EWM28239.1, cds2380 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|585110584|gb|EWM28239.1| (endothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein [Nannochloropsis gaditana]) HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0 Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query: 1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS
Sbjct: 1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|298707395|emb|CBJ30030.1| (endothelial monocyte-activating polypeptide II precursor pro-EMAP II family protein [Ectocarpus siliculosus]) HSP 1 Score: 218.009 bits (554), Expect = 9.956e-66 Identity = 109/175 (62.29%), Postives = 135/175 (77.14%), Query Frame = 0
Query: 192 APKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLG--EADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360
AP GELTEL+RLEIR GKI+EI+RHP+AD LYVEK+DLG E +GPRTIVSGLV + E +LLGR+VVVL NLKP +KG+TS GMLLC+SNEDH+ V+PL PP GV LGEL+TF+GH +P GNRAGKA+ R ++ L + A + G +P FMTSKGP+T+ + GSIS
Sbjct: 84 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|873236094|emb|CEL99506.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 202.986 bits (515), Expect = 2.600e-56 Identity = 97/152 (63.82%), Postives = 120/152 (78.95%), Query Frame = 0
Query: 196 ELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTS 347
E ++S LEIR G+ILE+ RHP+AD LYVEK+DLGE + PRTIVSGLV Y ++EEL GR V+VL NLKPRA++GI S GMLLC+S+ D T V PLSPP G ALGEL+TF+G + P PGN+AGKAFDRVAE+L GE +AT++ +PF TS
Sbjct: 454 EKGDISLLEIRVGRILEVERHPDADSLYVEKVDLGEGE-PRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTS 604
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|545371403|ref|XP_005650266.1| (nucleic acid-binding protein [Coccomyxa subellipsoidea C-169] >gi|384252246|gb|EIE25722.1| nucleic acid-binding protein [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 175.252 bits (443), Expect = 1.286e-49 Identity = 87/167 (52.10%), Postives = 117/167 (70.06%), Query Frame = 0
Query: 193 PKGELTE-LSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGS 358
PK E+ + L+IR G+I+++ RHP+AD LYVE+ID+GE + PR IVSGLV + EE+LGR V+VLANLKP L+GI S GM+LCASNE H V+P+ P GV +GE + FEG APEP N K ++++A EL + +A YK IPFMTS GP+T+ +A +
Sbjct: 52 PKKEIIATVDMLDIRVGQIVKVDRHPDADSLYVEEIDIGE-EQPRQIVSGLVAFVPVEEMLGRRVLVLANLKPAKLRGILSSGMVLCASNEAHDKVEPVLVPEGVEVGERVMFEGFEGAPEPVLNPKKKLWEKIAPELTTNAEGVAVYKDIPFMTSNGPITSSLANA 217
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|873225121|emb|CEM24605.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 174.096 bits (440), Expect = 1.941e-48 Identity = 101/244 (41.39%), Postives = 143/244 (58.61%), Query Frame = 0
Query: 129 YRIDYSRDGVPNRLT-------LGGTSREAMIRGLHAGSQYDVAVVRV-----EREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
YR+ Y D L GG R A GL + Y V V V EG +E ++ A +T + GE+ ++SRL++R G+I + +HP+AD LY+E+IDLGE + PRTIVSGLVKY + EEL GR+V+VL NLKPR ++G+ S GML+ AS+E T V+PL PP G A G+ + +G++ P PG+RA +AF++VA +L + + TY T +GP T + G IS
Sbjct: 45 YRVRYGTDSTSAPLASFVFTSMQGGICRLA---GLRPDTDYSVMVYGVGEAAAAHEGGSEALLASAAFKTPR---QEVGEVGDISRLDMRVGRISSVEKHPDADSLYIEQIDLGEGE-PRTIVSGLVKYCSPEELQGRDVIVLCNLKPRMMRGVESRGMLMRASDESKTTVEPLRPPEGSAPGDAVRVDGYQRQPYQPGDRANRAFEKVASKLRTDDQLRGTYDSAVMSTERGPCTATIEGRIS 281
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|1149602805|gb|OON09939.1| (tyrosine-tRNA ligase [Batrachochytrium salamandrivorans]) HSP 1 Score: 171.014 bits (432), Expect = 5.456e-45 Identity = 87/178 (48.88%), Postives = 117/178 (65.73%), Query Frame = 0
Query: 181 RARLETGKVVE----APKGELT-ELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTT 353
R +E K++ APK ++ E+SR++IR G++LE++ HPE D LYVEKIDLGEA GPRTIVSGL KY T+EE GR V+V+ANLK G+ S GM+L ASN D ++V+ L P +GE + FEG +AP+P N K F++ A + ED +A+YKG PF T+ G VT
Sbjct: 334 RNNVEMQKLIAEAYPAPKAKVVAEISRVDIRVGRVLEVALHPERDNLYVEKIDLGEASGPRTIVSGLAKYLTKEEFTGRLVLVVANLKASKFAGVLSEGMVLAASNADKSMVELLEPSDDSVVGEKVFFEGFTSAPDPTLNPKQKVFEKCAADFLTTEDCVASYKGTPFQTAHGEVTV 511
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|298706267|emb|CBJ29292.1| (similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) [Ectocarpus siliculosus]) HSP 1 Score: 164.466 bits (415), Expect = 1.306e-44 Identity = 88/174 (50.57%), Postives = 112/174 (64.37%), Query Frame = 0
Query: 194 KGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEAD----GP--RTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDM-----IATYKGIPFMTSKGPVTTGMA 356
GE+ ELSRLEIR G+ LE S+HP+AD LYVE +D GE + GP +TIVS LV Y E E+ GR VV L NL RA++G+TS GMLLCASN+DH+ V PLSPP G +GELITFE +AP PP + A +A+ E + E +A + G P +TS G T+ +A
Sbjct: 115 SGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPMLTSAGACTSSIA 288
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|633910425|gb|KDD75141.1| (putative tRNA binding domain-containing protein [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 164.466 bits (415), Expect = 1.103e-43 Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0
Query: 203 LEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVT 352
L++R G+I ++ RHP+AD LYVE IDLGEA+ PR IVSGLVK+ EE + GR VVV+ NLKP ++ + S+GM+LCASN+ H V P++PP G+ +GE ITFEG+ A P K F+ +A L + + TYKG+PFMTS GPVT
Sbjct: 223 LDLRVGRITKVERHPDADALYVETIDLGEAE-PRQIVSGLVKFVPEERMQGRMVVVVCNLKPAKMRNVMSYGMVLCASNDAHDAVDPINPPEGLQVGERITFEGYSAEPLAQLPPKKKQFEAIAPHLVTSDKGLCTYKGVPFMTSAGPVT 371
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|545709798|ref|XP_005707208.1| (methionyl-tRNA synthetase isoform 1 [Galdieria sulphuraria] >gi|452823680|gb|EME30688.1| methionyl-tRNA synthetase isoform 1 [Galdieria sulphuraria]) HSP 1 Score: 162.54 bits (410), Expect = 1.485e-43 Identity = 91/238 (38.24%), Postives = 135/238 (56.72%), Query Frame = 0
Query: 126 SHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVV--GRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMA-GSIS 360
S Y++ Y R +P S I Y V + ++R+ +E+++ G+ L+ APK L + S LEIR GKIL +HP AD L VE+ID+GE D PRTIVSGLVK+ E+L+ R+V+VL NLK + ++GI S GMLLC S +D + V+PLSPP +GEL+ F+G P G +A ++F+R+ + L +A + +TS+GP + G++S
Sbjct: 92 SLCYKVHYGRLELPCSWQTSSKSH-ICIDNWKPEVVYRVQIFTMKRDVTSEQLIFQGKLLLKHSTTTVAPKVSLQDASMLEIRVGKILSCKKHPNADTLLVEEIDIGE-DNPRTIVSGLVKHYEPEQLVSRKVLVLCNLKAKKMRGIESKGMLLCGSTKDKSKVEPLSPPEHTQVGELVYFDGVEMKPTESGKQATQSFERIVDFLKTDSKGVALLESRSLLTSQGPCFCSITNGNVS 327
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|831765204|ref|XP_012751412.1| (hypothetical protein SAMD00019534_086010 [Acytostelium subglobosum LB1] >gi|735852044|dbj|GAM25426.1| hypothetical protein SAMD00019534_086010 [Acytostelium subglobosum LB1]) HSP 1 Score: 162.925 bits (411), Expect = 2.597e-43 Identity = 97/190 (51.05%), Postives = 118/190 (62.11%), Query Frame = 0
Query: 175 AEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAG----KAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
AEK G R KVVEAPK E ++SR EIR GKI+E++RH AD LYVEKIDL E GPRTI SGLVK+ EE+ R V+VL NLKPR LKG+ S GM+LCA N DHT V+ + P G LGE +TF E PG + D V ++L +++ATYKG PF TS GP +A S+S
Sbjct: 184 AEKKKGSGR---EKVVEAPKPE--DVSRFEIRVGKIVEVARHESADQLYVEKIDLAEPTGPRTIASGLVKFVPIEEMKDRVVLVLCNLKPRNLKGVKSEGMVLCAGNADHTQVELIDVPAGAKLGERVTFT------EFPGEHDKVLKPEIVDIVLKDLKTNGELVATYKGCPFTTSAGPC---IAKSLS 359 The following BLAST results are available for this feature:
BLAST of EWM28239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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