459.1supercontigCM002459.1:551071..551310 +
CM002459.1supercontigCM002459.1:551434..551647 +
CM002459.1supercontigCM002459.1:551738..551923 +
CM002459.1supercontigCM002459.1:552031..552230 +
CM002459.1supercontigCM002459.1:552361..552525 +
CM002459.1supercontigCM002459.1:552619..552705 +
CM002459.1supercontigCM002459.1:552788..553105 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0030131clathrin adaptor complex
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR028565MHD
IPR008968Clathrin_mu_C
IPR001392Clathrin_mu
Homology
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|585110602|gb|EWM28257.1| (ap-4 complex subunit mu [Nannochloropsis gaditana])

HSP 1 Score: 1004.97 bits (2597), Expect = 0.000e+0
Identity = 490/490 (100.00%), Postives = 490/490 (100.00%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGSER 490
            MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGSER
Sbjct:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRVGTGSER 490          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|299115981|emb|CBN75982.1| (Coatomer protein complex, gamma sub-unit [Ectocarpus siliculosus])

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 290/483 (60.04%), Postives = 370/483 (76.60%), Query Frame = 0
Query:    5 MSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPK-INSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGG--YGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRV 484
            +S FFILSPRGDTIIS+D+RGD++    +  FRKVKFW+ GD PP F +DG+N++YVRKNGLLF  +T++NVSPS  +ELLNR+AKVFKDYCGVLSEE+IRKNFILVYELLDE +D+GY Q TSTE+L+NHV NEPI+V+S KS +R+P  + +KT PS+++ KP++ S Q  G Q+NEIFVDILERL+VLFS SG ++NS+IDGCIQMKSYLSGNPEL+LALN DLV+GK   G  +G+VVLDDCNFHEC +LDEFES R LSF PPDGEF+LLNYR+  EFR PFR+FP++ ++ PY++E+ +++RAD+PE+  G NV VR+PMPR+A++V++E+                GQT+EY+A+E RVVW IKKF G++E TL  K+TL               ++VN+A+                    RKE+GPVSM FEIPMYNVSNLQVRYL+I+E  KSYNP+RWVRYVTQ+SS+VCRV
Sbjct:    6 VSQFFILSPRGDTIISKDYRGDAVAGTTDTFFRKVKFWESGDPPPCFTIDGVNYIYVRKNGLLFAVSTQWNVSPSMFLELLNRLAKVFKDYCGVLSEEAIRKNFILVYELLDETLDYGYPQGTSTETLRNHVRNEPILVDSVKS-MRLPSALKTKTAPSSSIQKPVSGSGQKNGSQRNEIFVDILERLSVLFSQSGQVVNSSIDGCIQMKSYLSGNPELRLALNEDLVVGKANAGSSFGSVVLDDCNFHECAKLDEFESMRQLSFTPPDGEFVLLNYRMNAEFRCPFRLFPSIGDIDPYRMEVVVIVRADMPETAAGTNVVVRLPMPRNAVSVSSEVES-----------RVPGQTAEYSANEHRVVWTIKKFQGSSELTLRAKVTLP--------------NVVNAAN--------------------RKEVGPVSMQFEIPMYNVSNLQVRYLKIAEFAKSYNPFRWVRYVTQSSSYVCRV 442          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|676383657|ref|XP_009035107.1| (hypothetical protein AURANDRAFT_36844 [Aureococcus anophagefferens] >gi|323454428|gb|EGB10298.1| hypothetical protein AURANDRAFT_36844 [Aureococcus anophagefferens])

HSP 1 Score: 578.941 bits (1491), Expect = 0.000e+0
Identity = 289/489 (59.10%), Postives = 361/489 (73.82%), Query Frame = 0
Query:    5 MSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFW--DKGD---APPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSKTTPSTAVHKPIT--ISAQSGGKQ--KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQKSYNPYRWVRYVTQASSFVCRV 484
            +S FF+LSPRGDTIIS+DFRGDS   AAE  FRKVKFW  DKG    APPVF +  + +V+V+K+GL+F   +RFN SPS T+ELLNR+ KVFKDYCGVLSEE+IRKNFIL+YELLDE++DFGY Q TSTE+LK  VYNEP++V++ K+  R+P +++KTTPST+VHKPI    S+  GG +  KNEIFVDILERL +LFS SG ++NSTIDGCIQMKSYLSGNPEL+LALN DLV+GKGG  YGAVVLDDCNFHECVRLD+FESSR LSF PP+GEF++LNYR TG+FRAPFR+ P ++E SP+ +++ +++RA+IPE+NYG NV + VP PR+          G   G  SG     G  ++Y+A+ +++V+ +KKF G  E     KITL                          SA  TA         ARKE+GPVS++FEIPMYNVSNLQV+YLRI+EQ K+YNPYRWVRYVT++SS+VCR 
Sbjct:    2 LSQFFVLSPRGDTIISKDFRGDSPQGAAEAFFRKVKFWSNDKGASGAAPPVFRVGDVTYVWVKKSGLMFACNSRFNCSPSMTLELLNRVVKVFKDYCGVLSEEAIRKNFILIYELLDEVIDFGYPQGTSTENLKAFVYNEPVLVDAQKT--RVPSLSAKTTPSTSVHKPIAGGKSSVMGGARSDKNEIFVDILERLTMLFSPSGAVVNSTIDGCIQMKSYLSGNPELRLALNEDLVVGKGGA-YGAVVLDDCNFHECVRLDDFESSRLLSFLPPEGEFVVLNYRCTGDFRAPFRVLPQIEESSPFTIDVVVLVRAEIPETNYGGNVVITVPCPRTTA--------GASCGPPSG--GAIGHGADYDAANRKLVFTVKKFQGGVEHAFRAKITL--------------------------SAVCTA--------QARKEVGPVSLTFEIPMYNVSNLQVKYLRIAEQSKAYNPYRWVRYVTRSSSYVCRC 443          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|1173937532|gb|OQR88307.1| (AP-4 complex subunit mu-1 [Achlya hypogyna])

HSP 1 Score: 553.903 bits (1426), Expect = 0.000e+0
Identity = 271/488 (55.53%), Postives = 343/488 (70.29%), Query Frame = 0
Query:    4 AMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVV-----ESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            ++S F+ILS RGDT++S DFRGD   ++AEI FRK KFWDKGDAPP FH+DG+N++YV+KNGL F ATTRFNVSP+  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+GYAQ TSTE LK HV+NE I+V       AK++  +    S    + AV KP+     +  K +NE+F DILERLNV+FS  G ++N++++G IQMKSYL+GNPEL+LALN DLVIG+    YG VVLDDCNFHECV+LDEFE  R L F PPDGEF ++NYRITGEFRAPFRIFP V+E SP K+EM L +RAD+P++NYGANV +R P+P++ ++V+ +I +            T+GQ +EY  +E +V W IK+F GATE TL  KITL+                                 P Q +   R+EIGPVSM+FEIPMYNVS LQVRYLRI E  +  +Y   RWVRYVTQ+SS+V R+
Sbjct:    2 SISQFYILSSRGDTVLSSDFRGDVASDSAEIFFRKAKFWDKGDAPPAFHVDGVNYLYVKKNGLYFVATTRFNVSPAYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGYAQDTSTEGLKVHVHNEAILVGDAALAKAKASTGILGRQSNIKAANAVRKPVATGQSANKKDENELFCDILERLNVVFSAGGQMLNASVEGRIQMKSYLAGNPELRLALNEDLVIGQKSSSYGQVVLDDCNFHECVQLDEFERDRVLVFTPPDGEFTVINYRITGEFRAPFRIFPFVEEQSPTKIEMILKVRADMPDNNYGANVIIRFPVPQNTVSVSCDIGKN-----------TAGQLAEYRENENQVRWAIKRFAGATEMTLRAKITLSA--------------------------------PSQHV---RREIGPVSMNFEIPMYNVSTLQVRYLRIPEHARHPNYKYKRWVRYVTQSSSYVSRI 443          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|695408167|ref|XP_009524568.1| (hypothetical protein PHYSODRAFT_557715 [Phytophthora sojae] >gi|348682035|gb|EGZ21851.1| hypothetical protein PHYSODRAFT_557715 [Phytophthora sojae])

HSP 1 Score: 551.206 bits (1419), Expect = 0.000e+0
Identity = 280/495 (56.57%), Postives = 349/495 (70.51%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSK-------TTPSTAVHKPITISAQSGGKQ-KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGG-GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFW+KGDAPP F++DG+N+++V+KNGL F ATTR+NVSPS  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+G+AQ TSTE LK HV+NE I+V  A   L  PK +SK          ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG  G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP V+E+SP K+EM L IRAD+PE+NYGANV +R P+P+S +AV+ +I +           + +GQ +EY  +E +V W IK+F G TE TL  KITL                                   GQ     R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:    1 MSSSISQFYILSTRGDTIIFNDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAV--LSKPKASSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNTGARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIGK-----------SAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-----------------------------------GQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 447          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|1173936271|gb|OQR87251.1| (AP-4 complex subunit mu-1 [Thraustotheca clavata])

HSP 1 Score: 550.436 bits (1417), Expect = 0.000e+0
Identity = 269/488 (55.12%), Postives = 344/488 (70.49%), Query Frame = 0
Query:    4 AMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVV-----ESAKSNLRMPKINSKTTPSTAVHKPITISAQSGGKQKNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGGGYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            ++S F+ILS RGDT+++ DFRGD   ++AEI FRK KFWDKGDAPP FH+DG+N++YV+KNGL F ATTRFNVSP+  +ELL R+ +VFKDYCGVLSEE+++KNFIL YELLDE MD+GYAQ TSTE LK HV+NE I+V       AK++  +    +   P+ AV KP+     S  K +NE+F DILERLNV+FS SG ++N++++G IQMKSYL+GNPEL+LALN DLVIG+    YG VVLDDCNFHECV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP ++E SP K+EM L IRAD+P++NYGANV +R P+P++ ++V+ +I +            T+GQ +EY  +E +V W IK+FPGA+E TL  KITL+   +                                     R+EIGPVSM+FEIPMYNVS LQVRYLRI E  +  +Y   RWVRYVTQ+SS+V R+
Sbjct:    2 SISQFYILSSRGDTVLANDFRGDVASDSAEIFFRKAKFWDKGDAPPAFHVDGVNYLYVKKNGLYFVATTRFNVSPAYILELLTRLCRVFKDYCGVLSEETLQKNFILCYELLDETMDYGYAQDTSTEGLKVHVHNEAILVGEAAVAKAKASGGILGRQTNIKPANAVRKPVATGQSSNKKDENELFCDILERLNVVFSPSGQMLNASVEGRIQMKSYLAGNPELRLALNEDLVIGQKSSSYGQVVLDDCNFHECVQLDEFERDRVLVFTPPDGEFTVINYRITGDFRAPFRIFPFLEEQSPTKLEMILKIRADMPDNNYGANVIIRFPVPQNTVSVSCDIGKN-----------TAGQLAEYRENENQVRWAIKRFPGASEFTLRAKITLSAPSL-----------------------------------HVRREIGPVSMNFEIPMYNVSTLQVRYLRIPEHARHPNYKYKRWVRYVTQSSSYVSRI 443          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|568033350|gb|ETM31061.1| (hypothetical protein L914_21285 [Phytophthora parasitica])

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 280/495 (56.57%), Postives = 348/495 (70.30%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSK-------TTPSTAVHKPITISAQSGGKQ-KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGG-GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFW+KGDAPP F++DG+N+++V+KNGL F ATTR+NVSPS  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+G+AQ TSTE LK HV+NE I+V  A   L  PK  SK          ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG  G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP V+E+SP K+EM L IRAD+PE+NYGANV +R P+P+S +AV+ +I +           + +GQ +EY  +E +V W IK+F G TE TL  KITL                                   GQ     R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAV--LSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNTGARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIGK-----------SAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-----------------------------------GQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|567973925|gb|ETL24575.1| (hypothetical protein L916_21430 [Phytophthora parasitica] >gi|570935262|gb|ETP00519.1| hypothetical protein F441_22068 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 280/495 (56.57%), Postives = 348/495 (70.30%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSK-------TTPSTAVHKPITISAQSGGKQ-KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGG-GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFW+KGDAPP F++DG+N+++V+KNGL F ATTR+NVSPS  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+G+AQ TSTE LK HV+NE I+V  A   L  PK  SK          ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG  G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP V+E+SP K+EM L IRAD+PE+NYGANV +R P+P+S +AV+ +I +           + +GQ +EY  +E +V W IK+F G TE TL  KITL                                   GQ     R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAV--LSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNTGARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIGK-----------SAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-----------------------------------GQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|675213051|ref|XP_008915410.1| (hypothetical protein PPTG_18768 [Phytophthora parasitica INRA-310] >gi|566007817|gb|ETI30728.1| hypothetical protein F443_22165 [Phytophthora parasitica P1569] >gi|568003448|gb|ETL77796.1| hypothetical protein L917_21283 [Phytophthora parasitica] >gi|568084335|gb|ETM99268.1| hypothetical protein PPTG_18768 [Phytophthora parasitica INRA-310] >gi|570311536|gb|ETO59484.1| hypothetical protein F444_22157 [Phytophthora parasitica P1976] >gi|570965555|gb|ETP28674.1| hypothetical protein F442_22039 [Phytophthora parasitica P10297])

HSP 1 Score: 550.051 bits (1416), Expect = 0.000e+0
Identity = 280/495 (56.57%), Postives = 348/495 (70.30%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSK-------TTPSTAVHKPITISAQSGGKQ-KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGG-GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFW+KGDAPP F++DG+N+++V+KNGL F ATTR+NVSPS  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+G+AQ TSTE LK HV+NE I+V  A   L  PK  SK          ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG  G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP V+E+SP K+EM L IRAD+PE+NYGANV +R P+P+S +AV+ +I +           + +GQ +EY  +E +V W IK+F G TE TL  KITL                                   GQ     R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:   45 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAV--LSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNTGARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIGK-----------SAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-----------------------------------GQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 491          
BLAST of EWM28257.1 vs. NCBI_GenBank
Match: gi|970617320|gb|KUF65421.1| (AP-4 complex subunit mu-1 [Phytophthora nicotianae])

HSP 1 Score: 549.666 bits (1415), Expect = 0.000e+0
Identity = 280/495 (56.57%), Postives = 348/495 (70.30%), Query Frame = 0
Query:    1 MSGAMSSFFILSPRGDTIISRDFRGDSLPNAAEILFRKVKFWDKGDAPPVFHLDGLNFVYVRKNGLLFGATTRFNVSPSTTVELLNRMAKVFKDYCGVLSEESIRKNFILVYELLDEMMDFGYAQATSTESLKNHVYNEPIVVESAKSNLRMPKINSK-------TTPSTAVHKPITISAQSGGKQ-KNEIFVDILERLNVLFSGSGYIINSTIDGCIQMKSYLSGNPELKLALNSDLVIGKGGG-GYGAVVLDDCNFHECVRLDEFESSRTLSFFPPDGEFILLNYRITGEFRAPFRIFPTVDEVSPYKVEMTLMIRADIPESNYGANVQVRVPMPRSAIAVTTEIARGGGAGLASGALATSGQTSEYNASEKRVVWNIKKFPGATEQTLSIKITLAGGGVGGSSTSSSGGSLVNSASTGSMSAGGTAPPPGQLIGSARKEIGPVSMSFEIPMYNVSNLQVRYLRISEQQK--SYNPYRWVRYVTQASSFVCRV 484
            MS ++S F+ILS RGDTII  DFRGD   N+AEI FRKVKFW+KGDAPP F++DG+N+++V+KNGL F ATTR+NVSPS  +ELL R+ +VFKDYCGVLSEE++RKNFIL YELLDE +D+G+AQ TSTE LK HV+NE I+V  A   L  PK  SK          ++AV KP+  + QS  KQ +NE+F DILERLNV+FS  G ++N++I+G IQ+KSYLSGNPEL+LALN DLVIG  G   YG VVLDDCNFH+CV+LDEFE  R L F PPDGEF ++NYRITG+FRAPFRIFP V+E+SP K+EM L IRAD+PE+NYGANV +R P+P+S +AV+ +I +           + +GQ +EY  +E +V W IK+F G TE TL  KITL                                   GQ     R+EIGPVSM+FEIPMYN S+LQVRYLRI E  +  +Y   RWVRYVTQ+SS+VCR+
Sbjct:    1 MSSSISQFYILSTRGDTIIFSDFRGDVESNSAEIFFRKVKFWEKGDAPPTFNVDGVNYLFVKKNGLYFVATTRYNVSPSYILELLTRLCRVFKDYCGVLSEETLRKNFILCYELLDETLDYGFAQDTSTEGLKVHVHNEAILVGDAV--LSKPKAGSKFMNRSSNIKAASAVKKPVATAGQSSKKQDENELFCDILERLNVVFSSGGQMLNASIEGRIQLKSYLSGNPELRLALNEDLVIGNTGARQYGQVVLDDCNFHDCVQLDEFERDRVLIFQPPDGEFTVINYRITGDFRAPFRIFPFVEELSPTKIEMVLKIRADMPENNYGANVIIRFPVPQSTVAVSCDIGK-----------SAAGQLAEYRENENQVRWAIKRFTGGTELTLRAKITL-----------------------------------GQPSPHVRREIGPVSMNFEIPMYNTSSLQVRYLRIPEHARHPNYTYKRWVRYVTQSSSYVCRI 447          
The following BLAST results are available for this feature:
BLAST of EWM28257.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110602|gb|EWM28257.1|0.000e+0100.00ap-4 complex subunit mu [Nannochloropsis gaditana][more]
gi|299115981|emb|CBN75982.1|0.000e+060.04Coatomer protein complex, gamma sub-unit [Ectocarp... [more]
gi|676383657|ref|XP_009035107.1|0.000e+059.10hypothetical protein AURANDRAFT_36844 [Aureococcus... [more]
gi|1173937532|gb|OQR88307.1|0.000e+055.53AP-4 complex subunit mu-1 [Achlya hypogyna][more]
gi|695408167|ref|XP_009524568.1|0.000e+056.57hypothetical protein PHYSODRAFT_557715 [Phytophtho... [more]
gi|1173936271|gb|OQR87251.1|0.000e+055.12AP-4 complex subunit mu-1 [Thraustotheca clavata][more]
gi|568033350|gb|ETM31061.1|0.000e+056.57hypothetical protein L914_21285 [Phytophthora para... [more]
gi|567973925|gb|ETL24575.1|0.000e+056.57hypothetical protein L916_21430 [Phytophthora para... [more]
gi|675213051|ref|XP_008915410.1|0.000e+056.57hypothetical protein PPTG_18768 [Phytophthora para... [more]
gi|970617320|gb|KUF65421.1|0.000e+056.57AP-4 complex subunit mu-1 [Phytophthora nicotianae... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2511rna2511Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications