EWM28187.1, cds2436 (CDS) Nannochloropsis gaditana

Overview
NameEWM28187.1
Unique Namecds2436
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:400209..400283 -
Alignment locationCM002459.1:399108..399866 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28187.1
Productglutaredoxin 2
Orig transcript idgnl|cribi|Naga_100004g79.9118.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:400209..400283 -
CM002459.1supercontigCM002459.1:399108..399866 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0009055electron transfer activity
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR011767GLR_AS
IPR004045Glutathione_S-Trfase_N
IPR007494Glutaredoxin2_C
IPR010987Glutathione-S-Trfase_C-like
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|585110532|gb|EWM28187.1| (glutaredoxin 2 [Nannochloropsis gaditana])

HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL
Sbjct:    1 MPRLLQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|873239655|emb|CEL94178.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 229.565 bits (584), Expect = 1.944e-70
Identity = 114/231 (49.35%), Postives = 161/231 (69.70%), Query Frame = 0
Query:   53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQ-GERVVMPESMDIVKLIDEDPRWGP--PVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQNKS-LVADLSARLRELDAMLFS--DECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            P LY+YDHCPFCVRAR+IFGLK I H L+++ NDD +TPT L+GKKM PILE+   + GE ++MPES+DIVK IDE    G   P+L+  S R D+K + DSIA+ SRR +RPRFA S+ LPEF   +AR  ++  HP ++P   Y EN +  +  +A LS  L++LD M+ +  +  ++EGG+SYDD+D+F ++R L++V GL  PP +KAY+E   +KT++ LY +M  
Sbjct:  108 PRLYVYDHCPFCVRARMIFGLKNIKHDLVYMANDDIETPTHLIGKKMAPILEVRGRRPGEGLIMPESLDIVKYIDESEEIGAGLPLLKPFSGRSDLKEWLDSIAEPSRRLSRPRFAWSANLPEFAFDSARRTYIARHPLENPS-SYEENYERSAEWIAALSEGLKKLDGMIANPQEGYISEGGISYDDIDMFPRLRNLSIVKGLEFPPNVKAYIEVLSKKTDVALYTKMAF 337          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|298709630|emb|CBJ31439.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 217.624 bits (553), Expect = 5.672e-67
Identity = 116/239 (48.54%), Postives = 159/239 (66.53%), Query Frame = 0
Query:   41 GLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGE-RVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTENLQ-NKSLVADLSARLRELDAMLFSDECV-TEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMG 276
            G K +      RP L+IYDHCP+CVR R++FGLK I H L +L NDD +TPTA+VGKKMVPILE+     E   +M ESMDIVK +D DP++GPPVL    DR+D+  +  S A L RR  RPR A++  L EF T +AR AFVRNHP    P  Y  NL+ +  L+ +L   L +L+ M+ S   V  +G +SY+DV+ F ++RGLT+V GL +PP+L+AY++A  E+ ++PLY ++ 
Sbjct:    6 GSKPVKEMDSPRPKLWIYDHCPYCVRPRMVFGLKGITHDLAYLSNDDIETPTAMVGKKMVPILELGRPGSEDHEIMAESMDIVKRLDLDPQFGPPVLAPAVDRKDLDGWVSSAAMLMRRLVRPRNAVTP-LAEFQTRSAREAFVRNHPLPE-PSSYEANLKASPKLIEELERELWKLEGMIHSPTSVAADGKLSYNDVEFFPRMRGLTIVQGLGIPPKLRAYLDAVSERVDVPLYDKIA 242          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|676393869|ref|XP_009040212.1| (hypothetical protein AURANDRAFT_31368 [Aureococcus anophagefferens] >gi|323449194|gb|EGB05084.1| hypothetical protein AURANDRAFT_31368 [Aureococcus anophagefferens])

HSP 1 Score: 196.438 bits (498), Expect = 1.477e-58
Identity = 100/246 (40.65%), Postives = 158/246 (64.23%), Query Frame = 0
Query:   36 AAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNH---PFKSPPFDYTENLQNKSLVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            AA+  GL   +  L   P LY+YDHCPFCVRAR+  GLK + H + F+ NDD   PT+LVGKK+ PI +     G      ES+DIV+ +D D ++GPP + R  SDR D+KA+  S+    R   RPR+ + + LPEF T +++ AFV+NH   P +    +  ++  + +L+A+++ +L++L+ ++  ++C TEGG+S DD+DL+ ++R LT+V GLV PP+++AY++   EK + PLY  + +
Sbjct:   13 AASVDGLAATTISLTPTPVLYVYDHCPFCVRARLALGLKGVRHDVRFMANDDVPLPTSLVGKKIAPIWD----DGSSAPYAESLDIVRNVDADDKYGPPGMFREMSDRTDLKAWQKSVQQPLRLLQRPRY-VKTYLPEFVTRSSKDAFVKNHQLPPSREAGLEERQS-NDAALIAEVNEKLKDLEPLICCEDCCTEGGLSLDDIDLWSRLRSLTIVKGLVFPPKVRAYMDNLAEKGDCPLYDAIAI 252          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|1210521001|dbj|GAX20106.1| (glutaredoxin 2 [Fistulifera solaris])

HSP 1 Score: 196.823 bits (499), Expect = 3.398e-58
Identity = 109/289 (37.72%), Postives = 160/289 (55.36%), Query Frame = 0
Query:   10 MLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQL---DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD---------------YTENLQNKSL--VADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            +L+F S +  F  P      +R P  A     +     +    +  PN+Y+YDHCPFCVR R   G+K I H + F+ NDD  TPTALVGKK+ PI E   A    + M ES+DI+ L+D D R+GP  V+   +DR DIKA+  S+  L R   RPR+  + +LPEF     R AF+ NHP   PP++               Y E +       + +L+ +L ELD ++FS    + GG+SYDD+DLF ++R +T++  ++ P +L+AY++   E  +IPLY +M L
Sbjct:    8 LLLFASSVQAFQVPLGQRSLMRAPMTATVAETVPFSKPERVIPEVLPNVYVYDHCPFCVRVRFALGVKNIKHNIRFMANDDVPTPTALVGKKIAPIFEWPSAD---ICMAESLDIISLVDSDERFGPTGVILPATDRADIKAWQKSVQGLLRILQRPRYVATGLLPEFQQLDGRQAFIMNHPL--PPYEKAEWKEMGAEERLSIYAETMAKDPADEIEELNRKLVELDDIIFSQYHCSPGGLSYDDIDLFARLRSITIIKDVIWPSKLRAYMDVMSELGDIPLYDEMAL 291          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|1210528014|dbj|GAX13129.1| (glutaredoxin 2 [Fistulifera solaris])

HSP 1 Score: 196.438 bits (498), Expect = 4.310e-58
Identity = 109/289 (37.72%), Postives = 160/289 (55.36%), Query Frame = 0
Query:   10 MLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQL---DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD---------------YTENLQNKSL--VADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            +L+F S +  F  P      +R P  A     +     +    +  PN+Y+YDHCPFCVR R   G+K I H + F+ NDD  TPTALVGKK+ PI E   A    + M ES+DI+ L+D D R+GP  V+   +DR DIKA+  S+  L R   RPR+  + +LPEF     R AF+ NHP   PP++               Y E +       + +L+ +L ELD ++FS    + GG+SYDD+DLF ++R +T++  ++ P +L+AY++   E  +IPLY +M L
Sbjct:    8 LLLFASSVRAFQVPLGQRSLMRAPMTATVAETVPFSKPERVIPEVLPNVYVYDHCPFCVRVRFALGVKNIKHNIRFMANDDVPTPTALVGKKIAPIFEWPSAD---ICMAESLDIISLVDSDERFGPTGVILPATDRADIKAWQKSVQGLLRILQRPRYVATGLLPEFQQLDGRQAFIMNHPL--PPYEKAEWKEMGAEERLSIYAETMAKDPADEIEELNRKLVELDDIIFSQYHCSPGGLSYDDIDLFARLRSITIIKDVIWPSKLRAYMDGMSELGDIPLYDEMAL 291          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|551612145|ref|XP_005787117.1| (hypothetical protein EMIHUDRAFT_447067, partial [Emiliania huxleyi CCMP1516] >gi|485640459|gb|EOD34688.1| hypothetical protein EMIHUDRAFT_447067, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 191.43 bits (485), Expect = 1.818e-56
Identity = 114/293 (38.91%), Postives = 165/293 (56.31%), Query Frame = 0
Query:    5 LQVVLMLMFCSRIAGFCKPRMGTLPVRLPSRAAAHRGLKMMSTQLDKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD------------------YTENL-QNKSLVADLSARLRELDAMLFSDECVTEG-GVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            + + ++ +FCS      +    + PVR  SRAAA+  L          P LY+YDHCPFCVR R+  G+  +PH+L+F+ NDD +TPTA+VGKK+ PI   +D +G    M ES+DI+   D   +  P      S R D+KA+  S+  L R+  RPR+ +   LPEF   A R AFV NH  + PPF+                  Y+E   Q   L+A+ +A++ EL+ M+ + E  TEG G SYDDVDL+ ++R LTVV GL + P+ +AY++ F E  ++PLY  M +
Sbjct:    1 MALAVVAVFCSGFQRLPQRLPSSAPVRPASRAAAYMAL----------PELYVYDHCPFCVRVRVAAGVLGVPHKLVFMGNDDVETPTAMVGKKIAPIW--VDEEGP---MAESLDIIAKFDAGGQIAP-----ASGRTDLKAWQKSVQTLMRKLQRPRYVMVP-LPEFMQKAGRDAFVANH--QMPPFEKSEWKGNPDMPLEQKYQKYSEAFAQTPELLAEANAKVAELEGMIHAPEACTEGLGFSYDDVDLWARLRSLTVVKGLQIGPKTRAYLDHFAEAGDVPLYDVMAV 270          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|224015302|ref|XP_002297308.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220968021|gb|EED86379.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 189.889 bits (481), Expect = 2.521e-55
Identity = 97/249 (38.96%), Postives = 148/249 (59.44%), Query Frame = 0
Query:   53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPP-VLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNH---PFKSPPFDYTENLQNKS--------------------LVADLSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            P +Y+YDHCPFCVR R+  G+K + H + FL NDD  TPT LVGKK+ PI ++ +   ++++M ES+DI+  ID D R+GP   +   S R+DIKA+  S+  L R   RPR+  + +LPEF     R AF++NH   P++ P +    + +N                      L+ DL+ARL ELD ML+S+   +EGG S DD+DL+ ++R +T++ G+  P +L+AY++      ++PLY +M L
Sbjct:   69 PTVYVYDHCPFCVRVRLAMGMKNVKHLIHFLANDDVATPTGLVGKKIAPIFQLPE---DKLIMMESLDIIAKIDSDERFGPTNQILPASGRKDIKAWQKSVQTLLRTLQRPRYVATGLLPEFQQLDGRHAFIKNHQLPPYEKPEWKGDGSSENPGMEMDQKLKLYAEAMAADPTPLIEDLNARLVELDDMLYSEHFCSEGGFSLDDIDLWARLRSVTIIQGVQWPGKLRAYMDNLSALGDVPLYDEMAL 314          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|551619434|ref|XP_005790301.1| (hypothetical protein EMIHUDRAFT_446936 [Emiliania huxleyi CCMP1516] >gi|485643911|gb|EOD37872.1| hypothetical protein EMIHUDRAFT_446936 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 181.415 bits (459), Expect = 5.247e-53
Identity = 102/245 (41.63%), Postives = 145/245 (59.18%), Query Frame = 0
Query:   53 PNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGPPVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFD------------------YTENL-QNKSLVADLSARLRELDAMLFSDECVTEG-GVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            P LY+YDHCPFCVR R+  G+  +PH+L+F+ NDD +TPTA+VGKK+ PI   +D +G    M ES+DI+   D   +  P      S R D+KA+  S+  L R+  RPR+ +   LPEF   A R AFV NH  + PPF+                  Y+E   Q   L+A+ +A++ EL+ M+ + E  TEG G SYDDVDL+ ++R LTVV GL + P+ +AY++ F E  ++PLY  M +
Sbjct:    4 PELYVYDHCPFCVRVRVAAGVLGVPHKLVFMGNDDVETPTAMVGKKIAPIW--VDEEGP---MAESLDIIAKFDAGGQIAP-----ASGRTDLKAWQKSVQTLMRKLQRPRYVMVP-LPEFMQKAGRDAFVANH--QMPPFEKSEWKGNPDMPLEQKYQKYSEAFAQTPELLAEANAKVAELEGMIHAPEACTEGLGFSYDDVDLWARLRSLTVVKGLQIGPKTRAYLDHFAEAGDVPLYDVMAV 235          
BLAST of EWM28187.1 vs. NCBI_GenBank
Match: gi|219123711|ref|XP_002182163.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406124|gb|EEC46064.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 182.956 bits (463), Expect = 1.105e-52
Identity = 101/249 (40.56%), Postives = 144/249 (57.83%), Query Frame = 0
Query:   50 DKRPNLYIYDHCPFCVRARIIFGLKRIPHQLIFLDNDDADTPTALVGKKMVPILEMIDAQGERVVMPESMDIVKLIDEDPRWGP-PVLRRGSDREDIKAFFDSIADLSRRCTRPRFALSSVLPEFHTPAARAAFVRNHPFKSPPFDYTE-------------NLQNKSLVAD-------LSARLRELDAMLFSDECVTEGGVSYDDVDLFGKVRGLTVVAGLVLPPRLKAYVEAFGEKTEIPLYYQMGL 277
            D  P +Y+YDHCPFCVR R   G+K + H + FL NDD  TPTALVGKK+ P+    +A    +VM ES+DI +L+D D R+GP   +R  ++R DI+ +  S+  L R   RPR+  + +LPEF    AR AFV NH    PP++  E              L   +  AD       L+ +L ELD +L S+   + GG+SYDDVDLF ++R +T+V G+  P +L+AY++   E  ++PLY  M +
Sbjct:   62 DVLPTVYVYDHCPFCVRVRFALGVKNVKHYVHFLANDDVPTPTALVGKKIAPVWVWPEAD---IVMAESLDICRLVDADERFGPVQAIRPATERTDIRDWQKSVQSLLRTLQRPRYVATGLLPEFQQRDARDAFVANHQL--PPYEKNEWKGSDGPTLAEKWQLYRDARDADPTQHLQALNEKLVELDELLDSEYHCSPGGLSYDDVDLFARLRSVTIVKGVQWPTKLRAYMDYMAELGDVPLYDAMAM 305          
The following BLAST results are available for this feature:
BLAST of EWM28187.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110532|gb|EWM28187.1|0.000e+0100.00glutaredoxin 2 [Nannochloropsis gaditana][more]
gi|873239655|emb|CEL94178.1|1.944e-7049.35unnamed protein product [Vitrella brassicaformis C... [more]
gi|298709630|emb|CBJ31439.1|5.672e-6748.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|676393869|ref|XP_009040212.1|1.477e-5840.65hypothetical protein AURANDRAFT_31368 [Aureococcus... [more]
gi|1210521001|dbj|GAX20106.1|3.398e-5837.72glutaredoxin 2 [Fistulifera solaris][more]
gi|1210528014|dbj|GAX13129.1|4.310e-5837.72glutaredoxin 2 [Fistulifera solaris][more]
gi|551612145|ref|XP_005787117.1|1.818e-5638.91hypothetical protein EMIHUDRAFT_447067, partial [E... [more]
gi|224015302|ref|XP_002297308.1|2.521e-5538.96predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551619434|ref|XP_005790301.1|5.247e-5341.63hypothetical protein EMIHUDRAFT_446936 [Emiliania ... [more]
gi|219123711|ref|XP_002182163.1|1.105e-5240.56predicted protein [Phaeodactylum tricornutum CCAP ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2444rna2444Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications