EWM28305.1, cds2421 (CDS) Nannochloropsis gaditana

Overview
NameEWM28305.1
Unique Namecds2421
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:368036..369223 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28305.1
Producttpr repeat protein
Orig transcript idgnl|cribi|Naga_100004g63.9236.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:368036..369223 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR001440TPR_1
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|585110650|gb|EWM28305.1| (tpr repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0
Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0
Query:    1 MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD 395
            MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD
Sbjct:    1 MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD 395          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|648406390|ref|WP_026098141.1| (hypothetical protein [Oscillatoria sp. PCC 10802])

HSP 1 Score: 225.328 bits (573), Expect = 4.952e-68
Identity = 119/233 (51.07%), Postives = 149/233 (63.95%), Query Frame = 0
Query:  120 LQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            L ++AF+ATN   +  A+  WT++ID  P++AA  SNRGN+R S      A  D+ +AI LAP  PDP L RG A E LGQYEAA+ DY   NR  V      D   YNNR NA+AGLGRWE A+ DYRQAA + P Y F  A+ ALA YQ G   EAI+ MR L+ KYP+  DMRAAL    W++G F +AE+ W   +  D RYR I WV +VRRWPP+M+  LD FL+L+
Sbjct:   45 LAKKAFEATNAGDFATAENYWTQLIDQFPDSAALWSNRGNSRVSQNKLEAAIGDYKKAIELAPGAPDPYLNRGTALEGLGQYEAAIADY---NR--VLELDPRDAAGYNNRGNAEAGLGRWEAALADYRQAANLAPDYAFARANWALALYQTGHTEEAIRTMRNLVRKYPKFPDMRAALTAALWQQGQFGEAESNWVAVVGLDSRYRDINWVASVRRWPPKMVSALDKFLHLQ 272          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1180062989|ref|WP_083583036.1| (hypothetical protein [Phormidesmis priestleyi])

HSP 1 Score: 224.942 bits (572), Expect = 9.798e-68
Identity = 115/250 (46.00%), Postives = 158/250 (63.20%), Query Frame = 0
Query:  104 ITRTQNPKIDLV-TISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            +  +Q   IDL   +  L+EQAF+ATN+  +  A+  WT++ID  P+N AA SNRGN R S     +A  DF++A+ LAP  PDP L RG A E LG++EAA+ DY      +V      DP  YNNR NA+AGLG WE A+ D+++A+ + P Y F  A+ ALA YQ+G   EA++ M+ L+ KYP+  DMRAAL    W +G   +AE+ W +A+  D RY+ I WV+T RRWPP++   LD FLNL+
Sbjct:   34 VAPSQPSAIDLFEQLGVLREQAFEATNKGDFATAEGYWTQIIDRFPDNPAAWSNRGNARVSQNKLDDAIADFNKAMELAPSAPDPYLNRGAALEGLGKWEAAIADY-----NHVLELEPNDPAAYNNRGNAEAGLGNWERAIADFQKASNLAPQYAFARANYALAQYQIGQTDEAVRTMKNLVRKYPKFADMRAALTAALWVQGKQGEAESQWVSAVGLDRRYKDINWVKTTRRWPPKIATALDKFLNLQ 278          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1121222495|ref|WP_073549935.1| (hypothetical protein [Chroogloeocystis siderophila] >gi|1115261668|gb|OKH25372.1| hypothetical protein NIES1031_13410 [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 223.016 bits (567), Expect = 3.290e-67
Identity = 124/283 (43.82%), Postives = 167/283 (59.01%), Query Frame = 0
Query:   70 LVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            + L+ LFG+  P           LAQ    ++  IT  Q  ++D      L +QA  ATN   +  A+  WT++IDL P+N AA SNRGN R S     EA  D+++++ LAP  PDP L RG A E LG++E A+ DY   NR  V      D + YNNR NA+AGLGRWEEA+ DYR++ ++ P + F  A+ ALA YQ+G   EAI+ MR ++ KYP   DMRAAL   YW++G   +AE+ W +AI  D RY+ I WV  +RRWPP M+  L+ F  LK
Sbjct:    7 IFLILLFGVTEP----------VLAQ----SQPQITAEQFQQLD-----SLAQQALNATNSGDFATAETYWTQIIDLFPDNPAAWSNRGNARVSQNKLDEALADYNKSVELAPNAPDPYLNRGTAYEGLGRWEEAIADY---NR--VLEIDPNDAMAYNNRGNAEAGLGRWEEAIADYRKSTEIAPNFAFARANYALALYQVGKKDEAIRNMRNIIRKYPSFADMRAALTAAYWEQGKQGEAESNWVSAIGLDQRYQDINWVANIRRWPPVMVAALEKFQKLK 265          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1214781529|ref|WP_088892683.1| (hypothetical protein [Leptolyngbya ohadii])

HSP 1 Score: 223.016 bits (567), Expect = 5.403e-67
Identity = 115/236 (48.73%), Postives = 153/236 (64.83%), Query Frame = 0
Query:  117 ISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            ++ L+ +AF ATN   +  A+  WTK+++  P+  A  SNRGN R S      A ED++RAI LAP+ PDP L RG A E LGQY AA++DY   NR  V      DP  YNNR NA+AGLG+WE+AV+DY++AA + P Y F  A+ ALA YQ G+   A ++MR L+ KYPQ  DMRAAL  + W EG   +AE+ W  A+  D RY+ ++WV +VRRWPP M++ L+ FL LK
Sbjct:   52 LADLKAKAFAATNEGNFAAAETYWTKLLEALPDEPAVWSNRGNARVSQNKLEAAIEDYNRAIELAPEAPDPYLNRGTAYEGLGQYAAAIEDY---NR--VLEIDSSDPAAYNNRGNAEAGLGQWEQAVQDYKKAADLVPDYAFARANYALALYQTGETEAATREMRNLVRKYPQFADMRAALTAVLWVEGKQGEAESNWVAAVGLDKRYKDLDWVASVRRWPPAMVKALERFLTLK 282          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|506264663|ref|WP_015784438.1| (hypothetical protein [Cyanothece sp. PCC 8802] >gi|256590914|gb|ACV01801.1| TPR repeat-containing protein [Cyanothece sp. PCC 8802])

HSP 1 Score: 221.861 bits (564), Expect = 1.016e-66
Identity = 113/256 (44.14%), Postives = 159/256 (62.11%), Query Frame = 0
Query:  103 PITRTQNPKIDLVTISKLQE------QAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            P    Q+  I  +T  +LQ+      +A +AT +  + +A+  W+++I+  P N A  SNRGN+R S     EA  DF++AI LAP EPDP L RG A E  G+Y+ A+ DY      +V      D + YNNR NA+ GLG+WE+A++DY++A ++QP + F  A+ ALASYQLG+  EA+ QMR ++ KYP   DMRAAL  + W+ G   +AE+ W  A+  D RY+ +EWV  +RRWPP M+  LD FLNLK
Sbjct:   20 PTALAQDTSILSITEEQLQQGEEIAKKAIEATEKGNFSQAEAYWSQLIEQFPSNPAVWSNRGNSRVSQNKLDEAIADFNQAITLAPNEPDPYLNRGAALEGQGKYQEAITDY-----NHVLELDPHDAMAYNNRGNAEGGLGQWEKALEDYQKAVEIQPNFAFAKANVALASYQLGNTQEALNQMRKIVRKYPMFPDMRAALTAVLWELGQQGEAESNWVAAVGMDNRYQDLEWVSHIRRWPPEMVVALDNFLNLK 270          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|501593286|ref|WP_012596405.1| (hypothetical protein [Cyanothece sp. PCC 8801] >gi|218168407|gb|ACK67144.1| TPR repeat-containing protein [Cyanothece sp. PCC 8801])

HSP 1 Score: 221.476 bits (563), Expect = 1.449e-66
Identity = 113/256 (44.14%), Postives = 159/256 (62.11%), Query Frame = 0
Query:  103 PITRTQNPKIDLVTISKLQE------QAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            P    Q+  I  +T  +LQ+      +A +AT +  + +A+  W+++I+  P N A  SNRGN+R S     EA  DF++AI LAP EPDP L RG A E  G+Y+ A+ DY      +V      D + YNNR NA+ GLG+WE+A++DY++A ++QP + F  A+ ALASYQLG+  EA+ QMR ++ KYP   DMRAAL  + W+ G   +AE+ W  A+  D RY+ +EWV  +RRWPP M+  LD FLNLK
Sbjct:   20 PTALAQDTSILSITEEQLQQGEEIAKKAIEATEKGNFSQAEAYWSQLIEQFPSNPAVWSNRGNSRVSQNKLDEAIADFNQAITLAPNEPDPYLNRGAALEGQGKYQEAIADY-----NHVLELDPHDAMAYNNRGNAEGGLGQWEKALEDYQKAVEIQPNFAFAKANVALASYQLGNTQEALNQMRKIVRKYPMFPDMRAALTAVLWELGQQGEAESNWVAAVGMDNRYQDLEWVSHIRRWPPEMVVALDNFLNLK 270          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1178040760|ref|WP_082906258.1| (hypothetical protein [Phormidesmis priestleyi])

HSP 1 Score: 221.476 bits (563), Expect = 1.753e-66
Identity = 114/246 (46.34%), Postives = 155/246 (63.01%), Query Frame = 0
Query:  108 QNPKIDLV-TISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            Q   +DL   +  L+EQAF+ATN+  +  A+  WT++ID  P+NAAA SNRGN R S      A  DF++A+ LAP  PDP L RG A E LGQ+ AA+ DY      +V     +DP  YNNR NA+AGLG WE A+ D+++A+ + P Y F  A+ ALA YQ+G   EA++ MR L+ KYP+  DMRAAL    W +G   +AE+ W +A+  D RY+ I WV+T RRWPP++   L+ FL L+
Sbjct:   33 QPSALDLFEQLGTLKEQAFEATNKGDFATAEGYWTQIIDRFPDNAAAWSNRGNARVSQNKLDSAIADFNKAMELAPSAPDPYLNRGAALEGLGQWNAAIADY-----NHVLELDPQDPAAYNNRGNAQAGLGNWEVAIADFQKASDLAPQYAFARANYALAQYQIGQTEEAVRTMRNLVRKYPKFADMRAALTAALWVQGKQGEAESQWVSAVGLDRRYKDINWVKTTRRWPPQIAAALEKFLTLQ 273          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|740745192|ref|WP_038530478.1| (tetratricopeptide repeat protein [Synechocystis sp. PCC 6714] >gi|662704223|gb|AIE74198.1| hypothetical protein D082_16700 [Synechocystis sp. PCC 6714])

HSP 1 Score: 221.476 bits (563), Expect = 2.178e-66
Identity = 125/291 (42.96%), Postives = 170/291 (58.42%), Query Frame = 0
Query:   61 PPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNL 351
            P ++PS W +VL+ L  L  P+              + ATE PI  T      L    +L EQAF AT    +  A++ WT++I+  P+NAA  SNRGN+R S     EA  DF++AI LAP++ DP L RG A E  G+++AA+ DY   NR  V     ED   YNNR NA+ GLG W  A++D++QA  + P + F  A+ ALA Y+LG   EAI+ MR L+ KYP   DMRAAL  + W EG   +AE+ W  A+  D RY+ ++WV+ +RRWPP +I  LD FL+L
Sbjct:   10 PLLIPSLWGMVLVGLL-LFFPS-------------PVWATEGPIPITDE---QLEVGDRLTEQAFAATEVGDFVTAEKYWTELIEKFPQNAAVWSNRGNSRVSQNKLDEAIADFNQAIELAPEQADPYLNRGTALEAKGEFKAAIADY---NR--VLAVNPEDAFAYNNRGNAEGGLGNWASALEDFQQATAIAPNFAFAQANTALALYELGQKEEAIQTMRRLVKKYPMFADMRAALTAVLWVEGQQGEAESNWVAAVGVDSRYQDLDWVKQIRRWPPSVISALDKFLSL 278          
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|506435187|ref|WP_015954904.1| (hypothetical protein [Cyanothece sp. PCC 7424] >gi|218172571|gb|ACK71304.1| TPR repeat-containing protein [Cyanothece sp. PCC 7424])

HSP 1 Score: 221.09 bits (562), Expect = 2.434e-66
Identity = 111/233 (47.64%), Postives = 154/233 (66.09%), Query Frame = 0
Query:  120 LQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352
            L ++A +AT+R  + EA+  W+++I+  P N A  SNRGN R S     EA  DFD+AI LAP  PDP L RG A E  G+Y+AA++DY   NR  V     EDP+ YNNR NA+ GLG WEEA+ DY++A ++ P + F  A+ ALA Y++G+  EA ++MR L+ KYP   DMRAAL  + W++G   +AE+ W  A+  D RY+ ++WV+ +RRWPP+M+  LD FLNLK
Sbjct:   42 LAQKALEATDRGNFAEAEIYWSQLIEQFPTNPAVWSNRGNCRVSQYKLDEAIADFDKAIELAPHTPDPYLNRGTAFEAQGRYDAAIEDY---NR--VLSLDPEDPMAYNNRGNAQGGLGNWEEALADYQKATEIAPNFAFAQANVALALYEMGNKEEATRKMRNLVRKYPMFPDMRAALTAVLWEQGKQGEAESNWVAAVGIDHRYQDLDWVQNIRRWPPQMVVALDKFLNLK 269          
The following BLAST results are available for this feature:
BLAST of EWM28305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110650|gb|EWM28305.1|0.000e+0100.00tpr repeat protein [Nannochloropsis gaditana][more]
gi|648406390|ref|WP_026098141.1|4.952e-6851.07hypothetical protein [Oscillatoria sp. PCC 10802][more]
gi|1180062989|ref|WP_083583036.1|9.798e-6846.00hypothetical protein [Phormidesmis priestleyi][more]
gi|1121222495|ref|WP_073549935.1|3.290e-6743.82hypothetical protein [Chroogloeocystis siderophila... [more]
gi|1214781529|ref|WP_088892683.1|5.403e-6748.73hypothetical protein [Leptolyngbya ohadii][more]
gi|506264663|ref|WP_015784438.1|1.016e-6644.14hypothetical protein [Cyanothece sp. PCC 8802] >gi... [more]
gi|501593286|ref|WP_012596405.1|1.449e-6644.14hypothetical protein [Cyanothece sp. PCC 8801] >gi... [more]
gi|1178040760|ref|WP_082906258.1|1.753e-6646.34hypothetical protein [Phormidesmis priestleyi][more]
gi|740745192|ref|WP_038530478.1|2.178e-6642.96tetratricopeptide repeat protein [Synechocystis sp... [more]
gi|506435187|ref|WP_015954904.1|2.434e-6647.64hypothetical protein [Cyanothece sp. PCC 7424] >gi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2429rna2429Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications