EWM28196.1, cds2451 (CDS) Nannochloropsis gaditana

Overview
NameEWM28196.1
Unique Namecds2451
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:429882..430180 -
Alignment locationCM002459.1:429185..429761 -
Alignment locationCM002459.1:428025..429074 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28196.1
Productglucose-methanol-choline oxidoreductase
Orig transcript idgnl|cribi|Naga_100004g95.9127.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:429882..430180 -
CM002459.1supercontigCM002459.1:429185..429761 -
CM002459.1supercontigCM002459.1:428025..429074 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0000166nucleotide binding
GO:0050660flavin adenine dinucleotide binding
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: INTERPRO
TermDefinition
IPR007867GMC_OxRtase_C
IPR012132GMC_OxRdtase
IPR000172GMC_OxRdtase_N
Homology
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|585110541|gb|EWM28196.1| (glucose-methanol-choline oxidoreductase [Nannochloropsis gaditana])

HSP 1 Score: 1313.9 bits (3399), Expect = 0.000e+0
Identity = 641/641 (100.00%), Postives = 641/641 (100.00%), Query Frame = 0
Query:    1 MQGANLICALGRPKGALWQRLSLPTRDLLLADRISTGSSSPFSSFSSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAAHGTAADKP 641
            MQGANLICALGRPKGALWQRLSLPTRDLLLADRISTGSSSPFSSFSSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAAHGTAADKP
Sbjct:    1 MQGANLICALGRPKGALWQRLSLPTRDLLLADRISTGSSSPFSSFSSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAAHGTAADKP 641          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|1197266891|ref|WP_086510929.1| (choline dehydrogenase [Halomonas desiderata] >gi|1194961237|gb|OUE39618.1| choline dehydrogenase [Halomonas desiderata SP1])

HSP 1 Score: 627.091 bits (1616), Expect = 0.000e+0
Identity = 317/583 (54.37%), Postives = 396/583 (67.92%), Query Frame = 0
Query:   50 YDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGS--ALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            +DYIVVG G+AGCL+ANRLS +P  +VLL+EAGG D    +VHIPVGYL+ I+NPR DWCF+TEP  GL+GRSL YPRGK LGGCSSINGM+Y+RGQA DYDGWA++  +D+                        W W   LPDF K ED           R  EGGD    +       HG GGEWR+EKQRL W+VLD F +A  + G+P+  DFN G+N G  YF VNQR GWRWN +KA+L P+  +R N T+     V ++L D + G   A GVE  R+    G V R  A  E ILAAGA+GSP LLQLSG+GP A L    +P+ H L GVG NLQDHLQ+R V++++G  TLN   ASW G+ K+G+EYL  R GP+SMAPSQ+ +F +S      P++E+HVQPLSL+ FG+PLH +PA TASVC+L PTSRGSV +++RDPR  P I PNYL+T +DR VAA +LR+TRR+     AF  ++PEE  PG+  QS  +L   AG +GTTIFHP GT KMGR DDP+AV+D++LRVRG+E LRV D S MP ITSGNT+SPTLMIAEKA+ ++
Sbjct:    6 FDYIVVGAGTAGCLLANRLSADPANRVLLIEAGGRDN-YHWVHIPVGYLYCINNPRTDWCFKTEPDKGLNGRSLIYPRGKTLGGCSSINGMLYLRGQARDYDGWAELVGDDD------------------------WRWENCLPDFMKHEDHY---------RLDEGGD----ADAAHRDYHGHGGEWRIEKQRLKWEVLDDFAEAAVQAGVPRTRDFNRGDNEGVDYFEVNQRDGWRWNAAKAFLRPVCEKRDNFTLWHSTQVHRLLFDTAEGKPRASGVELERN----GTVSRVSAKREVILAAGAIGSPQLLQLSGIGPAALLAEHGIPLVHELPGVGENLQDHLQIRSVYKVTGAKTLNTLAASWLGKAKIGMEYLLRRTGPMSMAPSQLCIFTRSSDEYEHPNIEYHVQPLSLEAFGQPLHDYPAITASVCNLNPTSRGSVRIKSRDPRQAPAIAPNYLSTEEDRRVAADSLRVTRRIA-EQPAFAKYRPEEVKPGVQYQSDEDLARLAGDIGTTIFHPVGTAKMGRGDDPMAVVDSRLRVRGVEGLRVVDASVMPTITSGNTNSPTLMIAEKAAAWI 545          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|759953202|ref|WP_043637713.1| (choline dehydrogenase [Chromobacterium haemolyticum])

HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0
Identity = 339/584 (58.05%), Postives = 396/584 (67.81%), Query Frame = 0
Query:   47 STTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            + T+DYI+VG GSAGCL+ANRLS NP ++VLLLEAGG+D   P++HIPVGYL+ I NPR DWC +T P PGL GRSL YPRGK+LGGCSSINGMIYMRGQA DYDGWA          G  G                 WSW  VLPDF + ED    A  Q                      HG GGEWRVE+QRLSW++LD FRDA E+ GI  V+DFN G+N G  YF VNQRGG RWNT+KA+L P   +R NLTVLTH     +LL+  +G A+G+ F +         R     E ILAAGAVGSP LLQ SG+GP A L+   V V+HAL GVGANLQDHLQLRMVF++SG  TLN    SW G++ MG EYLW R GPL+MAPSQ+G F KS   + R +LE+HVQPLSL+RFGEPLHPFPAFTASVC L+P SRG V +      A P IQPNYL+  +DRAVA  ALRLTRR+V  + A   ++PEEY PG+A QS  EL  AAGR+GTTIFHP GTCKMG+  D  AV+DA+LRV G+  LRV D S MP ITSGNT+SPTLMIAEKAS  +
Sbjct:    5 AETFDYIIVGAGSAGCLLANRLSRNPRLRVLLLEAGGEDN-YPWIHIPVGYLYCIGNPRTDWCLRTAPEPGLGGRSLNYPRGKVLGGCSSINGMIYMRGQAADYDGWAA--------QGCPG-----------------WSWDEVLPDFLRMEDHFDSARAQ----------------------HGHGGEWRVERQRLSWEILDAFRDAAEQSGIAPVDDFNRGDNAGCGYFEVNQRGGLRWNTAKAFLRPAR-QRPNLTVLTHAEAETLLLE--DGRAIGIAFLQQRQRWQARCRG----EIILAAGAVGSPLLLQRSGIGPAALLQEHGVAVRHALPGVGANLQDHLQLRMVFKVSGARTLNQLANSWTGKLAMGWEYLWRRSGPLAMAPSQLGAFAKSGPEQPRANLEYHVQPLSLERFGEPLHPFPAFTASVCDLRPLSRGRVAIGGAGLDAAPLIQPNYLSHPQDRAVAVAALRLTRRIV-AAPALTRYRPEEYLPGLAAQSDEELAAAAGRIGTTIFHPVGTCKMGQDTD--AVVDARLRVHGLSGLRVADASIMPSITSGNTNSPTLMIAEKASRMI 530          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|498315346|ref|WP_010629502.1| (choline dehydrogenase [Halomonas sp. KM-1])

HSP 1 Score: 625.55 bits (1612), Expect = 0.000e+0
Identity = 319/589 (54.16%), Postives = 395/589 (67.06%), Query Frame = 0
Query:   45 FSSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGS---ALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
             +   +DYIVVG G+AGCL+ANRLS +P  +VLL+EAGG D    +VHIPVGYL+ I+NPR DWCF+TEP  GL+GRSL YPRGK LGGCSSINGM+Y+RGQA DYDGWA++  +D+                        W W   LPDF K ED           R  EGGD    +       HG GGEWRVEKQRL W+VLD F +A  E GIP+  DFN G+N G  YF VNQR GWRWN +KA+L P+  +R+N T+     V ++L D        A GVE  R+    G V R  A  E ILAAGA+GSP LLQLSG+GP A L    +P+ H L GVG NLQDHLQ+R V++++G  TLN   ASW G+ K+G+EYL  R GP+SMAPSQ+ +F +S      P++E+HVQPLSL+ FG+PLH +PA TASVC+L PTSRGSV +++RDPR  P I PNYL+T +DR VAA +LR+TRR+     AF  ++PEE  PG+  QS  +L   AG +GTTIFHP GT KMGR DDP+AV+D+ LRVRG+E LRV D S MP ITSGNT+SPTLMIAEKA+ ++
Sbjct:    1 MAEQEFDYIVVGAGTAGCLLANRLSADPANRVLLIEAGGRDN-YHWVHIPVGYLYCINNPRTDWCFKTEPDKGLNGRSLIYPRGKTLGGCSSINGMLYLRGQARDYDGWAELVGDDD------------------------WRWENCLPDFMKHEDHY---------RLDEGGD----ADAAHRDYHGHGGEWRVEKQRLKWEVLDDFAEAAVEAGIPRTRDFNRGDNEGVDYFEVNQRDGWRWNAAKAFLRPVCEKRSNFTLWHSAQVHRLLFDTDESGKPRATGVELERN----GSVSRVKAKREVILAAGAIGSPQLLQLSGIGPAALLAEHGIPLVHELPGVGENLQDHLQIRSVYKVTGAKTLNTLAASWLGKAKIGMEYLLRRTGPMSMAPSQLCIFTRSSDEYEHPNIEYHVQPLSLEAFGQPLHDYPAITASVCNLNPTSRGSVRIKSRDPRQAPAIAPNYLSTEEDRRVAADSLRVTRRIA-EQPAFAKYRPEEVKPGVQYQSDEDLARLAGDIGTTIFHPVGTAKMGRDDDPMAVVDSHLRVRGVEGLRVVDASVMPTITSGNTNSPTLMIAEKAAAWI 546          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|515278972|ref|WP_016836179.1| (GMC family oxidoreductase [Herbaspirillum lusitanum])

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 321/590 (54.41%), Postives = 409/590 (69.32%), Query Frame = 0
Query:   46 SSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGS--ALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFLHAA 633
            S+  YDYI+VGGG+AGC++ANRLS +  +KVLL+EAG  D  + ++HIPVGYL+ I+NPR DW ++TE   GL+GRSL YPRGK+LGGCSSINGMIYMRGQ  DY+ WAQ+  +D                         W W  VLP F KSED                   YK S    D  HG GGEWRVEKQRLSW++LD FRDA  E GIPK++DFN G+N GSSYF VNQ+ G RWN SKA+L P M +  NL V+T  HV ++ +++ +     +GVEF     G G    A A  ETILAAGAVGSPH+LQLSG+GP A L+   +PV   L+GVG NLQDHLQ+RM F++ G+ TLN    +W+G++ +GV+Y   + GP+SMAPSQ+GVF KS+A++   +LE+HVQPLSL++FG+PLHPFPAFTASVC+L+PTSRG + L + D    P+I  NYL+T  DR VAA +L+LTR++V  + A   ++P+E  PG+  QS+ EL +AAG +GTTIFHP GTCKMGRADD  AV+D++LRVRG+  LRV D S MP ITSGNT+SPTLMIAEKA++ + AA
Sbjct:    3 SAGKYDYIIVGGGTAGCVLANRLSRDAGIKVLLIEAGAKDDYL-WIHIPVGYLYCINNPRTDWLYRTEADVGLNGRSLIYPRGKVLGGCSSINGMIYMRGQERDYNEWAQLSGDDS------------------------WRWDRVLPLFRKSEDH------------------YKGS----DEFHGAGGEWRVEKQRLSWEILDAFRDAAAETGIPKIDDFNRGHNEGSSYFDVNQKRGIRWNASKAFLKPAM-KNGNLDVMTGSHVKRLRIEQRDTGPVCVGVEF----TGGGSEWYAEATSETILAAGAVGSPHILQLSGIGPAALLQQHQIPVVKDLAGVGENLQDHLQIRMAFKVKGVKTLNMMAGNWYGKMMIGVQYAMFQSGPMSMAPSQLGVFAKSDASQSSANLEYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHIRLGSNDGALAPKITLNYLSTEADRKVAADSLKLTRKIV-SAPALRKYQPDECKPGVEYQSEEELYKAAGEIGTTIFHPVGTCKMGRADDAQAVVDSQLRVRGVGGLRVVDASVMPTITSGNTNSPTLMIAEKAAELIRAA 539          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|1174878386|ref|WP_081555421.1| (choline dehydrogenase [Chromobacterium haemolyticum] >gi|1173998224|gb|OQS40766.1| choline dehydrogenase [Chromobacterium haemolyticum])

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 338/584 (57.88%), Postives = 396/584 (67.81%), Query Frame = 0
Query:   47 STTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            + T+DYI+VG GSAGCL+ANRLS NP ++VLLLEAGG+D   P++HIPVGYL+ I NPR DWC +T P PGL GRSL +PRGK+LGGCSSINGMIYMRGQA DYDGWA          G  G                 WSW  VLPDF + ED    A  Q                      HG GGEWRVE+QRLSW++LD FRDA E+ GI  V+DFN G+N G  YF VNQRGG RWNT+KA+L P   +R NLTVLTH     +LL+  +G A+G+ F +         R     E ILAAGAVGSP LLQ SG+GP A L+   V V+HAL GVGANLQDHLQLRMVF++SG  TLN    SW G++ MG EYLW R GPL+MAPSQ+G F KS   + R +LE+HVQPLSL+RFGEPLHPFPAFTASVC L+P SRG V +      A P IQPNYL+  +DRAVA  ALRLTRR+V  + A   ++PEEY PG+A QS  EL  AAGR+GTTIFHP GTCKMG+  D  AV+DA+LRV G+  LRV D S MP ITSGNT+SPTLMIAEKAS  +
Sbjct:    5 AETFDYIIVGAGSAGCLLANRLSRNPRLRVLLLEAGGEDN-YPWIHIPVGYLYCIGNPRTDWCLRTAPEPGLGGRSLNHPRGKVLGGCSSINGMIYMRGQAADYDGWAA--------QGCPG-----------------WSWDEVLPDFLRMEDHFDSARAQ----------------------HGHGGEWRVERQRLSWEILDAFRDAAEQSGIAPVDDFNRGDNAGCGYFEVNQRGGLRWNTAKAFLRPAR-QRPNLTVLTHAEAETLLLE--DGRAIGIAFLQQRQRWQARCRG----EIILAAGAVGSPLLLQRSGIGPAALLQEHGVAVRHALPGVGANLQDHLQLRMVFKVSGARTLNQLANSWTGKLAMGWEYLWRRSGPLAMAPSQLGAFAKSGPEQPRANLEYHVQPLSLERFGEPLHPFPAFTASVCDLRPLSRGRVAIGGAGLDAAPLIQPNYLSHPQDRAVAVAALRLTRRIV-AAPALTRYRPEEYLPGLAAQSDEELAAAAGRIGTTIFHPVGTCKMGQDTD--AVVDARLRVHGLSGLRVADASIMPSITSGNTNSPTLMIAEKASRMI 530          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|1090760917|emb|SEF91047.1| (choline dehydrogenase [Halomonas daqingensis])

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 316/588 (53.74%), Postives = 397/588 (67.52%), Query Frame = 0
Query:   45 FSSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGS--ALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
             +   +DYIVVG G+AGCL+ANRLS +P  +VLL+EAGG D    +VHIPVGYL+ I+NPR DWCF+TEP  GL+GRSL YPRGK LGGCSSINGM+Y+RGQA DYDGWA++  +D+                        W W   LPDF K ED           R  EGGD    +       HG GGEWR+EKQRL W+VLD F +A  + GIP+  DFN G+N G  YF VNQR GWRWN +KA+L P+  +R+N T+     V ++L D + G   A GVE  R+    G + R  A  E ILAAGA+GSP LLQLSG+GP A L    +P+ H L GVG NLQDHLQ+R V++++G  TLN   ASW G+ K+G+EYL  R GP+SMAPSQ+ +F +S      P++E+HVQPLSL+ FG+PLH +PA TASVC+L PTSRGSV +++RDPR  P I PNYL+T +DR VAA +LR+TRR+     AF  ++PEE  PG+  QS  +L   AG +GTTIFHP GT KMG  DDP+AV+D++LRVRG+E LRV D S MP ITSGNT+SPTLMIAEKA+ ++
Sbjct:    1 MAEQEFDYIVVGAGTAGCLLANRLSADPANRVLLIEAGGRDN-YHWVHIPVGYLYCINNPRTDWCFKTEPDKGLNGRSLIYPRGKTLGGCSSINGMLYLRGQARDYDGWAELVGDDD------------------------WRWENCLPDFMKHEDHY---------RLDEGGD----ADAAHRDYHGHGGEWRIEKQRLKWEVLDDFAEAAVQAGIPRTRDFNRGDNEGVDYFEVNQRDGWRWNAAKAFLRPVCEKRSNFTLWHSTQVHRLLFDTAEGKPRASGVELERN----GTISRVSAKREVILAAGAIGSPQLLQLSGIGPAALLAEHGIPLVHELPGVGENLQDHLQIRSVYKVTGAKTLNTLAASWLGKAKIGMEYLLRRTGPMSMAPSQLCIFTRSSDEYEHPNIEYHVQPLSLEAFGQPLHDYPAITASVCNLNPTSRGSVRIKSRDPRHAPAIAPNYLSTEEDRRVAADSLRVTRRIA-EQPAFAKYRPEEVKPGVQYQSDEDLARLAGDIGTTIFHPVGTAKMGGDDDPMAVVDSRLRVRGVEGLRVVDASVMPTITSGNTNSPTLMIAEKAAAWI 545          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|860399058|ref|WP_048412024.1| (choline dehydrogenase [Chromobacterium sp. LK1] >gi|857253771|gb|KMN29709.1| choline dehydrogenase [Chromobacterium sp. LK1])

HSP 1 Score: 624.009 bits (1608), Expect = 0.000e+0
Identity = 339/584 (58.05%), Postives = 395/584 (67.64%), Query Frame = 0
Query:   47 STTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            + T+DYI+VG GSAGCL+ANRLS NP ++VLLLEAGG+D   P++HIPVGYL+ I NPR DWC +T P PGL GRSL YPRGK+LGGCSSINGMIYMRGQA DYDGWA          G  G                 WSW  VLPDF + ED    A  Q                      HG GGEWRVE+QRLSW++LD FRDA E+ GI  V+DFN G+N G  YF VNQRGG RWNT+KA+L P   +R NLTVLTH     +LL+  +G A+G+ F +         R     E ILAAGAVGSP LLQ SG+GP A L+   V V+HAL GVGANLQDHLQLRMVF++SG  TLN    SW G++ MG EYLW R GPL+MAPSQ+G F KS   + R +LE+HVQPLSL+RFGEPLHPFPAFTASVC L+P SRG V +      A P IQPNYL+  +DRAVA  ALRLTRR+V  + A   ++PEEY PG A QS  EL  AAGR+GTTIFHP GTCKMG+  D  AV+DA+LRV G+  LRV D S MP ITSGNT+SPTLMIAEKAS  +
Sbjct:    5 ADTFDYIIVGAGSAGCLLANRLSRNPRLRVLLLEAGGEDN-YPWIHIPVGYLYCIGNPRTDWCLRTAPEPGLGGRSLNYPRGKVLGGCSSINGMIYMRGQAADYDGWAA--------QGCPG-----------------WSWDEVLPDFLRMEDHFDSARAQ----------------------HGHGGEWRVERQRLSWEILDAFRDAAEQSGIAPVDDFNRGDNAGCGYFEVNQRGGLRWNTAKAFLRPAR-QRPNLTVLTHAEAETLLLE--DGRAIGIAFLQQRQRWQARCRG----EIILAAGAVGSPLLLQRSGIGPAALLQEHGVAVRHALPGVGANLQDHLQLRMVFKVSGARTLNQLANSWTGKLAMGWEYLWRRSGPLAMAPSQLGAFAKSGPEQPRANLEYHVQPLSLERFGEPLHPFPAFTASVCDLRPLSRGRVAIGGAGLDAAPLIQPNYLSHPQDRAVAVTALRLTRRIV-AAPALTRYRPEEYLPGPAAQSDEELAAAAGRIGTTIFHPVGTCKMGQDTD--AVVDARLRVHGLSGLRVADASIMPSITSGNTNSPTLMIAEKASRMI 530          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|517929863|ref|WP_019100071.1| (MULTISPECIES: hypothetical protein [Chromobacterium] >gi|1173994904|gb|OQS37473.1| choline dehydrogenase [Chromobacterium haemolyticum])

HSP 1 Score: 623.624 bits (1607), Expect = 0.000e+0
Identity = 338/584 (57.88%), Postives = 396/584 (67.81%), Query Frame = 0
Query:   47 STTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSALGVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            + T+DYI+VG GSAGCL+ANRLS NP  +VLLLEAGG+D   P++HIPVGYL+ I NPR DWC +T P PGL GRSL YPRGK+LGGCSSINGMIYMRGQA DYDGWA          G  G                 WSW  VLPDF + ED    A  Q                      HG GGEWRVE+QRLSW++LD FRDA E+ GI  V+DFN G+N G  YF VNQRGG RWNT+KA+L P   +R NLTVLTH     +LL+  +G A G+ F +         R     E ILAAGAVGSP LLQ SG+GP A L+   V V+HAL+GVGANLQDHLQLRMVF++SG  TLN    SW G++ MG EYLW R GPL+MAPSQ+G F KS+  + R +LE+HVQPLSL+RFGEPLHPFPAFTASVC L+P SRG + +      A P IQPNYL+  +DRAVA  ALRLTRR+V  + A   ++PEEY PG+A QS  EL  AAGR+GTTIFHP GTCKMG+  D  AV+DA+LRV G+  LRV D S MP ITSGNT+SPTLMIAEKAS  +
Sbjct:    5 ADTFDYIIVGAGSAGCLLANRLSLNPRHRVLLLEAGGEDN-YPWIHIPVGYLYCIGNPRTDWCLRTAPEPGLGGRSLNYPRGKVLGGCSSINGMIYMRGQAADYDGWAA--------QGCPG-----------------WSWDEVLPDFLRMEDHFDSARAQ----------------------HGHGGEWRVERQRLSWEILDAFRDAAEQSGIAPVDDFNRGDNAGCGYFEVNQRGGLRWNTAKAFLRPAR-QRPNLTVLTHAEAETLLLE--DGRAAGMVFLQHRQRWQARCRG----EIILAAGAVGSPLLLQRSGIGPAALLQEHGVAVRHALAGVGANLQDHLQLRMVFKVSGARTLNQLANSWAGKLAMGWEYLWRRSGPLAMAPSQLGAFAKSDVEQPRANLEYHVQPLSLERFGEPLHPFPAFTASVCDLRPLSRGRIAIGGAGLDAAPLIQPNYLSHPQDRAVAVAALRLTRRIV-AAPALTRYRPEEYLPGLAAQSDEELAAAAGRIGTTIFHPVGTCKMGQDTD--AVVDARLRVHGLSGLRVADASIMPSITSGNTNSPTLMIAEKASRMI 530          
BLAST of EWM28196.1 vs. NCBI_GenBank
Match: gi|930613339|ref|WP_054265458.1| (choline dehydrogenase [Janthinobacterium sp. CG23_2] >gi|955155333|emb|CUI06366.1| Choline dehydrogenase [Janthinobacterium sp. CG23_2] >gi|962729181|emb|CUU30152.1| Choline dehydrogenase [Janthinobacterium sp. CG23_2])

HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0
Identity = 313/587 (53.32%), Postives = 409/587 (69.68%), Query Frame = 0
Query:   46 SSTTYDYIVVGGGSAGCLVANRLSENPHVKVLLLEAGGDDRRIPFVHIPVGYLWSISNPRVDWCFQTEPVPGLHGRSLAYPRGKILGGCSSINGMIYMRGQAEDYDGWAQIFAEDETRVGAKGANVKRKESAKDGENGEVWSWRGVLPDFTKSEDFAAGASIQEVERGSEGGDLYKSSPPKQDAIHGVGGEWRVEKQRLSWKVLDTFRDACEEQGIPKVEDFNGGNNFGSSYFHVNQRGGWRWNTSKAWLHPIMGRRANLTVLTHVHVLKVLLDKSNGSAL--GVEFARSEVGTGVVERAYAGLETILAAGAVGSPHLLQLSGVGPPAPLRSADVPVKHALSGVGANLQDHLQLRMVFRISGLPTLNDEYASWWGRVKMGVEYLWDRRGPLSMAPSQVGVFCKSEATRRRPDLEFHVQPLSLDRFGEPLHPFPAFTASVCHLQPTSRGSVLLRNRDPRAPPRIQPNYLATAKDRAVAARALRLTRRLVLGSRAFLPFKPEEYAPGIACQSQAELEEAAGRVGTTIFHPAGTCKMGRADDPLAVLDAKLRVRGIERLRVCDTSAMPVITSGNTSSPTLMIAEKASDFL 630
            S+  YDYI+VGGG+AGC++ANRL+      VLL+EAGG D  + ++HIPVGYL  I NPR DW ++TEP  GL+GRSL YPRGK+LGG SSINGMIYMRGQ+ DYD WA++                       G+ G  WSW  VLP F KSED+  GAS                       +HG GGEWRVEKQRLSW++LD FRDA E+ GI K EDFNGG+N G +YF VNQ+ G RWNT+KA+L P   +R NLT++T  HV ++++D +    +  GVEF     G G    A A  ET+L AGAVGSP +LQLSG+GP A LR A + ++    GVG NLQDHLQLRM++++S   TLN   ASW+G++K+G+EY   + GP+SMAPSQ+G F +S+  +  P+L++HVQPLSL++FG+PLHPFPAFTASVC+L+PTSRG V + + D  A P+I PNYL+T +DR  AA AL LTR++V  + A   + P+E+ PG+A +++ EL EAA ++GTTIFHP GTCKMGRA DP+AV+D+ LRV G+++LRV D S MP+ITSGNT+SPT+MIAE+A++ +
Sbjct:    3 SAGEYDYIIVGGGTAGCVLANRLTRRRDTTVLLIEAGGRDDYV-WIHIPVGYLHCIGNPRTDWLYKTEPDAGLNGRSLIYPRGKVLGGSSSINGMIYMRGQSHDYDHWAEL----------------------TGDTG--WSWDKVLPLFKKSEDYHGGAS----------------------ELHGHGGEWRVEKQRLSWQLLDAFRDAAEQTGIRKTEDFNGGDNEGCNYFDVNQKRGIRWNTAKAFLKP-AAKRDNLTIMTGCHVERLIIDDTEQGKVCRGVEF----TGGGTAFTATAIRETVLTAGAVGSPQILQLSGIGPSALLRDAGIALQVDAPGVGDNLQDHLQLRMIYKVSNARTLNTTAASWFGKMKIGIEYAMFQSGPMSMAPSQLGAFARSDPGQATPNLQYHVQPLSLEKFGDPLHPFPAFTASVCNLRPTSRGHVRIASADSYAAPKITPNYLSTEQDRKTAAAALTLTRKIV-AAPAMARYAPQEFKPGMAFRTEEELAEAASQIGTTIFHPVGTCKMGRAGDPMAVVDSALRVNGVQKLRVVDASVMPLITSGNTNSPTIMIAERAAELI 536          
The following BLAST results are available for this feature:
BLAST of EWM28196.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110541|gb|EWM28196.1|0.000e+0100.00glucose-methanol-choline oxidoreductase [Nannochlo... [more]
gi|1197266891|ref|WP_086510929.1|0.000e+054.37choline dehydrogenase [Halomonas desiderata] >gi|1... [more]
gi|759953202|ref|WP_043637713.1|0.000e+058.05choline dehydrogenase [Chromobacterium haemolyticu... [more]
gi|498315346|ref|WP_010629502.1|0.000e+054.16choline dehydrogenase [Halomonas sp. KM-1][more]
gi|515278972|ref|WP_016836179.1|0.000e+054.41GMC family oxidoreductase [Herbaspirillum lusitanu... [more]
gi|1174878386|ref|WP_081555421.1|0.000e+057.88choline dehydrogenase [Chromobacterium haemolyticu... [more]
gi|1090760917|emb|SEF91047.1|0.000e+053.74choline dehydrogenase [Halomonas daqingensis][more]
gi|860399058|ref|WP_048412024.1|0.000e+058.05choline dehydrogenase [Chromobacterium sp. LK1] >g... [more]
gi|517929863|ref|WP_019100071.1|0.000e+057.88MULTISPECIES: hypothetical protein [Chromobacteriu... [more]
gi|930613339|ref|WP_054265458.1|0.000e+053.32choline dehydrogenase [Janthinobacterium sp. CG23_... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2459rna2459Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications