EWM28231.1, cds2499 (CDS) Nannochloropsis gaditana

Overview
NameEWM28231.1
Unique Namecds2499
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:542716..542767 -
Alignment locationCM002459.1:542381..542466 -
Alignment locationCM002459.1:541899..542186 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28231.1
Productferredoxin
Orig transcript idgnl|cribi|Naga_100004g151.9162.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:542716..542767 -
CM002459.1supercontigCM002459.1:542381..542466 -
CM002459.1supercontigCM002459.1:541899..542186 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0022900electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR012675Beta-grasp_dom
IPR010241Fd_pln
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|585110576|gb|EWM28231.1| (ferredoxin [Nannochloropsis gaditana])

HSP 1 Score: 290.041 bits (741), Expect = 2.798e-99
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query:    1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA
Sbjct:    1 MKVLLLSIVASALSTVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|242038653|ref|XP_002466721.1| (uncharacterized protein LOC8056764 [Sorghum bicolor] >gi|241920575|gb|EER93719.1| hypothetical protein SORBI_3001G147400 [Sorghum bicolor])

HSP 1 Score: 119.398 bits (298), Expect = 8.648e-32
Identity = 56/102 (54.90%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
             +KVTIE  DG +  + VE  +++L  ALDEG+E+PHDC+LG C+ C A+L+SG VDQ+   L D V+ QGYAL C +YP+SD TIR IPEDEL+  Q A A
Sbjct:   47 AYKVTIEH-DGASRVVEVEEDETILSRALDEGLEVPHDCKLGVCMTCPARLVSGVVDQSDGMLSDDVVAQGYALLCAAYPRSDCTIRVIPEDELLKVQLATA 147          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|1045399857|dbj|GAU18842.1| (hypothetical protein TSUD_228320 [Trifolium subterraneum])

HSP 1 Score: 119.013 bits (297), Expect = 1.172e-31
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 0
Query:   24 PR-GLSNHQS--LTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            PR G  +HQS  LT      +KV IE  +GK+ E+ VE  +++L  ALD G+ +PHDC+LG C+ C A+LISGTVDQ+   L D V+E+GYAL C SYP+SD  IR IPE+EL+  Q A A
Sbjct:   31 PRLGSGSHQSPPLTFTVRSSYKVVIEH-EGKSTELEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCVIRVIPEEELLSMQLATA 150          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|661897350|emb|CDO99062.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 118.242 bits (295), Expect = 2.135e-31
Identity = 61/132 (46.21%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   24 PRGLSNHQSLTRNGLFG--------------HKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            PR  +N  +L  +GL+               +KV+IE  +GKT E+ VE  +++L  ALD G+ +PHDC+LG C+ C A+L+SGTVDQ+   L D V+E+GYAL C SYP+SD  IR+IPE+EL+  Q A A
Sbjct:   17 PRNQANVPALQLHGLWSRPRLNRHLSCTARSYKVSIEH-EGKTTELEVEPDETILSKALDNGLPVPHDCKLGVCMTCPAQLLSGTVDQSEGMLSDDVVERGYALLCASYPRSDCKIRTIPEEELLSLQLATA 147          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|674250968|gb|KFK43733.1| (hypothetical protein AALP_AA1G165600 [Arabis alpina])

HSP 1 Score: 118.627 bits (296), Expect = 2.150e-31
Identity = 55/102 (53.92%), Postives = 75/102 (73.53%), Query Frame = 0
Query:   40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            G+KV +E  DGKT E+ VE  +++L  A+DEG+++P+DC+LG C+ C AKL++GTVDQ+   L D V+E+GYAL C SYP SD  I+ IPEDEL+  Q A A
Sbjct:   48 GYKVVVEH-DGKTTELEVEPDETILSKAIDEGLDVPYDCKLGVCMTCPAKLVTGTVDQSDGMLSDDVVERGYALLCASYPTSDCHIKMIPEDELLSLQLATA 148          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|1035898350|gb|OAY27951.1| (hypothetical protein MANES_15G029300 [Manihot esculenta])

HSP 1 Score: 117.857 bits (294), Expect = 2.953e-31
Identity = 61/122 (50.00%), Postives = 83/122 (68.03%), Query Frame = 0
Query:   20 LPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            LP+L       +SL +  +  +KV IE  +G++ E+ VE  +++L  ALD G+ +PHDC+LG C+ C AKLISGTVDQ+   L D V+E+GYAL C SYP+SD  IR+IPEDEL+  Q A A
Sbjct:   23 LPSLKLNYRAGRSL-KTTVRSYKVLIEH-EGQSTELEVEPDETILSKALDSGLPVPHDCKLGVCMTCPAKLISGTVDQSEGMLSDDVVERGYALLCASYPKSDCHIRTIPEDELLSLQLATA 142          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|351725193|ref|NP_001236060.1| (uncharacterized protein LOC100500300 [Glycine max] >gi|255629972|gb|ACU15338.1| unknown [Glycine max] >gi|734398145|gb|KHN30476.1| Ferredoxin-3, chloroplastic [Glycine soja] >gi|947130001|gb|KRH77855.1| hypothetical protein GLYMA_01G238000 [Glycine max])

HSP 1 Score: 117.857 bits (294), Expect = 3.016e-31
Identity = 61/128 (47.66%), Postives = 81/128 (63.28%), Query Frame = 0
Query:   14 STVYAFLPNLPRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            ST     P  PR L       R  +  +KV IE  DG++ E+ VE  +++L  ALD G+ +PHDC+LG C+ C A+LISG+VDQ+   L D V+E+GYAL C +YPQSD  I+ IPEDEL+  Q A A
Sbjct:   26 STASQLNPPRPRPL-------RVSVRSYKVVIEH-DGESTEVEVEPDETILSKALDSGLSVPHDCKLGVCMTCPARLISGSVDQSDGMLSDDVVERGYALLCAAYPQSDCHIKIIPEDELLSLQLATA 145          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|298712382|emb|CBJ33166.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.857 bits (294), Expect = 3.058e-31
Identity = 56/99 (56.57%), Postives = 75/99 (75.76%), Query Frame = 0
Query:   41 HKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFA 139
            H+VTIE  +G +  + V+   ++LEAALD  I+LPHDC+LG CL C +K++SG VDQ+  TL+DSV   GYALTCC+Y +SDVTIRS+ EDEL+  QF+
Sbjct:   49 HQVTIE-HEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 146          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|502159000|ref|XP_004511360.1| (PREDICTED: ferredoxin, root R-B2 [Cicer arietinum])

HSP 1 Score: 117.472 bits (293), Expect = 4.380e-31
Identity = 59/118 (50.00%), Postives = 79/118 (66.95%), Query Frame = 0
Query:   24 PRGLSNHQSLTRNGLFGHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
            PR  S  + LT      +KV IE  +G+T ++ VE  +++L  ALD G+ +PHDC+LG C+ C AKLISG+VDQ+   L D V+E+GYAL C SYP+SD   R+IPEDEL+  Q A A
Sbjct:   31 PRLGSGSRPLTVTVRSSYKVVIEH-EGQTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCHFRTIPEDELLSMQLATA 147          
BLAST of EWM28231.1 vs. NCBI_GenBank
Match: gi|357480873|ref|XP_003610722.1| (2Fe-2S ferredoxin superfamily protein [Medicago truncatula] >gi|355512057|gb|AES93680.1| 2Fe-2S ferredoxin superfamily protein [Medicago truncatula])

HSP 1 Score: 117.857 bits (294), Expect = 4.550e-31
Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   40 GHKVTIETLDGKTHEINVESYKSVLEAALDEGIELPHDCQLGTCLVCAAKLISGTVDQTGSTLDDSVMEQGYALTCCSYPQSDVTIRSIPEDELIDEQFARA 141
             +KV IE  +GKT ++ VE  +++L  ALD G+++PHDC+LG C+ C A+LISGTVDQ+   L D V+E+GYAL C SYP+SD  IR IPEDEL+  Q A A
Sbjct:   51 SYKVVIEH-EGKTTQLEVEPDETILSKALDSGLDVPHDCKLGVCMTCPARLISGTVDQSDGMLSDDVVERGYALLCASYPRSDCHIRVIPEDELLSMQLATA 151          
The following BLAST results are available for this feature:
BLAST of EWM28231.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110576|gb|EWM28231.1|2.798e-99100.00ferredoxin [Nannochloropsis gaditana][more]
gi|242038653|ref|XP_002466721.1|8.648e-3254.90uncharacterized protein LOC8056764 [Sorghum bicolo... [more]
gi|1045399857|dbj|GAU18842.1|1.172e-3152.07hypothetical protein TSUD_228320 [Trifolium subter... [more]
gi|661897350|emb|CDO99062.1|2.135e-3146.21unnamed protein product [Coffea canephora][more]
gi|674250968|gb|KFK43733.1|2.150e-3153.92hypothetical protein AALP_AA1G165600 [Arabis alpin... [more]
gi|1035898350|gb|OAY27951.1|2.953e-3150.00hypothetical protein MANES_15G029300 [Manihot escu... [more]
gi|351725193|ref|NP_001236060.1|3.016e-3147.66uncharacterized protein LOC100500300 [Glycine max]... [more]
gi|298712382|emb|CBJ33166.1|3.058e-3156.57conserved unknown protein [Ectocarpus siliculosus][more]
gi|502159000|ref|XP_004511360.1|4.380e-3150.00PREDICTED: ferredoxin, root R-B2 [Cicer arietinum][more]
gi|357480873|ref|XP_003610722.1|4.550e-3154.902Fe-2S ferredoxin superfamily protein [Medicago tr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2507rna2507Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications