EWM28278.1, cds2377 (CDS) Nannochloropsis gaditana

Overview
NameEWM28278.1
Unique Namecds2377
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:259759..260111 -
Alignment locationCM002459.1:259588..259645 -
Alignment locationCM002459.1:259343..259519 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28278.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g16.9209.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:259759..260111 -
CM002459.1supercontigCM002459.1:259588..259645 -
CM002459.1supercontigCM002459.1:259343..259519 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|585110623|gb|EWM28278.1| (hypothetical protein Naga_100004g16 [Nannochloropsis gaditana])

HSP 1 Score: 407.142 bits (1045), Expect = 6.854e-144
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MLQRNSSFEVRVNVAGLLGGCCPVGAAPRVGKVLKEALGTETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQSITESYSKVVDRYAGWSHVVGSRGETWRMSPSETARTVEDQEEFTMYAFACIRRDGNNQCDGTSAPITKSTSIVRAWF 195
            MLQRNSSFEVRVNVAGLLGGCCPVGAAPRVGKVLKEALGTETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQSITESYSKVVDRYAGWSHVVGSRGETWRMSPSETARTVEDQEEFTMYAFACIRRDGNNQCDGTSAPITKSTSIVRAWF
Sbjct:    1 MLQRNSSFEVRVNVAGLLGGCCPVGAAPRVGKVLKEALGTETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQSITESYSKVVDRYAGWSHVVGSRGETWRMSPSETARTVEDQEEFTMYAFACIRRDGNNQCDGTSAPITKSTSIVRAWF 195          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|553182201|ref|XP_005853697.1| (armadillo repeat-containing protein [Nannochloropsis gaditana CCMP526] >gi|422295369|gb|EKU22668.1| armadillo repeat-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 132.109 bits (331), Expect = 5.156e-37
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:   55 MDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            MDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ
Sbjct:    1 MDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 63          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|298704868|emb|CBJ28385.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.2554 bits (186), Expect = 8.838e-13
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 0
Query:   30 VGKVLKEALGTETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQS 118
            +G+ L +A+  + HVL  A  LNA+MD++G D LDA F+       L   +PAFR K K E    GRDA+ H+KETALN  RF+KYKQ+
Sbjct:  714 LGRALVQAM-EDPHVLVQAEALNAVMDVYGDDGLDAAFRASGAPAALAAGVPAFRRKVKQEGKALGRDAMCHLKETALNAGRFVKYKQA 801          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|813219518|ref|XP_012211136.1| (hypothetical protein SPRG_16437, partial [Saprolegnia parasitica CBS 223.65] >gi|641523249|gb|KDO18162.1| hypothetical protein SPRG_16437, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 63.929 bits (154), Expect = 3.023e-10
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0
Query:   40 TETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQS 118
            ++T +     +LNAL D++  ++ D VF  L  L  L  V    + K K EA    RD VGH KET LNL RFIKYK+ 
Sbjct:    2 SDTDLQVVCEVLNALFDIYSDEQYDEVFFRLNFLASLEHVSAGMKAKIKAEAKTLDRDLVGHAKETRLNLLRFIKYKKQ 80          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|813178536|ref|XP_012205737.1| (hypothetical protein SPRG_10784 [Saprolegnia parasitica CBS 223.65] >gi|641529413|gb|KDO23589.1| hypothetical protein SPRG_10784 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 68.1662 bits (165), Expect = 5.324e-10
Identity = 46/118 (38.98%), Postives = 60/118 (50.85%), Query Frame = 0
Query:    6 SSFEVRVNVAGLLGGCCPVGAAPRV---GKVLKEALGT---ETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            +S E R     +LG    +G  P      +VL + LGT   +T +     +LNAL D++  ++ D VF  L  L  L  V    + K K EA    RD VGH KET LNL RFIKYK+
Sbjct:  525 ASIEARTAAIRVLG---TLGKKPHSLAENQVLGQCLGTLLSDTDLQVVCEVLNALFDIYSDEQYDEVFFRLNFLASLEHVSAGMKAKIKAEAKTLDRDLVGHAKETRLNLLRFIKYKK 639          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|695376667|ref|XP_009515834.1| (hypothetical protein PHYSODRAFT_552294 [Phytophthora sojae] >gi|348688745|gb|EGZ28559.1| hypothetical protein PHYSODRAFT_552294 [Phytophthora sojae])

HSP 1 Score: 66.2402 bits (160), Expect = 6.984e-10
Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = 0
Query:    9 EVRVNVAGLLGG----CCPVGAAPRVGKVLKEALGTETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            E R+N  G++G     C        VG+ L   L  ++ +   A  LNA+ D++  +E D  F  L  L  L +   A + K K E  +  R  V HVKET LNL RFIKYK+
Sbjct:  107 ESRLNAIGMIGCVGKRCSSAAEKEAVGRALVSRLD-DSSLEVVAETLNAIFDVYDDEEFDNTFCALNFLSALERTSSALKAKLKAEQKQLDRALVAHVKETRLNLLRFIKYKK 218          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|1173953004|gb|OQS00575.1| (HEAT repeat containing 3 [Thraustotheca clavata])

HSP 1 Score: 67.0106 bits (162), Expect = 1.145e-9
Identity = 45/119 (37.82%), Postives = 59/119 (49.58%), Query Frame = 0
Query:    5 NSSFEVRVNVAGLLGGCCPVGAAPRV---GKVLKEALG---TETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            N+S E R     +LG    +G  P      KVL   +G    +T +     +LNAL D++  +  D VF EL  L  L  V    + K K+EA    RD + H KET LNL RFIKYK+
Sbjct:  534 NASVEARTGAIRVLGS---LGQKPHSLGENKVLGTCMGQLLADTDLQVVCEVLNALFDIYSDETYDQVFFELNFLATLEHVGAGMKAKIKSEAKSLDRDLIAHSKETRLNLLRFIKYKK 649          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|698797436|ref|XP_009831747.1| (hypothetical protein H257_07801 [Aphanomyces astaci] >gi|574113538|gb|ETV79028.1| hypothetical protein H257_07801 [Aphanomyces astaci])

HSP 1 Score: 67.0106 bits (162), Expect = 1.173e-9
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 0
Query:    3 QRNSSFEVRVNVAGLLGGCCPVGAAPRVGKVLKEALGT---ETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            Q + S E R +   LLG       +    KVL   L     +T +     +LNAL D++  ++ D+VF E+K L  L  V    + K K+EA    R+ V H KET LNL RFIKYK+
Sbjct:  546 QASPSVEARTSAVRLLGTLGKKAHSLPENKVLAVCLSAVLRDTDLAVVCEVLNALFDIYADEQYDSVFHEVKFLTSLEHVGAGMKSKIKSEAKSLDRELVAHAKETRLNLLRFIKYKK 663          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|673035768|ref|XP_008871845.1| (hypothetical protein H310_08023 [Aphanomyces invadans] >gi|574472284|gb|ETV99289.1| hypothetical protein H310_08023 [Aphanomyces invadans])

HSP 1 Score: 66.6254 bits (161), Expect = 1.649e-9
Identity = 45/121 (37.19%), Postives = 61/121 (50.41%), Query Frame = 0
Query:    3 QRNSSFEVRVNVAGLLGGCCPVGAAPRV---GKVLKEALGT---ETHVLASASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            Q + S E R     L+G    +G  P      KVL   L T   +T +     +LNAL D++  ++ DAVF E+  L  L  V    + K K+EA    R+ + H KET LNL RFIKYK+
Sbjct:  540 QASPSVEARSCAVRLIGT---LGKKPHSLPENKVLATCLSTVLRDTDLAVVCEVLNALFDIYSDEQYDAVFHEVNFLTALEHVSAGMKSKIKSEAKSLDRELIAHAKETRLNLLRFIKYKK 657          
BLAST of EWM28278.1 vs. NCBI_GenBank
Match: gi|1214713679|gb|OWZ24563.1| (hypothetical protein PHMEG_000387 [Phytophthora megakarya])

HSP 1 Score: 66.6254 bits (161), Expect = 1.781e-9
Identity = 45/121 (37.19%), Postives = 61/121 (50.41%), Query Frame = 0
Query:    7 SFEVRVNVAGLLGGCCPVGAAPRVGKVLKEALGTETHVLAS----------ASLLNALMDLFGRDELDAVFQELKMLPMLTKVLPAFRLKAKTEAGKHGRDAVGHVKETALNLARFIKYKQ 117
            S E R+N  G++G      ++P      KEA+G   H L S          A  LNA+ D++  +E D  F+ L +L  L +   A + K K E  +  R  V HVKET LNL RFIKYK+
Sbjct:  539 SAESRLNAIGMIGCVGKRCSSP----AEKEAVG---HALVSRLDDSSLEVVAETLNAIFDVYDDEEFDDTFRALNLLSALERTSSALKAKLKAEQKQLDRALVAHVKETRLNLLRFIKYKK 652          
The following BLAST results are available for this feature:
BLAST of EWM28278.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110623|gb|EWM28278.1|6.854e-144100.00hypothetical protein Naga_100004g16 [Nannochlorops... [more]
gi|553182201|ref|XP_005853697.1|5.156e-37100.00armadillo repeat-containing protein [Nannochlorops... [more]
gi|298704868|emb|CBJ28385.1|8.838e-1348.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|813219518|ref|XP_012211136.1|3.023e-1043.04hypothetical protein SPRG_16437, partial [Saproleg... [more]
gi|813178536|ref|XP_012205737.1|5.324e-1038.98hypothetical protein SPRG_10784 [Saprolegnia paras... [more]
gi|695376667|ref|XP_009515834.1|6.984e-1036.28hypothetical protein PHYSODRAFT_552294 [Phytophtho... [more]
gi|1173953004|gb|OQS00575.1|1.145e-937.82HEAT repeat containing 3 [Thraustotheca clavata][more]
gi|698797436|ref|XP_009831747.1|1.173e-937.29hypothetical protein H257_07801 [Aphanomyces astac... [more]
gi|673035768|ref|XP_008871845.1|1.649e-937.19hypothetical protein H310_08023 [Aphanomyces invad... [more]
gi|1214713679|gb|OWZ24563.1|1.781e-937.19hypothetical protein PHMEG_000387 [Phytophthora me... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2385rna2385Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications