EWM28304.1, cds2454 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|585110649|gb|EWM28304.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 665.996 bits (1717), Expect = 0.000e+0 Identity = 322/322 (100.00%), Postives = 322/322 (100.00%), Query Frame = 0 Query: 1 MARQCTKVSRYPHTLLSIMKWILREGIDFQPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322 MARQCTKVSRYPHTLLSIMKWILREGIDFQPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ Sbjct: 1 MARQCTKVSRYPHTLLSIMKWILREGIDFQPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|1210521613|dbj|GAX19603.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 259.225 bits (661), Expect = 5.924e-82 Identity = 132/271 (48.71%), Postives = 166/271 (61.25%), Query Frame = 0 Query: 32 EGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENP-GIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRF 301 G N F+ L+ P +E Y +EK YD P+ WMK P +P+A I+Y V I+ GQA R ++ + LA WNL LS+FS +GM+R PHL + C P YG+ + G WVQ FILSK ELIDT FIV+ KKPL FLHWYHH+TVLL+ W Y +P GIIF AMNY+VHA MYGYYFLMA+R++P W P IT MQISQMVVGVAT ECA+D+ +A +MY +YL+LFC+F R+ Sbjct: 10 NGDNLEYREFSCLY---PQVEHLYTSFEKFYDPIPLLNWMKGQPGIPVAACIIYAVSIYYGQAYFAKRDRWNWRNTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAECALDRGNNIAAFLMYGSYLFLFCQFFFSRY 277
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|1210531746|dbj|GAX09713.1| (elongation of very long chain fatty acids protein 6 [Fistulifera solaris]) HSP 1 Score: 253.062 bits (645), Expect = 1.234e-79 Identity = 125/246 (50.81%), Postives = 157/246 (63.82%), Query Frame = 0 Query: 57 EWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENP-GIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRF 301 +EK YD P+ WMK P +P+A I+Y V I+ GQA R ++ ++ LA WNL LS+FS +GM+R PHL + C P YG+ + G WVQ FILSK ELIDT FIV+ KKPL FLHWYHH+TVLL+ W Y +P GIIF AMNY+VHA MYGYYFLMA+R++P W P IT MQISQMVVGVAT ECA+D+ +A +MY +YL+LFC+F R+ Sbjct: 24 SFEKFYDPIPLLNWMKGQPGIPVAACIIYAVSIYYGQAYFAKRDRWNWRYTLAVWNLFLSVFSFVGMLRTAPHLFHNLTHLSFRDNMCLDPRTTYGSGSTGLWVQLFILSKFPELIDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPTGIIFTAMNYTVHATMYGYYFLMALRMKPKWFNPMVITAMQISQMVVGVATTIVSYYYFLTDAECALDRGNNIAAFLMYGSYLFLFCQFFFSRY 269
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|585102147|gb|EWM21810.1| (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 249.21 bits (635), Expect = 3.626e-77 Identity = 133/293 (45.39%), Postives = 177/293 (60.41%), Query Frame = 0 Query: 30 QPEGPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRK-----PFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPL-YGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA--TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKA 314 PE P F Q+FQ +P +EPFYMEWEK +D S ++ ++ +PI ILY+ + G+ ++ R+ P +L A+WN L+ FS++G RVVPH ++L K C AP+ YG+ A G WV F +SKL EL+DT +VL+ K FLHWYHHVTVLL+TWF Y+ NPGI FVAMNYSVHA+MY YYFLM +R+ P W P +IT+ QI QM+VGV +AF+ + CA+ + L+ C MY+TYLY F F + RF K APG A Sbjct: 26 DPESP----VRFVQVFQSLPWLEPFYMEWEKNFDVSSSFQVIRDNEALPIVATILYLSFLIEGKKYIERRRREGKGPINLGLFPAFWNAFLAAFSVLGATRVVPHFLFLFTHKDFKTTVCEAPDKAGYGDGAAGMWVMLFTVSKLFELVDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGIYFVAMNYSVHALMYSYYFLMELRLWPKWFNPMWITMAQILQMLVGVGITVSAFFFSR---DPSCALVRGLIPWCAAMYATYLYFFVLFFLERFFPA-FKPAAPGAA 310
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|585112414|gb|EWM29833.1| (elongation of very long chain fatty acids protein 6 [Nannochloropsis gaditana]) HSP 1 Score: 246.128 bits (627), Expect = 1.760e-76 Identity = 140/288 (48.61%), Postives = 178/288 (61.81%), Query Frame = 0 Query: 41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRK-----PFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVG-FWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA-TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKA 321 F Q+FQ IPA+EPFY EWEK +D S + ++ WVPI VILY+ + G+ ++ RK P +L + A WN L+LFSI G +RVVPH ++L K C AP+ WV F +SK+ EL+DT +VL+ K FLHWYHHVTVLL+TWF Y+ NPG+ F+AMNY+VHA+MY YYFLM +R+ P WL P FITLMQISQM+VGV TAA Y +A CAV +DL+ C MY+TYLY F EF V RF+ K T K + A Sbjct: 27 FVQVFQAIPALEPFYTEWEKHFDVSAPFRAIRDSKWVPIMAVILYLSFLVEGKKYIERRKKEGKGPVNLGYFPALWNGFLALFSIAGALRVVPHFLFLFTHKDFKETVCEAPDAAGYGDGAAGLWVMLFTVSKVFELMDTVILVLKGKDPMFLHWYHHVTVLLYTWFSYSARNPGLYFIAMNYTVHAVMYSYYFLMELRLWPKWLSPVFITLMQISQMLVGVGVTAAAY--SYQADPSCAVVRDLIPWCAAMYATYLYFFVEFFVERFLAASTKRTPVSKLASKDIGA 312
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|256750562|gb|ACV21066.1| (fatty acid elongase [Nannochloropsis oculata]) HSP 1 Score: 245.743 bits (626), Expect = 3.142e-76 Identity = 132/286 (46.15%), Postives = 171/286 (59.79%), Query Frame = 0 Query: 41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSV-PWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYT-HENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAA--FYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322 FTQLFQ P ++P Y ++EK + +S ++ + P +P+A +Y + I G +M +R + K LA WNL LS+FS GM+R VPHL++ AT C P YG A G WV FI SK+ EL+DT FIV RK LQFLHWYHH+TVLLF W Y + G+ FVAMNYSVHAIMY YY+L A+ P W+ P IT+ QISQM+VGV A FY + E C V + + A +MY +YLYLFC+F VRRF+ G K K+ V M + Sbjct: 33 FTQLFQHYPVLDPLYTQYEKNFYASTYVKFAQDTWPVLPLALCGMYALMIIVGTKVMVSRPKHEWKTALACWNLMLSIFSFCGMIRTVPHLLHNVATLPFKDTICRHPAETYGEGACGMWVMLFIFSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAIMYAYYYLTAINAWPKWIPPSIITVAQISQMIVGVGICASSFYFLYTDP-EHCQVKRQNVYAGALMYGSYLYLFCDFFVRRFLRGGKPRLGEEKSAVLTMAKK 317
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|224008873|ref|XP_002293395.1| (long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335] >gi|220970795|gb|EED89131.1| long chain fatty acid elongase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 244.588 bits (623), Expect = 4.072e-76 Identity = 127/273 (46.52%), Postives = 165/273 (60.44%), Query Frame = 0 Query: 33 GPNSRGSTFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENP-GIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA---TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRF 301 G N G + + + P + Y+ +E+ YD WM+ P +PI + YVV I G+A MK+R + + LA WNL+LSLFS +G +R P L Y T L C P LYG+ + G WVQ FILSK EL+DT FIV+ KKPL FLHWYHH+TVLL+ W Y +P G+ FV MNYSVHA+MYGYYFLMAV+ RP W P F+T MQ+SQM +GV A +Y G+ C + ++ VA VMY +Y YLF +F V R+ Sbjct: 14 GTNGLGVHYAEFSCLHPLLGATYLPFERFYDPVATLTWMQDRPMIPIIACVAYVVLIVLGRAYMKDRPAWSWRRILAVWNLSLSLFSWIGAIRTAPQLYYNLTTYSLRDNLCDDPAALYGSGSTGLWVQLFILSKFPELLDTFFIVIHKKPLIFLHWYHHITVLLYCWHSYVTTSPSGLFFVVMNYSVHAVMYGYYFLMAVKFRPKWFNPMFVTFMQLSQMFIGVGVTIVAFYYYSNPILGKTCHIRKENNVAAFVMYGSYFYLFAQFFVARY 286
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|585111978|gb|EWM29442.1| (fatty-acyl [Nannochloropsis gaditana]) HSP 1 Score: 245.743 bits (626), Expect = 1.006e-75 Identity = 131/286 (45.80%), Postives = 173/286 (60.49%), Query Frame = 0 Query: 41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSV-PWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYT-HENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA--TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322 FTQLFQ P + PFY E+EK + +S + ++ P +P+A +Y + I G +M++R + K LA WNL LS+FS GM+R VPHL++ T C P YG A G WV FI SK+ EL+DT FIV RK LQFLHWYHH+TVLLF W Y + G+ FVAMNYSVHA+MY YY+L A++ PSW+ P IT+ QISQM+VGV A+FY + E C V + + +MY +YLYLFC+F VRRF+ G K ++ V M + Sbjct: 31 FTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLHNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDP-EHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKK 315
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|553192576|ref|XP_005855601.1| (fatty-acyl [Nannochloropsis gaditana CCMP526] >gi|422293464|gb|EKU20764.1| fatty-acyl [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 243.817 bits (621), Expect = 1.518e-75 Identity = 131/286 (45.80%), Postives = 172/286 (60.14%), Query Frame = 0 Query: 41 FTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSV-PWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYT-HENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVA--TAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSKMKAQ 322 FTQLFQ P + PFY E+EK + +S + ++ P +P+A +Y + I G +M++R + K LA WNL LS+FS GM+R VPHL+ T C P YG A G WV FI SK+ EL+DT FIV RK LQFLHWYHH+TVLLF W Y + G+ FVAMNYSVHA+MY YY+L A++ PSW+ P IT+ QISQM+VGV A+FY + E C V + + +MY +YLYLFC+F VRRF+ G K ++ V M + Sbjct: 31 FTQLFQHYPVLSPFYTEYEKNFHASSYVNFAQNTWPALPLALCGIYGLMIVVGTKVMESRPKHEWKTALACWNLLLSVFSFCGMLRTVPHLLQNVTTLPFKDTICRHPAETYGEGACGLWVMLFIYSKVPELVDTVFIVFRKSKLQFLHWYHHITVLLFCWHSYAVTSSTGLYFVAMNYSVHAVMYAYYYLTAIKAWPSWIPPSIITVAQISQMMVGVGICVASFYYLYTDP-EHCEVKPQNVYSGALMYGSYLYLFCDFFVRRFLRGGKPRLGEERSAVLTMTKK 315
BLAST of EWM28304.1 vs. NCBI_GenBank
Match: gi|585107618|gb|EWM25755.1| (fatty-acyl elongase [Nannochloropsis gaditana]) HSP 1 Score: 242.276 bits (617), Expect = 1.131e-74 Identity = 121/279 (43.37%), Postives = 166/279 (59.50%), Query Frame = 0 Query: 40 TFTQLFQVIPAIEPFYMEWEKKYDSSPVYEWMKSVPWVPIAGVILYVVGIFGGQALMKNRKPFDLKWPLAYWNLALSLFSIMGMVRVVPHLIYLTATKGLGVVACGAPEPLYGNAAVGFWVQAFILSKLAELIDTAFIVLRKKPLQFLHWYHHVTVLLFTWFCYTHENPGIIFVAMNYSVHAIMYGYYFLMAVRVRPSWLKPQFITLMQISQMVVGVATAAFYIMKIRAGEECAVDQDLLVACGVMYSTYLYLFCEFAVRRFILGPKKETAPGKAGVSK 318 TF Q +Q+ P EPFY EK++D P Y ++ + W+P+ +ILY + + +++P LAYWNL L+ FSI+G +R+VPHL++ T C PE + G+ A G W F LSKL EL+DT F+ L+ + FLHWYHHVTVL FTW Y+ +PG+ F+AMNY+VHA+MY YYFLMA++ +P WL P +IT +QI QMV GV + + R C V +L V+Y +YLYLF EF V+RF P + P V K Sbjct: 36 TFLQFWQLFPWSEPFYTRLEKEFDVRPWYLFVHANGWLPVVSIILYAAMVLLLPPI-TSKRPVKCDTALAYWNLLLAAFSILGALRIVPHLLWFLTTHSFKETVCTPPERMNGDGASGLWCLLFTLSKLVELVDTMFVCLKGRKPIFLHWYHHVTVLSFTWAAYSARHPGMYFIAMNYTVHAVMYSYYFLMAIKAKPKWLNPIYITFLQIFQMVAGVIITVYGFIYARDPSTCGVVPSVLYFQSVIYGSYLYLFLEFLVKRFFC-PPQSVPPASRPVGK 312 The following BLAST results are available for this feature:
BLAST of EWM28304.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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