EWM28305.1, cds2421 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|585110650|gb|EWM28305.1| (tpr repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 803.897 bits (2075), Expect = 0.000e+0 Identity = 395/395 (100.00%), Postives = 395/395 (100.00%), Query Frame = 0 Query: 1 MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD 395 MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD Sbjct: 1 MVSRVGSNGMVYCVLLLLLLFPRTTQGFGASLRKQKEVNLGRCAKLSMVPRQTCQRSALSPPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLKLPGSSKAAKFAAAAAEKTAAASAAVEAAPTSTETTAAAVKFDD 395
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|648406390|ref|WP_026098141.1| (hypothetical protein [Oscillatoria sp. PCC 10802]) HSP 1 Score: 225.328 bits (573), Expect = 4.952e-68 Identity = 119/233 (51.07%), Postives = 149/233 (63.95%), Query Frame = 0 Query: 120 LQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 L ++AF+ATN + A+ WT++ID P++AA SNRGN+R S A D+ +AI LAP PDP L RG A E LGQYEAA+ DY NR V D YNNR NA+AGLGRWE A+ DYRQAA + P Y F A+ ALA YQ G EAI+ MR L+ KYP+ DMRAAL W++G F +AE+ W + D RYR I WV +VRRWPP+M+ LD FL+L+ Sbjct: 45 LAKKAFEATNAGDFATAENYWTQLIDQFPDSAALWSNRGNSRVSQNKLEAAIGDYKKAIELAPGAPDPYLNRGTALEGLGQYEAAIADY---NR--VLELDPRDAAGYNNRGNAEAGLGRWEAALADYRQAANLAPDYAFARANWALALYQTGHTEEAIRTMRNLVRKYPKFPDMRAALTAALWQQGQFGEAESNWVAVVGLDSRYRDINWVASVRRWPPKMVSALDKFLHLQ 272
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1180062989|ref|WP_083583036.1| (hypothetical protein [Phormidesmis priestleyi]) HSP 1 Score: 224.942 bits (572), Expect = 9.798e-68 Identity = 115/250 (46.00%), Postives = 158/250 (63.20%), Query Frame = 0 Query: 104 ITRTQNPKIDLV-TISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 + +Q IDL + L+EQAF+ATN+ + A+ WT++ID P+N AA SNRGN R S +A DF++A+ LAP PDP L RG A E LG++EAA+ DY +V DP YNNR NA+AGLG WE A+ D+++A+ + P Y F A+ ALA YQ+G EA++ M+ L+ KYP+ DMRAAL W +G +AE+ W +A+ D RY+ I WV+T RRWPP++ LD FLNL+ Sbjct: 34 VAPSQPSAIDLFEQLGVLREQAFEATNKGDFATAEGYWTQIIDRFPDNPAAWSNRGNARVSQNKLDDAIADFNKAMELAPSAPDPYLNRGAALEGLGKWEAAIADY-----NHVLELEPNDPAAYNNRGNAEAGLGNWERAIADFQKASNLAPQYAFARANYALAQYQIGQTDEAVRTMKNLVRKYPKFADMRAALTAALWVQGKQGEAESQWVSAVGLDRRYKDINWVKTTRRWPPKIATALDKFLNLQ 278
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1121222495|ref|WP_073549935.1| (hypothetical protein [Chroogloeocystis siderophila] >gi|1115261668|gb|OKH25372.1| hypothetical protein NIES1031_13410 [Chroogloeocystis siderophila 5.2 s.c.1]) HSP 1 Score: 223.016 bits (567), Expect = 3.290e-67 Identity = 124/283 (43.82%), Postives = 167/283 (59.01%), Query Frame = 0 Query: 70 LVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 + L+ LFG+ P LAQ ++ IT Q ++D L +QA ATN + A+ WT++IDL P+N AA SNRGN R S EA D+++++ LAP PDP L RG A E LG++E A+ DY NR V D + YNNR NA+AGLGRWEEA+ DYR++ ++ P + F A+ ALA YQ+G EAI+ MR ++ KYP DMRAAL YW++G +AE+ W +AI D RY+ I WV +RRWPP M+ L+ F LK Sbjct: 7 IFLILLFGVTEP----------VLAQ----SQPQITAEQFQQLD-----SLAQQALNATNSGDFATAETYWTQIIDLFPDNPAAWSNRGNARVSQNKLDEALADYNKSVELAPNAPDPYLNRGTAYEGLGRWEEAIADY---NR--VLEIDPNDAMAYNNRGNAEAGLGRWEEAIADYRKSTEIAPNFAFARANYALALYQVGKKDEAIRNMRNIIRKYPSFADMRAALTAAYWEQGKQGEAESNWVSAIGLDQRYQDINWVANIRRWPPVMVAALEKFQKLK 265
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1214781529|ref|WP_088892683.1| (hypothetical protein [Leptolyngbya ohadii]) HSP 1 Score: 223.016 bits (567), Expect = 5.403e-67 Identity = 115/236 (48.73%), Postives = 153/236 (64.83%), Query Frame = 0 Query: 117 ISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 ++ L+ +AF ATN + A+ WTK+++ P+ A SNRGN R S A ED++RAI LAP+ PDP L RG A E LGQY AA++DY NR V DP YNNR NA+AGLG+WE+AV+DY++AA + P Y F A+ ALA YQ G+ A ++MR L+ KYPQ DMRAAL + W EG +AE+ W A+ D RY+ ++WV +VRRWPP M++ L+ FL LK Sbjct: 52 LADLKAKAFAATNEGNFAAAETYWTKLLEALPDEPAVWSNRGNARVSQNKLEAAIEDYNRAIELAPEAPDPYLNRGTAYEGLGQYAAAIEDY---NR--VLEIDSSDPAAYNNRGNAEAGLGQWEQAVQDYKKAADLVPDYAFARANYALALYQTGETEAATREMRNLVRKYPQFADMRAALTAVLWVEGKQGEAESNWVAAVGLDKRYKDLDWVASVRRWPPAMVKALERFLTLK 282
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|506264663|ref|WP_015784438.1| (hypothetical protein [Cyanothece sp. PCC 8802] >gi|256590914|gb|ACV01801.1| TPR repeat-containing protein [Cyanothece sp. PCC 8802]) HSP 1 Score: 221.861 bits (564), Expect = 1.016e-66 Identity = 113/256 (44.14%), Postives = 159/256 (62.11%), Query Frame = 0 Query: 103 PITRTQNPKIDLVTISKLQE------QAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 P Q+ I +T +LQ+ +A +AT + + +A+ W+++I+ P N A SNRGN+R S EA DF++AI LAP EPDP L RG A E G+Y+ A+ DY +V D + YNNR NA+ GLG+WE+A++DY++A ++QP + F A+ ALASYQLG+ EA+ QMR ++ KYP DMRAAL + W+ G +AE+ W A+ D RY+ +EWV +RRWPP M+ LD FLNLK Sbjct: 20 PTALAQDTSILSITEEQLQQGEEIAKKAIEATEKGNFSQAEAYWSQLIEQFPSNPAVWSNRGNSRVSQNKLDEAIADFNQAITLAPNEPDPYLNRGAALEGQGKYQEAITDY-----NHVLELDPHDAMAYNNRGNAEGGLGQWEKALEDYQKAVEIQPNFAFAKANVALASYQLGNTQEALNQMRKIVRKYPMFPDMRAALTAVLWELGQQGEAESNWVAAVGMDNRYQDLEWVSHIRRWPPEMVVALDNFLNLK 270
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|501593286|ref|WP_012596405.1| (hypothetical protein [Cyanothece sp. PCC 8801] >gi|218168407|gb|ACK67144.1| TPR repeat-containing protein [Cyanothece sp. PCC 8801]) HSP 1 Score: 221.476 bits (563), Expect = 1.449e-66 Identity = 113/256 (44.14%), Postives = 159/256 (62.11%), Query Frame = 0 Query: 103 PITRTQNPKIDLVTISKLQE------QAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 P Q+ I +T +LQ+ +A +AT + + +A+ W+++I+ P N A SNRGN+R S EA DF++AI LAP EPDP L RG A E G+Y+ A+ DY +V D + YNNR NA+ GLG+WE+A++DY++A ++QP + F A+ ALASYQLG+ EA+ QMR ++ KYP DMRAAL + W+ G +AE+ W A+ D RY+ +EWV +RRWPP M+ LD FLNLK Sbjct: 20 PTALAQDTSILSITEEQLQQGEEIAKKAIEATEKGNFSQAEAYWSQLIEQFPSNPAVWSNRGNSRVSQNKLDEAIADFNQAITLAPNEPDPYLNRGAALEGQGKYQEAIADY-----NHVLELDPHDAMAYNNRGNAEGGLGQWEKALEDYQKAVEIQPNFAFAKANVALASYQLGNTQEALNQMRKIVRKYPMFPDMRAALTAVLWELGQQGEAESNWVAAVGMDNRYQDLEWVSHIRRWPPEMVVALDNFLNLK 270
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|1178040760|ref|WP_082906258.1| (hypothetical protein [Phormidesmis priestleyi]) HSP 1 Score: 221.476 bits (563), Expect = 1.753e-66 Identity = 114/246 (46.34%), Postives = 155/246 (63.01%), Query Frame = 0 Query: 108 QNPKIDLV-TISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 Q +DL + L+EQAF+ATN+ + A+ WT++ID P+NAAA SNRGN R S A DF++A+ LAP PDP L RG A E LGQ+ AA+ DY +V +DP YNNR NA+AGLG WE A+ D+++A+ + P Y F A+ ALA YQ+G EA++ MR L+ KYP+ DMRAAL W +G +AE+ W +A+ D RY+ I WV+T RRWPP++ L+ FL L+ Sbjct: 33 QPSALDLFEQLGTLKEQAFEATNKGDFATAEGYWTQIIDRFPDNAAAWSNRGNARVSQNKLDSAIADFNKAMELAPSAPDPYLNRGAALEGLGQWNAAIADY-----NHVLELDPQDPAAYNNRGNAQAGLGNWEVAIADFQKASDLAPQYAFARANYALAQYQIGQTEEAVRTMRNLVRKYPKFADMRAALTAALWVQGKQGEAESQWVSAVGLDRRYKDINWVKTTRRWPPQIAAALEKFLTLQ 273
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|740745192|ref|WP_038530478.1| (tetratricopeptide repeat protein [Synechocystis sp. PCC 6714] >gi|662704223|gb|AIE74198.1| hypothetical protein D082_16700 [Synechocystis sp. PCC 6714]) HSP 1 Score: 221.476 bits (563), Expect = 2.178e-66 Identity = 125/291 (42.96%), Postives = 170/291 (58.42%), Query Frame = 0 Query: 61 PPVLPSAWRLVLLSLFGLRSPADAAVALSTSTLAQEIQATESPITRTQNPKIDLVTISKLQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNL 351 P ++PS W +VL+ L L P+ + ATE PI T L +L EQAF AT + A++ WT++I+ P+NAA SNRGN+R S EA DF++AI LAP++ DP L RG A E G+++AA+ DY NR V ED YNNR NA+ GLG W A++D++QA + P + F A+ ALA Y+LG EAI+ MR L+ KYP DMRAAL + W EG +AE+ W A+ D RY+ ++WV+ +RRWPP +I LD FL+L Sbjct: 10 PLLIPSLWGMVLVGLL-LFFPS-------------PVWATEGPIPITDE---QLEVGDRLTEQAFAATEVGDFVTAEKYWTELIEKFPQNAAVWSNRGNSRVSQNKLDEAIADFNQAIELAPEQADPYLNRGTALEAKGEFKAAIADY---NR--VLAVNPEDAFAYNNRGNAEGGLGNWASALEDFQQATAIAPNFAFAQANTALALYELGQKEEAIQTMRRLVKKYPMFADMRAALTAVLWVEGQQGEAESNWVAAVGVDSRYQDLDWVKQIRRWPPSVISALDKFLSL 278
BLAST of EWM28305.1 vs. NCBI_GenBank
Match: gi|506435187|ref|WP_015954904.1| (hypothetical protein [Cyanothece sp. PCC 7424] >gi|218172571|gb|ACK71304.1| TPR repeat-containing protein [Cyanothece sp. PCC 7424]) HSP 1 Score: 221.09 bits (562), Expect = 2.434e-66 Identity = 111/233 (47.64%), Postives = 154/233 (66.09%), Query Frame = 0 Query: 120 LQEQAFQATNRFQWKEADRAWTKVIDLDPENAAAISNRGNTRTSMGLCAEAKEDFDRAIALAPKEPDPNLGRGVAEECLGQYEAALQDYAEANRKNVALTGKEDPVTYNNRANAKAGLGRWEEAVKDYRQAAKMQPGYVFPLASAALASYQLGDDAEAIKQMRLLLVKYPQLVDMRAALAVIYWKEGDFSKAETAWYNAINEDPRYRRIEWVRTVRRWPPRMIEELDAFLNLK 352 L ++A +AT+R + EA+ W+++I+ P N A SNRGN R S EA DFD+AI LAP PDP L RG A E G+Y+AA++DY NR V EDP+ YNNR NA+ GLG WEEA+ DY++A ++ P + F A+ ALA Y++G+ EA ++MR L+ KYP DMRAAL + W++G +AE+ W A+ D RY+ ++WV+ +RRWPP+M+ LD FLNLK Sbjct: 42 LAQKALEATDRGNFAEAEIYWSQLIEQFPTNPAVWSNRGNCRVSQYKLDEAIADFDKAIELAPHTPDPYLNRGTAFEAQGRYDAAIEDY---NR--VLSLDPEDPMAYNNRGNAQGGLGNWEEALADYQKATEIAPNFAFAQANVALALYEMGNKEEATRKMRNLVRKYPMFPDMRAALTAVLWEQGKQGEAESNWVAAVGIDHRYQDLDWVQNIRRWPPQMVVALDKFLNLK 269 The following BLAST results are available for this feature:
BLAST of EWM28305.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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