EWM28260.1, cds2502 (CDS) Nannochloropsis gaditana

Overview
NameEWM28260.1
Unique Namecds2502
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:550220..550441 -
Alignment locationCM002459.1:550114..550146 -
Alignment locationCM002459.1:549440..550038 -
Alignment locationCM002459.1:549186..549342 -
Alignment locationCM002459.1:548941..549078 -
Alignment locationCM002459.1:548756..548853 -
Alignment locationCM002459.1:548537..548666 -
Alignment locationCM002459.1:548256..548446 -
Alignment locationCM002459.1:547660..547984 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28260.1
Productmitochondrial 3-hydroxyisobutyryl- hydrolase
Orig transcript idgnl|cribi|Naga_100004g153.9191.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:550220..550441 -
CM002459.1supercontigCM002459.1:550114..550146 -
CM002459.1supercontigCM002459.1:549440..550038 -
CM002459.1supercontigCM002459.1:549186..549342 -
CM002459.1supercontigCM002459.1:548941..549078 -
CM002459.1supercontigCM002459.1:548756..548853 -
CM002459.1supercontigCM002459.1:548537..548666 -
CM002459.1supercontigCM002459.1:548256..548446 -
CM002459.1supercontigCM002459.1:547660..547984 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR001753Crotonase_core_superfam
IPR029045ClpP/crotonase-like_dom
Homology
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|585110605|gb|EWM28260.1| (mitochondrial 3-hydroxyisobutyryl- hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 1298.88 bits (3360), Expect = 0.000e+0
Identity = 630/630 (100.00%), Postives = 630/630 (100.00%), Query Frame = 0
Query:    1 MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI 630
            MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI
Sbjct:    1 MMRSKLAKLALEAKKLKTAPLKPQEESGIKTTNMASRASTTHYRILESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGLARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDFVVEDVLSEHASMFYRQDPSLNPPPYRELWAEWAKNDENRERARKRAEGSGTGFDTDGRWENNDEDVWEDDERDGDATDFNSEEEAAMEAFAEEGEDDPDIRSTLGGMEPLFNVFLAQYPELGPEEGNLAGRSGPRKNAQSSLPSDAEGSLWWHRNFARGDEALFQALWESTEARIKKRIEEEGMESLASVSEKFIDRFPEYISYPERTRLVDSDQALLSPWNCSVDRAKQFSEFEELVQRVASCFKGDTLEEVIENLRMDNSEWAKNCLQRMDRMSPLSLRIVFKQLEEAKDCDIEDAFRMDYRVGQRVLALNASHDSSVTSTGLAGLKDLSGDHVASFFQAFPCVTEELRLPEKERVGENQPDRRDIDVELERRFGRTSTTRGSI 630          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1208514184|gb|OWM72605.1| (hypothetical protein CDL15_Pgr013073 [Punica granatum])

HSP 1 Score: 105.145 bits (261), Expect = 1.020e-20
Identity = 69/205 (33.66%), Postives = 103/205 (50.24%), Query Frame = 0
Query:   27 SGIKTTNMASRASTTHYRILESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAG-----WMCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
            + I T ++        +  + S G R+V+L  PT    ++      ++   + +E +  +  ++L+   GKAFSAG      +C  S+ GH S P   +R+    SY+LAT  KP IS   G V+GGG GL +   +RI TEK+ F +     G   D G SY LSR          +F  YLALTGA L G  M+A G+++H +
Sbjct:    4 TSIITCSVQQVVDQIRFEEISSSGVRKVILNRPTKLNSINYEMVSKVLGAAEKYERDPAVSCIILKAN-GKAFSAGGDVISVIC-SSLGGHWSYPVLFYRKILMASYLLATFKKPVISLLQGIVIGGGAGLSIQTTFRIVTEKTIFSMPEASIGLFADVGASYFLSRLPG-------SFGEYLALTGARLDGPEMVACGLASHFV 199          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|702307513|ref|XP_010050119.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis])

HSP 1 Score: 105.145 bits (261), Expect = 1.202e-20
Identity = 72/207 (34.78%), Postives = 110/207 (53.14%), Query Frame = 0
Query:   33 NMASRASTTHYR--ILESP-------GCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESI----TGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
            NM S +ST  +R  + E P       G R+V+L  P+    L+      +  KL+ +E +  + AV+L+G  GKAF AG    ++I    TGH S  ++ +++   L +++AT  KP +   +G V+GGG GL + A +R+ TEK+ F +   + G   D G S+ LS+           F  YL LTGA L GE MLA G++TH +
Sbjct:    2 NMQSLSSTELFRRDLTEQPVLFEEHSGVRKVILNRPSKLNSLNLEMISQMFSKLKIYEDDPTVNAVILKGN-GKAFCAGGDVFQNICSMLTGHWSFGASFYKKQLTLDHLIATYKKPLVCLINGVVMGGGAGLSMHASFRVVTEKTVFAMPEAILGIFPDVGASHFLSKLPG-------YFGEYLGLTGARLDGETMLACGLATHFV 200          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|629078107|gb|KCW45305.1| (hypothetical protein EUGRSUZ_L01034 [Eucalyptus grandis])

HSP 1 Score: 96.6709 bits (239), Expect = 1.552e-18
Identity = 64/183 (34.97%), Postives = 94/183 (51.37%), Query Frame = 0
Query:   47 ESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTH 221
            E  G R+V+L  P+    L       +  KLQ +E ++ +  V+L+G  GKAF AG      MC   +TGH S  ++ +++   L +++AT  KP I    G V+GGG G+ +   +R+ TEK+ F +     G   D G SY LS+           F  YL LTGA + G  MLA G++TH
Sbjct:   23 EYSGTRKVILNRPSKLNTLTLEMVSQMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMC-SMLTGHWSYGASFYKKQLTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVFAMPEASIGLFPDAGASYFLSKLPG-------YFGEYLGLTGARMDGATMLACGLATH 196          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|702508926|ref|XP_010040325.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Eucalyptus grandis])

HSP 1 Score: 98.5969 bits (244), Expect = 1.763e-18
Identity = 64/185 (34.59%), Postives = 95/185 (51.35%), Query Frame = 0
Query:   47 ESPGCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
            E  G R+V+L  P+    L       +  KLQ +E ++ +  V+L+G  GKAF AG      MC   +TGH S  ++ +++   L +++AT  KP I    G V+GGG G+ +   +R+ TEK+ F +     G   D G SY LS+           F  YL LTGA + G  MLA G++TH +
Sbjct:   23 EYSGTRKVILNRPSKLNTLTLEMVSQMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMCS-MLTGHWSYGASFYKKQLTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVFAMPEASIGLFPDAGASYFLSKLPG-------YFGEYLGLTGARMDGATMLACGLATHFV 198          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|950927798|ref|XP_014495258.1| (PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrolase 3 [Vigna radiata var. radiata])

HSP 1 Score: 97.4413 bits (241), Expect = 2.267e-18
Identity = 65/196 (33.16%), Postives = 101/196 (51.53%), Query Frame = 0
Query:   51 CRRVVLTGPTGRLDQRAAESLIW---KLQAWETNYLIQAVMLQGRPGKAFSAGW----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADL 238
            C +VV+     +L+    E +      L+ +E + L+Q V+L+G  GKAF AG     +   S+ GH +  ++ +++   L +++AT  KPTIS  +G V+GGG GL +  R+R+ TEK+ F +     G   D G +Y LSR           F  YL L+GA L G  + A G++TH +  +   SL   L  L
Sbjct:   21 CVKVVILNRPEKLNSLNHEMICQIRSNLELYENDPLVQLVILKGN-GKAFCAGGDVVSVITSSVAGHWTYAASFYKKQLTLDHLIATYKKPTISLINGIVMGGGAGLSMPTRFRVVTEKAVFAMPEASIGLFPDVGANYFLSRLPG-------FFGEYLGLSGARLDGAEIAACGLATHFVPSTKLKSLENALQVL 208          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1091520843|ref|XP_018722058.1| (PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1 isoform X2 [Eucalyptus grandis])

HSP 1 Score: 98.2117 bits (243), Expect = 2.288e-18
Identity = 64/183 (34.97%), Postives = 97/183 (53.01%), Query Frame = 0
Query:   47 ESPGCRRVVLTGPTGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGW-----MCGESITGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHM 223
            E  G R+V+L  P+ +L+    E +  KLQ +E ++ +  V+L+G  GKAF AG      MC   +TGH S  ++ +++   L +++AT  KP I    G V+GGG G+ +   +R+ TEK+   +     G   D G SY LS+           F  YL LTGA + G  MLA G++TH +
Sbjct:   23 EYSGARKVILNRPS-KLNTLTLEMMSNKLQIYEGDHTVNLVILKGN-GKAFCAGGDVIGNMCS-VLTGHWSYGASFYKKELTLDHLIATYKKPLICLIDGVVMGGGAGISMHGSFRVVTEKTVLAMPEASIGLFPDVGASYFLSQLPG-------YFGEYLGLTGARIDGATMLACGLATHFV 195          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|629118330|gb|KCW83005.1| (hypothetical protein EUGRSUZ_C04388 [Eucalyptus grandis])

HSP 1 Score: 98.5969 bits (244), Expect = 2.310e-18
Identity = 73/218 (33.49%), Postives = 112/218 (51.38%), Query Frame = 0
Query:   33 NMASRASTTHYR--ILESP-------GCRRVVLTGPTGRLDQRAAESLIW---------------KLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESI----TGHSSEPSTAFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTH 221
            NM S +ST  +R  + E P       G R+V+L  P+ +L+    E + +               KL+ +E +  + AV+L+G  GKAF AG    ++I    TGH S  ++ +++   L +++AT  KP +   +G V+GGG GL + A +R+ TEK+ F +   + G   D G S+ LS+           F  YL LTGA L GE MLA G++TH
Sbjct:    2 NMQSLSSTELFRRDLTEQPVLFEEHSGVRKVILNRPS-KLNSLNLEMVHYSSASPLSAQISQMFSKLKIYEDDPTVNAVILKGN-GKAFCAGGDVFQNICSMLTGHWSFGASFYKKQLTLDHLIATYKKPLVCLINGVVMGGGAGLSMHASFRVVTEKTVFAMPEAILGIFPDVGASHFLSKLPG-------YFGEYLGLTGARLDGETMLACGLATH 210          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|953501708|emb|CEG37157.1| (mitochondrial 3-hydroxyisobutyryl-hydrolase [Plasmopara halstedii])

HSP 1 Score: 98.2117 bits (243), Expect = 3.571e-18
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 0
Query:   50 GCRRVVLTGP--TGRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPST------AFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLSRPQAGSR----------------SRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFE 241
            G R V    P     L    A  L+ +L  +E N  + A++  G  GKAF AG     ++  +  +P+T       FR   +L+Y+LAT  KP IS+ +G  +GGG+GL +  ++ ++TEK+ F +     G+  D G SYLL  P+ G R                 + Q    YLALTG  L G  ++  G++TH++  S   +L  +L    FE
Sbjct:   40 GVRTVQFNRPEKLNALTLPMALHLMHRLHKFEANKTVNAIVFSGNGGKAFCAGGDI-RALADNGKDPATRHFALDFFRHEYRLNYLLATTEKPIISFLNGVTMGGGVGLSMHGKFVVATEKTVFAMPETAIGFFPDVGASYLL--PRLGRRLVEGEDYVADVPKSQALKGQGLGTYLALTGERLKGHEVIGLGLATHYLPTSEYDTLVHQLTGFEFE 253          
BLAST of EWM28260.1 vs. NCBI_GenBank
Match: gi|1173957930|gb|OQS04367.1| (3-hydroxyisobutyryl-CoA hydrolase [Thraustotheca clavata])

HSP 1 Score: 97.8265 bits (242), Expect = 4.872e-18
Identity = 69/227 (30.40%), Postives = 103/227 (45.37%), Query Frame = 0
Query:   50 GCRRVVLTGPT--GRLDQRAAESLIWKLQAWETNYLIQAVMLQGRPGKAFSAGWMCGESITGHSSEPST------AFRRYCQLSYMLATLHKPTISWFSGDVVGGGIGLGL-ARYRISTEKSTFRVSGPVKGWILDGGLSYLLS------------RPQAGSRSRNQAFARYLALTGAVLAGEGMLAAGISTHHMKDSIAGSLHKRLADLTFEPDF---VVEDVLSE 252
            G R V    P     L+     SL  K+Q +E N  I A++ +G   KAF AG      +  +   P T       FR   +L+YMLAT+  P IS  +G  +GGG+GL +  ++ ++TEK+TF +     G+  D G SY+L             RP        Q    +LALTG  L G  +    ++TH ++      L   L +  FEP+    V +D++ E
Sbjct:   50 GIRNVTFNRPKVLNALNLPMIRSLTPKIQKFEKNPAINAIIFEGAGEKAFCAGGDI-RFLYDNGKNPETRHLALDFFREEYRLNYMLATMSTPVISIVNGITMGGGVGLSMHGKFVVATEKTTFAMPETAIGFFPDVGGSYILPRIGRKIAQQDDYRPLTDDSISGQGLGTFLALTGERLKGAEVFGVALATHFVESKEIADLRNHLVEFDFEPELRQSVRDDIIDE 275          
The following BLAST results are available for this feature:
BLAST of EWM28260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110605|gb|EWM28260.1|0.000e+0100.00mitochondrial 3-hydroxyisobutyryl- hydrolase [Nann... [more]
gi|1208514184|gb|OWM72605.1|1.020e-2033.66hypothetical protein CDL15_Pgr013073 [Punica grana... [more]
gi|702307513|ref|XP_010050119.1|1.202e-2034.78PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrol... [more]
gi|629078107|gb|KCW45305.1|1.552e-1834.97hypothetical protein EUGRSUZ_L01034 [Eucalyptus gr... [more]
gi|702508926|ref|XP_010040325.1|1.763e-1834.59PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrol... [more]
gi|950927798|ref|XP_014495258.1|2.267e-1833.16PREDICTED: probable 3-hydroxyisobutyryl-CoA hydrol... [more]
gi|1091520843|ref|XP_018722058.1|2.288e-1834.97PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1 iso... [more]
gi|629118330|gb|KCW83005.1|2.310e-1833.49hypothetical protein EUGRSUZ_C04388 [Eucalyptus gr... [more]
gi|953501708|emb|CEG37157.1|3.571e-1831.34mitochondrial 3-hydroxyisobutyryl-hydrolase [Plasm... [more]
gi|1173957930|gb|OQS04367.1|4.872e-1830.403-hydroxyisobutyryl-CoA hydrolase [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2510rna2510Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications