EWM28145.1, cds2387 (CDS) Nannochloropsis gaditana

Overview
NameEWM28145.1
Unique Namecds2387
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:279504..279572 +
Alignment locationCM002459.1:279685..280815 +
Alignment locationCM002459.1:280968..281185 +
Alignment locationCM002459.1:281377..281743 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28145.1
Productcop9 signalosome complex subunit 3
Orig transcript idgnl|cribi|Naga_100004g26.9076.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:279504..279572 +
CM002459.1supercontigCM002459.1:279685..280815 +
CM002459.1supercontigCM002459.1:280968..281185 +
CM002459.1supercontigCM002459.1:281377..281743 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR000717PCI_dom
Homology
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|585110490|gb|EWM28145.1| (cop9 signalosome complex subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 1196.42 bits (3094), Expect = 0.000e+0
Identity = 594/594 (100.00%), Postives = 594/594 (100.00%), Query Frame = 0
Query:    1 MAVLDDVLNHILNLSTGKEEDYDELHRKLSNQAENLRSLSTTTATGHEEPPPLLRVSRDTLHLPEHTLGVLHLLAAQAPTVSVHHASSHREHFLGVCEVFLVKFDPDQAARAVKEFAELVHRYTDLLGHPPPSDAGPGGAGGGEEADDNSMGHNNLGEEAEVAAETAHQPAQEDAAPAPTRPLPAVRDLVRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGGLGRGGGRGGLGLRSASTVVAGGDGGRRGAEQSRGGTGREGSETHEGDSMGEDEEEEEEEEEEEEDLPRYASARS 594
            MAVLDDVLNHILNLSTGKEEDYDELHRKLSNQAENLRSLSTTTATGHEEPPPLLRVSRDTLHLPEHTLGVLHLLAAQAPTVSVHHASSHREHFLGVCEVFLVKFDPDQAARAVKEFAELVHRYTDLLGHPPPSDAGPGGAGGGEEADDNSMGHNNLGEEAEVAAETAHQPAQEDAAPAPTRPLPAVRDLVRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGGLGRGGGRGGLGLRSASTVVAGGDGGRRGAEQSRGGTGREGSETHEGDSMGEDEEEEEEEEEEEEDLPRYASARS
Sbjct:    1 MAVLDDVLNHILNLSTGKEEDYDELHRKLSNQAENLRSLSTTTATGHEEPPPLLRVSRDTLHLPEHTLGVLHLLAAQAPTVSVHHASSHREHFLGVCEVFLVKFDPDQAARAVKEFAELVHRYTDLLGHPPPSDAGPGGAGGGEEADDNSMGHNNLGEEAEVAAETAHQPAQEDAAPAPTRPLPAVRDLVRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGGLGRGGGRGGLGLRSASTVVAGGDGGRRGAEQSRGGTGREGSETHEGDSMGEDEEEEEEEEEEEEDLPRYASARS 594          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|449441398|ref|XP_004138469.1| (PREDICTED: COP9 signalosome complex subunit 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 144.436 bits (363), Expect = 4.222e-34
Identity = 94/329 (28.57%), Postives = 153/329 (46.50%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGR 518
            +RG+ PL TA R L T    LT +HP+ L +CL A   +     + +  I  VD         D+  Y YY GM  + L+  H A++    V++ P Q+++A+AVEAY+K +L                              S I   Q    LP  TS +  R+++    PY ++  +    + E +  +   +     +  N+GL +Q +  +  R +++L +T++ LSLQD+A      +P  AE  VL  +  G + ATI++   MV F +D    Q  S   I R+D  ++ +M L  ++ A D  ISS P Y++KA +   R
Sbjct:  118 IRGVAPLLTAVRKLQTSSEHLTTLHPEFLLLCLLAKSYKTGRS-ILDNDILEVDQPR------DLFLYCYYGGMICVGLKLFHKALELLHNVVTAPMQSMNAIAVEAYKKYILV-----------------------------SLIYNGQFSTSLPKYTSSVAQRNLKNFCQPYIELANSYSTGNVEELDTVFQTNRQKFESDNNLGLVKQAVSSMYKRNIQRLTQTYLTLSLQDIASTVKLNSPKEAEMHVLQMIQDGEIFATINQKDGMVRFLED--SEQYKSCRMIERIDSSIQRIMTLTKKLTAMDENISSDPLYLAKAGRERQR 408          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|302764752|ref|XP_002965797.1| (hypothetical protein SELMODRAFT_439255 [Selaginella moellendorffii] >gi|300166611|gb|EFJ33217.1| hypothetical protein SELMODRAFT_439255 [Selaginella moellendorffii])

HSP 1 Score: 143.28 bits (360), Expect = 1.081e-33
Identity = 96/329 (29.18%), Postives = 159/329 (48.33%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGR 518
            +R +LPL  A R        LTP+H D L VCL   +  +A   + E  I+ +DP  TG+V  D L Y YY GM  + L++   A++  +   + PA  ++A+AVEAY+K VL   L+     P    P P  +PS                         IV R+++     Y +++T     +   ++  L+ H +     +N+GLA+QV+  +  R +++L +T++ LSLQD+A+     +   AE  VL  +  G + ATI++   MV F +D    Q  +     RL  E++ V+ LA ++ A D ++S    ++SK  +   R
Sbjct:  116 IRAVLPLQVAIRKFQPSSEYLTPIHADFLLVCL-LSKCYKAAAPILEDQIFEIDPKKTGLVPKDYLLYCYYGGMVQIGLKNFLRAMELLQHAFTAPAHVMNAIAVEAYKKYVLV-CLIHNGQVP----PFPKYTPS-------------------------IVQRNLKGCCQGYIELVTVYNNRNITDLQRCLTSHEEAFRNDKNLGLAKQVVASLYKRNIQRLTQTYLTLSLQDIAQTVQLESAKDAELHVLQMIQDGEIFATINQKDGMVRFQED--SEQYKTREMSQRLHSEIQKVIRLAKKLTAVDEQVSCDQAFLSKVGRERTR 411          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|449674513|ref|XP_002166362.2| (PREDICTED: COP9 signalosome complex subunit 3-like [Hydra vulgaris] >gi|828207506|ref|XP_012557306.1| PREDICTED: COP9 signalosome complex subunit 3-like [Hydra vulgaris])

HSP 1 Score: 142.51 bits (358), Expect = 1.831e-33
Identity = 92/345 (26.67%), Postives = 166/345 (48.12%), Query Frame = 0
Query:  180 TRPLPAVRDLVRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGGLGRG 524
             + L  ++  +RG+     A   + T+   +T +H DL Q+CL A   + A+ F+ +  +  ++       A   L YFYY GM FL+L+    A+ C +AVI+TPA  +S + +EAY+K +L   LL      LP                                TSP+V+RSI+  + PY ++  A    D   +R + ++H       +N+GL +QV+  +  +++++L +TF+ LSL ++A      + + AE  +L+ +A+G + ATI++   MV F D+  D    S    ++ D E+   ++L +R++  D  + + P+Y+ +          GR 
Sbjct:  104 VKCLIEIKQSIRGIHVFSEAILKVQTNSSQMTSLHSDLFQLCLSAKCFKPALKFL-DVDVTDINNEDGSFDARSFLLYFYYGGMIFLALKQFEKAMFCLQAVITTPAIPVSHIMLEAYKKYLLLSLLLNGKICNLP------------------------------KYTSPVVSRSIKPQSSPYTELAEAYFTYDPAHLRAVANKHQSVFHTDKNIGLVKQVMASLVKKRIQKLTKTFLTLSLSNMAARVNLRDASEAEKFLLNMIAEGTIFATIEQDVAMVSFHDNPQD--YYSAEFFSKFDSEITNCIHLNERLQIMDRELQTNPQYVQRMLNLAQLDDAGRS 415          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|700190518|gb|KGN45722.1| (hypothetical protein Csa_6G008050 [Cucumis sativus])

HSP 1 Score: 144.05 bits (362), Expect = 1.847e-33
Identity = 93/323 (28.79%), Postives = 151/323 (46.75%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKA 512
            +RG+ PL TA R L T    LT +HP+ L +CL A   +     + +  I  VD         D+  Y YY GM  + L+  H A++    V++ P Q+++A+AVEAY+K +L                              S I   Q    LP  TS +  R+++    PY ++  +    + E +  +   +     +  N+GL +Q +  +  R +++L +T++ LSLQD+A      +P  AE  VL  +  G + ATI++   MV F +D    Q  S   I R+D  ++ +M L  ++ A D  ISS P Y++KA
Sbjct:  181 IRGVAPLLTAVRKLQTSSEHLTTLHPEFLLLCLLAKSYKTGRS-ILDNDILEVDQPR------DLFLYCYYGGMICVGLKLFHKALELLHNVVTAPMQSMNAIAVEAYKKYILV-----------------------------SLIYNGQFSTSLPKYTSSVAQRNLKNFCQPYIELANSYSTGNVEELDTVFQTNRQKFESDNNLGLVKQAVSSMYKRNIQRLTQTYLTLSLQDIASTVKLNSPKEAEMHVLQMIQDGEIFATINQKDGMVRFLED--SEQYKSCRMIERIDSSIQRIMTLTKKLTAMDENISSDPLYLAKA 465          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|1191646943|gb|OTF98916.1| (putative proteasome component (PCI) domain protein [Helianthus annuus])

HSP 1 Score: 140.969 bits (354), Expect = 8.342e-33
Identity = 90/329 (27.36%), Postives = 153/329 (46.50%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGR 518
            +R + PL TA R +   P  LTP+HPD LQVCL A   +     + E  IY+VD         D   Y YY GM  +  +    A++ F  V++ P  +++A+AVEAY+K +L                              S I   Q  +  P  TS +  R+++  + PY ++  +    +   ++  +  + +      N+GL +QV+  +  R +++L +T++ LSLQD+A      +P  AE  VL+ +  G + ATI++   MV F +D    Q  +   I  +D  ++ +M L+ ++   D  +S  P Y+SK  +   R
Sbjct:  123 MRAVGPLLTAIRKIQPSPEHLTPLHPDFLQVCLSAKCYKIGYS-ILEDDIYKVDQPR------DFFLYCYYGGMICIGQKRFAKALELFHNVVTAPMSSMNAIAVEAYKKYILV-----------------------------SLIHLRQFSSTFPKYTSSVAQRNLKNFSQPYIELANSYSTGNISELQAFVQANQEKFENGNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTAQINSPKEAEMHVLEMIEDGEIYATINQKDGMVRFLED--PEQYKTCEMIEHIDSSIQRIMKLSKKLTTMDESMSCDPLYLSKVGRERQR 413          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|659081510|ref|XP_008441368.1| (PREDICTED: COP9 signalosome complex subunit 3 isoform X1 [Cucumis melo])

HSP 1 Score: 139.813 bits (351), Expect = 1.756e-32
Identity = 92/329 (27.96%), Postives = 152/329 (46.20%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGR 518
            +RG+ PL TA R L T    LT +HP+ L +CL A   +     + +  I  VD         D+  Y YY GM  + L+    A++    V++ P Q+++A+AVEAY+K +L                              S I   Q    LP  TS +  R+++    PY ++  +    + E +  +   +     +  N+GL +Q +  +  R +++L +T++ LSLQD+A      +P  AE  VL  +  G + ATI++   MV F +D    Q  S   I  +D  ++ +M L+ ++ A D  ISS P Y++KA +   R
Sbjct:  118 IRGVAPLLTAVRKLQTSSEHLTTLHPEFLLLCLLAKSYKTGRS-ILDNDILEVDQPR------DLFLYCYYGGMICIGLKLFQKALELLHNVVTAPMQSMNAIAVEAYKKYILV-----------------------------SLIYNGQFSTSLPKYTSSVAQRNLKNFCQPYIELANSYSTGNVEELDTVFQTNRQKFESDNNLGLVKQAVSSMYKRNIQRLTQTYLTLSLQDIASTVKLNSPKEAEMHVLQMIQDGEIFATINQKDGMVRFLED--SEQYKSCRMIEHIDSSIQRIMTLSKKLTAMDENISSDPLYLAKAGRERQR 408          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|1002287838|ref|XP_015648223.1| (PREDICTED: COP9 signalosome complex subunit 3 [Oryza sativa Japonica Group] >gi|42407907|dbj|BAD09047.1| putative COP9 complex subunit 3, FUS11 [Oryza sativa Japonica Group] >gi|113622839|dbj|BAF22784.1| Os08g0119000 [Oryza sativa Japonica Group] >gi|215708775|dbj|BAG94044.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215765037|dbj|BAG86734.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218200399|gb|EEC82826.1| hypothetical protein OsI_27624 [Oryza sativa Indica Group] >gi|222639816|gb|EEE67948.1| hypothetical protein OsJ_25844 [Oryza sativa Japonica Group] >gi|937928660|dbj|BAT03576.1| Os08g0119000 [Oryza sativa Japonica Group])

HSP 1 Score: 138.658 bits (348), Expect = 4.990e-32
Identity = 95/331 (28.70%), Postives = 153/331 (46.22%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGG 520
            +RG+ PL  A R + T    LTP+H D L +CL A + +  +  V E  I  VD         D+  Y YY GM ++ L+    A+D     ++ P  +L+A+AVEAY+K +L                              S I   Q+ +  P  TS    R+++ HA  Y D+ T     +   +   +  +A+   +  N+GL +QVL  +  R +++L +T++ LSL+D+A       P  AE  VL  +  G + ATI++   MV F +D    Q  S   +  +D  ++ +M L+ ++ + D  IS  P Y+ K   G  RGG
Sbjct:  122 IRGIAPLRAAIRKIQTSSEELTPIHADYLLLCLLAKQYKAGLS-VLEDDILEVDQPK------DLFLYCYYGGMIYIGLKKFTIALDFLHNAVTVPMSSLNAIAVEAYKKYILV-----------------------------SLIQNGQVPS-FPKYTSSTAQRNLKNHAQVYVDLSTCYSKGNYSELEEYIQLNAEKFQSDNNLGLVKQVLSSMYKRNIQRLTQTYLTLSLEDIASSVQLKTPKEAEMHVLRMIEDGEIHATINQKDGMVSFHED--PEQYKSCEMVEHIDSSIQRLMALSKKLSSIDENISCDPAYLMKT--GRERGG 411          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|1002866208|ref|XP_006659069.2| (PREDICTED: COP9 signalosome complex subunit 3 [Oryza brachyantha])

HSP 1 Score: 137.502 bits (345), Expect = 1.118e-31
Identity = 93/331 (28.10%), Postives = 157/331 (47.43%), Query Frame = 0
Query:  190 VRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLSQHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYFDDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYMSKAWKGGGRGG 520
            +RG++PL  A R + T    LTP+H D L +CL A + +  +  + +  +    P        D+  Y YY GM ++ L+    A++     +++P  +L+A+AVEAY+K +L  +L+     P             S P  +ST A                 R+++ HA  Y D+ T         +   +  +A+T  +  N+GL +QVL  +  R +++L +T++ LSL+D+A       P  AE  VL  +  G + ATI++   MV F +D    Q  S   + R+D  ++ +M L+ ++ + D  IS  P Y+ K   G  RGG
Sbjct:  122 IRGIVPLRAAIRKIQTSSEELTPIHADYLLLCLLAKQYKAGLSILEDDILEVHQPK-------DLFLYCYYGGMIYIGLKKFTIALEFLHNAVTSPMSSLNAIAVEAYKKYILV-SLIQNGQVP-------------SFPKYASTTA----------------QRNLKNHAQVYVDLSTCYGKGSYSELEEYIQLNAETFQSDNNLGLVKQVLSSMYKRNIQRLTQTYLTLSLEDIASSVQLNTPKEAEMHVLRMIEDGEIHATINQKDGMVSFQED--PEQYKSCEMVERIDSSIQRLMALSKKLSSIDENISCDPAYLMKT--GRERGG 411          
BLAST of EWM28145.1 vs. NCBI_GenBank
Match: gi|873227704|emb|CEM17796.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 141.354 bits (355), Expect = 1.135e-31
Identity = 97/340 (28.53%), Postives = 161/340 (47.35%), Query Frame = 0
Query:  177 PAPTRPLPAVRDLVRGLLPLDTAARTLVTDPHCLTPVHPDLLQVCLGAGRLQQAVDFVRERPIYRVDPAATGVVALDVLRYFYYAGMAFLSLQHLHDAVDCFKAVISTPAQALSAVAVEAYRKLVLAHALLPTPAKPLPASPSPSSSPSSSGPSASSTIAAAQMRALLPPKTSPIVARSIRQHALPYHDILTAAQAEDAERVRGLLS--QHADTLTAHQNMGLAQQVLDQIPVRKLRQLARTFVALSLQDVAEHTGSANPAAAEHMVLDQVAKGGVSATIDEVAQMVYF-----DDDRMDNQIGSTASIARLDEELKLVMNLADRVKAFDLRISSAPEYM 509
            P   R LPA++  +  L P           PH LTP+HP+ L+VCL       AVD + E PI  + P  T +   D L YFYY  M  + L+    A+     V+  P   +SA+ ++A++KLVL H +        P +P        S P+ S  IA +        ++S  V  S      PY+DI+ A +++D  ++  +LS     D L   QNMGLA+Q    +  R +  L  T++ LSL D+ +     +   AE MV D + +G ++A ID  +  V F     D+D   +      +  ++D + K ++++ + ++  D++I+  P ++
Sbjct:  181 PQGLRALPALKAAIGKLQPA----------PHVLTPIHPEFLKVCLKLKHYTYAVDVI-EVPILDLKPKQTCLYVEDFLLYFYYGAMIHIGLKEYPRAIQFLNLVLCCPGTCVSAIQIDAWKKLVLVHLIEHGEG---PQTPK-------SSPALSRAIAPSSGHHNYRSQSSGAVGLS------PYNDIIDAFKSKDTVKMARVLSGPSSVDILNRDQNMGLAKQCSAALHRRMIVNLTSTYLTLSLDDIRQRVHLQSVDEAETMVFDMITRGQINAVIDHSSNHVIFSEGDTDEDSTKDSGEGVLTQQQMDAQAKQMIDIGEMIRKLDIQIAVDPHFL 493          
The following BLAST results are available for this feature:
BLAST of EWM28145.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110490|gb|EWM28145.1|0.000e+0100.00cop9 signalosome complex subunit 3 [Nannochloropsi... [more]
gi|449441398|ref|XP_004138469.1|4.222e-3428.57PREDICTED: COP9 signalosome complex subunit 3 isof... [more]
gi|302764752|ref|XP_002965797.1|1.081e-3329.18hypothetical protein SELMODRAFT_439255 [Selaginell... [more]
gi|449674513|ref|XP_002166362.2|1.831e-3326.67PREDICTED: COP9 signalosome complex subunit 3-like... [more]
gi|700190518|gb|KGN45722.1|1.847e-3328.79hypothetical protein Csa_6G008050 [Cucumis sativus... [more]
gi|1191646943|gb|OTF98916.1|8.342e-3327.36putative proteasome component (PCI) domain protein... [more]
gi|659081510|ref|XP_008441368.1|1.756e-3227.96PREDICTED: COP9 signalosome complex subunit 3 isof... [more]
gi|1002287838|ref|XP_015648223.1|4.990e-3228.70PREDICTED: COP9 signalosome complex subunit 3 [Ory... [more]
gi|1002866208|ref|XP_006659069.2|1.118e-3128.10PREDICTED: COP9 signalosome complex subunit 3 [Ory... [more]
gi|873227704|emb|CEM17796.1|1.135e-3128.53unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2395rna2395Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications