EWM28239.1, cds2380 (CDS) Nannochloropsis gaditana

Overview
NameEWM28239.1
Unique Namecds2380
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:266974..267028 -
Alignment locationCM002459.1:266508..266740 -
Alignment locationCM002459.1:266019..266294 -
Alignment locationCM002459.1:265653..265777 -
Alignment locationCM002459.1:265359..265474 -
Alignment locationCM002459.1:265084..265277 -
Alignment locationCM002459.1:264823..264906 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28239.1
Productendothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein
Orig transcript idgnl|cribi|Naga_100004g19.9170.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:266974..267028 -
CM002459.1supercontigCM002459.1:266508..266740 -
CM002459.1supercontigCM002459.1:266019..266294 -
CM002459.1supercontigCM002459.1:265653..265777 -
CM002459.1supercontigCM002459.1:265359..265474 -
CM002459.1supercontigCM002459.1:265084..265277 -
CM002459.1supercontigCM002459.1:264823..264906 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0000049tRNA binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR003961FN3_dom
IPR012340NA-bd_OB-fold
IPR013783Ig-like_fold
Homology
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|585110584|gb|EWM28239.1| (endothelial monocyte-activating polypeptide ii precursor pro-emap ii family protein [Nannochloropsis gaditana])

HSP 1 Score: 727.628 bits (1877), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0
Query:    1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
            MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS
Sbjct:    1 MKRIVLMCALVMLLRSASAFTTRALVSGTQKSRMTARKALSVTRHGSSLTRKRRHQGIDRVPFLNQGLAQAAHTRLFSTTEDTAAPSTTSASTEEELPQLLLHWSDSAKTSLRVSWTDTPSSTTPSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|298707395|emb|CBJ30030.1| (endothelial monocyte-activating polypeptide II precursor pro-EMAP II family protein [Ectocarpus siliculosus])

HSP 1 Score: 218.009 bits (554), Expect = 9.956e-66
Identity = 109/175 (62.29%), Postives = 135/175 (77.14%), Query Frame = 0
Query:  192 APKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLG--EADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360
            AP GELTEL+RLEIR GKI+EI+RHP+AD LYVEK+DLG  E +GPRTIVSGLV +  E +LLGR+VVVL NLKP  +KG+TS GMLLC+SNEDH+ V+PL PP GV LGEL+TF+GH  +P   GNRAGKA+ R ++ L   +   A + G  +P  FMTSKGP+T+ + GSIS
Sbjct:   84 APTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSPVDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|873236094|emb|CEL99506.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 202.986 bits (515), Expect = 2.600e-56
Identity = 97/152 (63.82%), Postives = 120/152 (78.95%), Query Frame = 0
Query:  196 ELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTS 347
            E  ++S LEIR G+ILE+ RHP+AD LYVEK+DLGE + PRTIVSGLV Y ++EEL GR V+VL NLKPRA++GI S GMLLC+S+ D T V PLSPP G ALGEL+TF+G  + P  PGN+AGKAFDRVAE+L  GE  +AT++ +PF TS
Sbjct:  454 EKGDISLLEIRVGRILEVERHPDADSLYVEKVDLGEGE-PRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTS 604          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|545371403|ref|XP_005650266.1| (nucleic acid-binding protein [Coccomyxa subellipsoidea C-169] >gi|384252246|gb|EIE25722.1| nucleic acid-binding protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 175.252 bits (443), Expect = 1.286e-49
Identity = 87/167 (52.10%), Postives = 117/167 (70.06%), Query Frame = 0
Query:  193 PKGELTE-LSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGS 358
            PK E+   +  L+IR G+I+++ RHP+AD LYVE+ID+GE + PR IVSGLV +   EE+LGR V+VLANLKP  L+GI S GM+LCASNE H  V+P+  P GV +GE + FEG   APEP  N   K ++++A EL    + +A YK IPFMTS GP+T+ +A +
Sbjct:   52 PKKEIIATVDMLDIRVGQIVKVDRHPDADSLYVEEIDIGE-EQPRQIVSGLVAFVPVEEMLGRRVLVLANLKPAKLRGILSSGMVLCASNEAHDKVEPVLVPEGVEVGERVMFEGFEGAPEPVLNPKKKLWEKIAPELTTNAEGVAVYKDIPFMTSNGPITSSLANA 217          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|873225121|emb|CEM24605.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 174.096 bits (440), Expect = 1.941e-48
Identity = 101/244 (41.39%), Postives = 143/244 (58.61%), Query Frame = 0
Query:  129 YRIDYSRDGVPNRLT-------LGGTSREAMIRGLHAGSQYDVAVVRV-----EREGLAEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
            YR+ Y  D     L         GG  R A   GL   + Y V V  V       EG +E ++  A  +T +      GE+ ++SRL++R G+I  + +HP+AD LY+E+IDLGE + PRTIVSGLVKY + EEL GR+V+VL NLKPR ++G+ S GML+ AS+E  T V+PL PP G A G+ +  +G++  P  PG+RA +AF++VA +L   + +  TY      T +GP T  + G IS
Sbjct:   45 YRVRYGTDSTSAPLASFVFTSMQGGICRLA---GLRPDTDYSVMVYGVGEAAAAHEGGSEALLASAAFKTPR---QEVGEVGDISRLDMRVGRISSVEKHPDADSLYIEQIDLGEGE-PRTIVSGLVKYCSPEELQGRDVIVLCNLKPRMMRGVESRGMLMRASDESKTTVEPLRPPEGSAPGDAVRVDGYQRQPYQPGDRANRAFEKVASKLRTDDQLRGTYDSAVMSTERGPCTATIEGRIS 281          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|1149602805|gb|OON09939.1| (tyrosine-tRNA ligase [Batrachochytrium salamandrivorans])

HSP 1 Score: 171.014 bits (432), Expect = 5.456e-45
Identity = 87/178 (48.88%), Postives = 117/178 (65.73%), Query Frame = 0
Query:  181 RARLETGKVVE----APKGELT-ELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTT 353
            R  +E  K++     APK ++  E+SR++IR G++LE++ HPE D LYVEKIDLGEA GPRTIVSGL KY T+EE  GR V+V+ANLK     G+ S GM+L ASN D ++V+ L P     +GE + FEG  +AP+P  N   K F++ A +    ED +A+YKG PF T+ G VT 
Sbjct:  334 RNNVEMQKLIAEAYPAPKAKVVAEISRVDIRVGRVLEVALHPERDNLYVEKIDLGEASGPRTIVSGLAKYLTKEEFTGRLVLVVANLKASKFAGVLSEGMVLAASNADKSMVELLEPSDDSVVGEKVFFEGFTSAPDPTLNPKQKVFEKCAADFLTTEDCVASYKGTPFQTAHGEVTV 511          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|298706267|emb|CBJ29292.1| (similar to Tyrosyl-tRNA synthetase, cytoplasmic (Tyrosyl--tRNA ligase) (TyrRS) [Ectocarpus siliculosus])

HSP 1 Score: 164.466 bits (415), Expect = 1.306e-44
Identity = 88/174 (50.57%), Postives = 112/174 (64.37%), Query Frame = 0
Query:  194 KGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEAD----GP--RTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDM-----IATYKGIPFMTSKGPVTTGMA 356
             GE+ ELSRLEIR G+ LE S+HP+AD LYVE +D GE +    GP  +TIVS LV Y  E E+ GR VV L NL  RA++G+TS GMLLCASN+DH+ V PLSPP G  +GELITFE   +AP PP + A +A+    E +   E       +A + G P +TS G  T+ +A
Sbjct:  115 SGEMMELSRLEIRVGRCLECSKHPDADSLYVETVDFGEGEPRCLGPVDKTIVSRLVAYVPENEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFESVLSAPAPPSSGASRAWSATMEGMKTAEATADGVGVAGWDGRPMLTSAGACTSSIA 288          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|633910425|gb|KDD75141.1| (putative tRNA binding domain-containing protein [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 164.466 bits (415), Expect = 1.103e-43
Identity = 79/150 (52.67%), Postives = 105/150 (70.00%), Query Frame = 0
Query:  203 LEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVT 352
            L++R G+I ++ RHP+AD LYVE IDLGEA+ PR IVSGLVK+  EE + GR VVV+ NLKP  ++ + S+GM+LCASN+ H  V P++PP G+ +GE ITFEG+ A P        K F+ +A  L   +  + TYKG+PFMTS GPVT
Sbjct:  223 LDLRVGRITKVERHPDADALYVETIDLGEAE-PRQIVSGLVKFVPEERMQGRMVVVVCNLKPAKMRNVMSYGMVLCASNDAHDAVDPINPPEGLQVGERITFEGYSAEPLAQLPPKKKQFEAIAPHLVTSDKGLCTYKGVPFMTSAGPVT 371          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|545709798|ref|XP_005707208.1| (methionyl-tRNA synthetase isoform 1 [Galdieria sulphuraria] >gi|452823680|gb|EME30688.1| methionyl-tRNA synthetase isoform 1 [Galdieria sulphuraria])

HSP 1 Score: 162.54 bits (410), Expect = 1.485e-43
Identity = 91/238 (38.24%), Postives = 135/238 (56.72%), Query Frame = 0
Query:  126 SHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVV--GRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMA-GSIS 360
            S  Y++ Y R  +P        S    I        Y V +  ++R+  +E+++  G+  L+      APK  L + S LEIR GKIL   +HP AD L VE+ID+GE D PRTIVSGLVK+   E+L+ R+V+VL NLK + ++GI S GMLLC S +D + V+PLSPP    +GEL+ F+G    P   G +A ++F+R+ + L      +A  +    +TS+GP    +  G++S
Sbjct:   92 SLCYKVHYGRLELPCSWQTSSKSH-ICIDNWKPEVVYRVQIFTMKRDVTSEQLIFQGKLLLKHSTTTVAPKVSLQDASMLEIRVGKILSCKKHPNADTLLVEEIDIGE-DNPRTIVSGLVKHYEPEQLVSRKVLVLCNLKAKKMRGIESKGMLLCGSTKDKSKVEPLSPPEHTQVGELVYFDGVEMKPTESGKQATQSFERIVDFLKTDSKGVALLESRSLLTSQGPCFCSITNGNVS 327          
BLAST of EWM28239.1 vs. NCBI_GenBank
Match: gi|831765204|ref|XP_012751412.1| (hypothetical protein SAMD00019534_086010 [Acytostelium subglobosum LB1] >gi|735852044|dbj|GAM25426.1| hypothetical protein SAMD00019534_086010 [Acytostelium subglobosum LB1])

HSP 1 Score: 162.925 bits (411), Expect = 2.597e-43
Identity = 97/190 (51.05%), Postives = 118/190 (62.11%), Query Frame = 0
Query:  175 AEKVVGRARLETGKVVEAPKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAG----KAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTTGMAGSIS 360
            AEK  G  R    KVVEAPK E  ++SR EIR GKI+E++RH  AD LYVEKIDL E  GPRTI SGLVK+   EE+  R V+VL NLKPR LKG+ S GM+LCA N DHT V+ +  P G  LGE +TF       E PG        +  D V ++L    +++ATYKG PF TS GP    +A S+S
Sbjct:  184 AEKKKGSGR---EKVVEAPKPE--DVSRFEIRVGKIVEVARHESADQLYVEKIDLAEPTGPRTIASGLVKFVPIEEMKDRVVLVLCNLKPRNLKGVKSEGMVLCAGNADHTQVELIDVPAGAKLGERVTFT------EFPGEHDKVLKPEIVDIVLKDLKTNGELVATYKGCPFTTSAGPC---IAKSLS 359          
The following BLAST results are available for this feature:
BLAST of EWM28239.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110584|gb|EWM28239.1|0.000e+0100.00endothelial monocyte-activating polypeptide ii pre... [more]
gi|298707395|emb|CBJ30030.1|9.956e-6662.29endothelial monocyte-activating polypeptide II pre... [more]
gi|873236094|emb|CEL99506.1|2.600e-5663.82unnamed protein product [Vitrella brassicaformis C... [more]
gi|545371403|ref|XP_005650266.1|1.286e-4952.10nucleic acid-binding protein [Coccomyxa subellipso... [more]
gi|873225121|emb|CEM24605.1|1.941e-4841.39unnamed protein product [Vitrella brassicaformis C... [more]
gi|1149602805|gb|OON09939.1|5.456e-4548.88tyrosine-tRNA ligase [Batrachochytrium salamandriv... [more]
gi|298706267|emb|CBJ29292.1|1.306e-4450.57similar to Tyrosyl-tRNA synthetase, cytoplasmic (T... [more]
gi|633910425|gb|KDD75141.1|1.103e-4352.67putative tRNA binding domain-containing protein [H... [more]
gi|545709798|ref|XP_005707208.1|1.485e-4338.24methionyl-tRNA synthetase isoform 1 [Galdieria sul... [more]
gi|831765204|ref|XP_012751412.1|2.597e-4351.05hypothetical protein SAMD00019534_086010 [Acytoste... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2388rna2388Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications