EWM28260.1, cds2502 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|585110605|gb|EWM28260.1| (mitochondrial 3-hydroxyisobutyryl- hydrolase [Nannochloropsis gaditana]) HSP 1 Score: 1298.88 bits (3360), Expect = 0.000e+0 Identity = 630/630 (100.00%), Postives = 630/630 (100.00%), Query Frame = 0
Query: 1 MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI 630
MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI
Sbjct: 1 MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI 630
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1208514184|gb|OWM72605.1| (hypothetical protein CDL15_Pgr013073 [Punica granatum]) HSP 1 Score: 105.145 bits (261), Expect = 1.020e-20 Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = 0
Query: 27 SGIKTTNMASRASTTHYRILESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAG-----WMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
+ I T ++ + + S G R+V+L PT ++ ++ + +E + + ++L+ GKAFSAG +C S+ GH S P +R+ SY+LAT KP IS G V+GGG GL + +RI TEK+ F + G D G SY LSR +F YLALTGA L G M+A G+++H +
Sbjct: 4 TSIITCSVQQVVDQIRFEEISSSGVRKVILNRPTKLNSINYEMVSKVLGAAEKYERDPAVSCIILKAN-GKAFSAGGDVISVIC-SSLGGHWSYPVLFYRKILMASYLLATFKKPVISLLQGIVIGGGAGLSIQTTFRIVTEKTIFSMPEASIGLFADVGASYFLSRLPG-------SFGEYLALTGARLDGPEMVACGLASHFV 199
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|702307513|ref|XP_010050119.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis]) HSP 1 Score: 105.145 bits (261), Expect = 1.202e-20 Identity = 72/207 (34.78%), Postives = 110/207 (53.14%), Query Frame = 0
Query: 33 NMASRASTTHYR--ILESP-------GCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESI----TGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
NM S +ST +R + E P G R+V+L P+ L+ + KL+ +E + + AV+L+G GKAF AG ++I TGH S ++ +++ L +++AT KP + +G V+GGG GL + A +R+ TEK+ F + + G D G S+ LS+ F YL LTGA L GE MLA G++TH +
Sbjct: 2 NMQSLSSTELFRRDLTEQPVLFEEHSGVRKVILNRPSKLNSLNLEMISQMFSKLKIYEDDPTVNAVILKGN-GKAFCAGGDVFQNICSMLTGHWSFGASFYKKQLTLDHLIATYKKPLVCLINGVVMGGGAGLSMHASFRVVTEKTVFAMPEAILGIFPDVGASHFLSKLPG-------YFGEYLGLTGARLDGETMLACGLATHFV 200
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|629078107|gb|KCW45305.1| (hypothetical protein EUGRSUZ_L01034 [Eucalyptus grandis]) HSP 1 Score: 96.6709 bits (239), Expect = 1.552e-18 Identity = 64/183 (34.97%), Postives = 94/183 (51.37%), Query Frame = 0
Query: 47 ESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTH 221
E G R+V+L P+ L + KLQ +E ++ + V+L+G GKAF AG MC +TGH S ++ +++ L +++AT KP I G V+GGG G+ + +R+ TEK+ F + G D G SY LS+ F YL LTGA + G MLA G++TH
Sbjct: 23 EYSGTRKVILNRPSKLNTLTLEMVSQMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMC-SMLTGHWSYGASFYKKQLTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVFAMPEASIGLFPDAGASYFLSKLPG-------YFGEYLGLTGARMDGATMLACGLATH 196
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|702508926|ref|XP_010040325.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis]) HSP 1 Score: 98.5969 bits (244), Expect = 1.763e-18 Identity = 64/185 (34.59%), Postives = 95/185 (51.35%), Query Frame = 0
Query: 47 ESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
E G R+V+L P+ L + KLQ +E ++ + V+L+G GKAF AG MC +TGH S ++ +++ L +++AT KP I G V+GGG G+ + +R+ TEK+ F + G D G SY LS+ F YL LTGA + G MLA G++TH +
Sbjct: 23 EYSGTRKVILNRPSKLNTLTLEMVSQMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMCS-MLTGHWSYGASFYKKQLTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVFAMPEASIGLFPDAGASYFLSKLPG-------YFGEYLGLTGARMDGATMLACGLATHFV 198
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|950927798|ref|XP_014495258.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Vigna radiata var. radiata]) HSP 1 Score: 97.4413 bits (241), Expect = 2.267e-18 Identity = 65/196 (33.16%), Postives = 101/196 (51.53%), Query Frame = 0
Query: 51 CRRVVLTGPTGRLDQRAAESLIW---KLQAWETNYLIQAVMLQGRPGKAFSAGW----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADL 238
C +VV+ +L+ E + L+ +E + L+Q V+L+G GKAF AG + S+ GH + ++ +++ L +++AT KPTIS +G V+GGG GL + R+R+ TEK+ F + G D G +Y LSR F YL L+GA L G + A G++TH + + SL L L
Sbjct: 21 CVKVVILNRPEKLNSLNHEMICQIRSNLELYENDPLVQLVILKGN-GKAFCAGGDVVSVITSSVAGHWTYAASFYKKQLTLDHLIATYKKPTISLINGIVMGGGAGLSMPTRFRVVTEKAVFAMPEASIGLFPDVGANYFLSRLPG-------FFGEYLGLSGARLDGAEIAACGLATHFVPSTKLKSLENALQVL 208
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1091520843|ref|XP_018722058.1| (PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1 isoform X2 [Eucalyptus grandis]) HSP 1 Score: 98.2117 bits (243), Expect = 2.288e-18 Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 0
Query: 47 ESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
E G R+V+L P+ +L+ E + KLQ +E ++ + V+L+G GKAF AG MC +TGH S ++ +++ L +++AT KP I G V+GGG G+ + +R+ TEK+ + G D G SY LS+ F YL LTGA + G MLA G++TH +
Sbjct: 23 EYSGARKVILNRPS-KLNTLTLEMMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMCS-VLTGHWSYGASFYKKELTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVLAMPEASIGLFPDVGASYFLSQLPG-------YFGEYLGLTGARIDGATMLACGLATHFV 195
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|629118330|gb|KCW83005.1| (hypothetical protein EUGRSUZ_C04388 [Eucalyptus grandis]) HSP 1 Score: 98.5969 bits (244), Expect = 2.310e-18 Identity = 73/218 (33.49%), Postives = 112/218 (51.38%), Query Frame = 0
Query: 33 NMASRASTTHYR--ILESP-------GCRRVVLTGPTGRLDQRAAESLIW---------------KLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESI----TGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTH 221
NM S +ST +R + E P G R+V+L P+ +L+ E + + KL+ +E + + AV+L+G GKAF AG ++I TGH S ++ +++ L +++AT KP + +G V+GGG GL + A +R+ TEK+ F + + G D G S+ LS+ F YL LTGA L GE MLA G++TH
Sbjct: 2 NMQSLSSTELFRRDLTEQPVLFEEHSGVRKVILNRPS-KLNSLNLEMVHYSSASPLSAQISQMFSKLKIYEDDPTVNAVILKGN-GKAFCAGGDVFQNICSMLTGHWSFGASFYKKQLTLDHLIATYKKPLVCLINGVVMGGGAGLSMHASFRVVTEKTVFAMPEAILGIFPDVGASHFLSKLPG-------YFGEYLGLTGARLDGETMLACGLATH 210
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|953501708|emb|CEG37157.1| (mitochondrial 3-hydroxyisobutyryl-hydrolase [Plasmopara halstedii]) HSP 1 Score: 98.2117 bits (243), Expect = 3.571e-18 Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 0
Query: 50 GCRRVVLTGP--TGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPST------AFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSR----------------SRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFE 241
G R V P L A L+ +L +E N + A++ G GKAF AG ++ + +P+T FR +L+Y+LAT KP IS+ +G +GGG+GL + ++ ++TEK+ F + G+ D G SYLL P+ G R + Q YLALTG L G ++ G++TH++ S +L +L FE
Sbjct: 40 GVRTVQFNRPEKLNALTLPMALHLMHRLHKFEANKTVNAIVFSGNGGKAFCAGGDI-RALADNGKDPATRHFALDFFRHEYRLNYLLATTEKPIISFLNGVTMGGGVGLSMHGKFVVATEKTVFAMPETAIGFFPDVGASYLL--PRLGRRLVEGEDYVADVPKSQALKGQGLGTYLALTGERLKGHEVIGLGLATHYLPTSEYDTLVHQLTGFEFE 253
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1173957930|gb|OQS04367.1| (3-hydroxyisobutyryl-CoA hydrolase [Thraustotheca clavata]) HSP 1 Score: 97.8265 bits (242), Expect = 4.872e-18 Identity = 69/227 (30.40%), Postives = 103/227 (45.37%), Query Frame = 0
Query: 50 GCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPST------AFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLS------------RPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDF---VVEDVLSE 252
G R V P L+ SL K+Q +E N I A++ +G KAF AG + + P T FR +L+YMLAT+ P IS +G +GGG+GL + ++ ++TEK+TF + G+ D G SY+L RP Q +LALTG L G + ++TH ++ L L + FEP+ V +D++ E
Sbjct: 50 GIRNVTFNRPKVLNALNLPMIRSLTPKIQKFEKNPAINAIIFEGAGEKAFCAGGDI-RFLYDNGKNPETRHLALDFFREEYRLNYMLATMSTPVISIVNGITMGGGVGLSMHGKFVVATEKTTFAMPETAIGFFPDVGGSYILPRIGRKIAQQDDYRPLTDDSISGQGLGTFLALTGERLKGAEVFGVALATHFVESKEIADLRNHLVEFDFEPELRQSVRDDIIDE 275 The following BLAST results are available for this feature:
BLAST of EWM28260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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