EWM28246.1, cds2369 (CDS) Nannochloropsis gaditana

Overview
NameEWM28246.1
Unique Namecds2369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:241122..242033 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28246.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g7.9177.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:241122..242033 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR0133286PGD_dom_2
Homology
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|585110591|gb|EWM28246.1| (hypothetical protein Naga_100004g7 [Nannochloropsis gaditana])

HSP 1 Score: 625.935 bits (1613), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MVNIFRFVILFILQLPAFVQGFVIPRSWVPSCKARESTVLMTATTQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303
            MVNIFRFVILFILQLPAFVQGFVIPRSWVPSCKARESTVLMTATTQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL
Sbjct:    1 MVNIFRFVILFILQLPAFVQGFVIPRSWVPSCKARESTVLMTATTQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|873227115|emb|CEM19467.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 332.798 bits (852), Expect = 1.587e-111
Identity = 154/258 (59.69%), Postives = 204/258 (79.07%), Query Frame = 0
Query:   46 QHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303
            + V+VG+GR+G  L ++ G S V+VGR+DP+P +  GPIYV TRND LA++++KTP +RR+DLVFLQNGML PFL++Y L+DNT  L+YFAVA+ G+ P DG TD+NP GLTAV G+WA DF   L    L C +L+K  F+A+M+EKL+WI+AFMLVG+ + G+TVGEVE+SHR++V  LI ELK+A E    +TFQDG+ +RLC+Y RSV+HFPTAVKEF WRNGFFW LS++A+  G ADPCP H+ +L+QVGA+
Sbjct:    5 RDVIVGRGRIGSLLYELGGRSGVLVGRDDPIPADVEGPIYVCTRNDALASIIDKTPASRREDLVFLQNGMLEPFLQSYALQDNTMGLIYFAVAKLGEPPIDGKTDVNPEGLTAVNGKWANDFAALLRNGQLSCKVLEKAVFRASMYEKLIWIAAFMLVGTKY-GVTVGEVEQSHRQEVTELIGELKRASE-GLGITFQDGMVERLCSYTRSVSHFPTAVKEFEWRNGFFWDLSKQAMDGGRADPCPIHTRLLQQVGAV 260          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|299116682|emb|CBN74827.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 308.916 bits (790), Expect = 1.704e-101
Identity = 146/266 (54.89%), Postives = 191/266 (71.80%), Query Frame = 0
Query:   35 RESTVLMTATTQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
            R+ +   TATT   +VG GR+G AL  M G    +VGR D +P +G GPIYV TRNDDL  V+ +TP ARR+DLVFLQNG+LGP L+ +GL  NTQAL+YFAV++KG+ P DG+TD NP GLT+  G+WA + +E L K GL CH L + R+ A M+EK +WI AFM+ G+ H    +G+V+  H ++V  LI EL+KA+E    V F+DGV+DRLCAY+RSVA++P AVKEF WRNGFFW +SE+A   G  DPCP H+ +L+QV
Sbjct:   44 RQRSQRPTATTMAAIVGGGRIGCALYDMGGGGDTLVGRGDIIP-DGDGPIYVCTRNDDLEDVISRTPPARREDLVFLQNGVLGPLLEKHGLAKNTQALIYFAVSKKGEPPIDGITDANPEGLTSTCGKWAGELKERLAKGGLTCHELAEDRYTARMYEKHIWICAFMVAGAAH-KCNMGQVDADHADEVRTLIGELQKAIEVEYGVAFEDGVKDRLCAYSRSVANYPAAVKEFSWRNGFFWDISEKARKEGTEDPCPLHTKLLRQV 307          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|303280695|ref|XP_003059640.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226459476|gb|EEH56772.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 300.827 bits (769), Expect = 7.873e-99
Identity = 151/257 (58.75%), Postives = 180/257 (70.04%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIE-GTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303
            +++G GRVG+AL  M     V+V R D  P    TGPIYV TRND L  VV+ TPEARRKDLVFLQNGML P+L   GL  NTQALVYFAVA+  + PTDG+TD NP GLTA  GEWA  F   L   GL+CH+LD   F+A+MFEKL+WI AFM VG+ H G TVG+VE +H+E+V ALI EL    E    V F +G   RL AYAR+V+HFPTAVKEF WRNGFF  +SE  +  G  DP P+H+A++KQVGAL
Sbjct:   16 IIIGGGRVGQALFDMGVDGDVIVKRGDAFPSSPATGPIYVCTRNDALQGVVDATPEARRKDLVFLQNGMLQPWLDARGLGGNTQALVYFAVAKMNEKPTDGITDANPEGLTAANGEWADAFAARLRSGGLRCHVLDDDAFRASMFEKLIWICAFMGVGAAHPGATVGDVESAHKEEVEALIAELVAGSESAKGVRFAEGTIPRLAAYARAVSHFPTAVKEFEWRNGFFCGISERELAAGRLDPFPTHTALMKQVGAL 272          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|971513035|dbj|GAQ85165.1| (hypothetical protein KFL_002220090 [Klebsormidium nitens])

HSP 1 Score: 302.368 bits (773), Expect = 2.065e-98
Identity = 152/287 (52.96%), Postives = 192/287 (66.90%), Query Frame = 0
Query:   18 FVQGFVI--PRSWVPSCKARESTVLMTATTQHVVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGA 302
            FV  F+   P   V     +   V   A    V+VG GRVG+AL KM G   V+V R + VP++ TGPI +ATRND L  V+E TP  RR+DLVF+QNGML P+L + GLE  TQ LVYFAVA+ GD P DG TD+NP GLTA  G+WA      L  AGL C +LD   F+ +M EKL+WISAFMLVG  +G  +VG+VE  +R++V ALI EL    E+   VT  +G+E+RLCAYARSVAH+PTAVKEF WRNG+F+ LS++ V    +DPCP H+  L++VGA
Sbjct:   64 FVPKFLAASPAGQVTPAAGKGRAVTSMAVEPAVIVGYGRVGQALEKMGGEKDVVVKRGEKVPVDSTGPILIATRNDALDRVIEGTPADRREDLVFMQNGMLEPYLASKGLEAATQVLVYFAVAKAGDAPMDGKTDVNPEGLTAATGKWAEAVAARLHSAGLSCKVLDTAAFRKSMLEKLIWISAFMLVGVKNGNASVGDVEAKYRDEVAALIAELAAVAEKETGVTLDEGLEERLCAYARSVAHYPTAVKEFEWRNGWFFDLSKKTVDATGSDPCPLHTCWLRRVGA 350          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|1063510849|ref|XP_007023535.2| (PREDICTED: uncharacterized protein LOC18595499 isoform X1 [Theobroma cacao])

HSP 1 Score: 300.056 bits (767), Expect = 5.421e-98
Identity = 141/253 (55.73%), Postives = 182/253 (71.94%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
            V+VG GRVG+AL  M     ++V R +PVP++  GPI V TRNDDL +V+E TP++R  DLVF QNGML P+L++ GL D  Q L YFAV++ G+ P DG TD NP GLTA YG+WA+     L   GL C +LDK  FQ  M EKL+WISAFMLVG+ H G TVG+VEK +R +V +LI EL  A      +TF++ +EDRLCAY+R+VAHFPTAVKEF WRNG+F+ +SE+A+  G+ DPCP H+A LK++
Sbjct:   56 VIVGGGRVGKALQDMGKGDDLLVKRGEPVPLDFEGPILVCTRNDDLESVLEATPKSRWDDLVFFQNGMLEPWLQSKGLNDADQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGKWASAIATRLHAGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGAHHPGATVGDVEKEYRSEVSSLIAELASAAAGEKGITFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYSISEKAIAEGKPDPCPLHTAWLKEL 308          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|1026766077|gb|OAE26673.1| (hypothetical protein AXG93_4118s1020 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 298.13 bits (762), Expect = 7.987e-98
Identity = 141/269 (52.42%), Postives = 182/269 (67.66%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDL-------------VFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQVGAL 303
            V+VG GRVG AL KM G + V+V R +P+P +G GPI + TRND LA +++ TP +RR+++             + L NGML PFL++ GL   TQ LVYFAVA+ GD P DG TD+NP GLTA  G+WA+     L  AGL C +LD   F+    EKL+WISAFMLVG+ H G T G+VE  +RE+VV+LIQEL    E      F  G+E+RLCAYARSV+H+PTAVKEF WRNG+F+ +S+ A+  GE DPCP H+A LK+VG +
Sbjct:    8 VIVGAGRVGSALEKMGGGNDVLVKRGEPIPADGQGPIIICTRNDSLAGIIDATPASRREEIGLLFTLVINETFQILLNNGMLEPFLESKGLASATQVLVYFAVAKAGDAPIDGKTDMNPEGLTASTGKWASAVAARLESAGLSCKVLDAEEFKKPQLEKLIWISAFMLVGTRHPGATCGDVESKYREEVVSLIQELAAVAESVKNTKFDSGIEERLCAYARSVSHYPTAVKEFEWRNGWFYDISQRALSNGETDPCPLHTAWLKEVGVV 276          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|1072901414|ref|XP_018470672.1| (PREDICTED: uncharacterized protein LOC108842271 [Raphanus sativus])

HSP 1 Score: 298.901 bits (764), Expect = 1.612e-97
Identity = 139/253 (54.94%), Postives = 182/253 (71.94%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
            V+VG GRVG+AL +M     V+V R +PVP++  GPI V TRNDDL AV+E TP++R KDLVF QNGM+ P+ ++ GL D  Q L YFAV++ G+ P DG+TD NP GLTA YG+WA+D    L   GL C +LDK  FQ  M EKL+WI AFMLVG+ H G +VG VEK +R++V  LIQEL  A      +TF+D + +RLCAY+R+VAHFPTAVKEF WRNG+F+ LS++A+  G+ DPCP H+  L+++
Sbjct:   55 VIVGGGRVGQALQEMGSGDDVLVKRGEPVPVDFEGPILVCTRNDDLDAVLEATPQSRWKDLVFFQNGMMEPWFESKGLGDADQVLAYFAVSKLGEPPVDGITDTNPEGLTAAYGKWASDVAARLQSGGLSCKVLDKESFQKQMLEKLIWICAFMLVGARHPGASVGMVEKEYRDEVARLIQELAAAAAAEKGLTFEDNMVERLCAYSRAVAHFPTAVKEFKWRNGWFYSLSQKAIEEGKPDPCPLHTEWLREL 307          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|1204927855|ref|XP_021297066.1| (uncharacterized protein LOC110426216 isoform X1 [Herrania umbratica])

HSP 1 Score: 298.13 bits (762), Expect = 3.100e-97
Identity = 141/253 (55.73%), Postives = 180/253 (71.15%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
            V+VG GRVG+AL  M     ++V R +PVP++  GPI V TRNDDL +V+E TP++R  DLVF QNGML P+L++ GL D  Q L YFAV++ G+ P DG TD NP GLTA YG+WA+     L   GL C +LDK  FQ  M EKL+WISAFMLVG+ H G TVG+VEK  R +V +LI EL  A      +TF++ +EDRLCAY+R+VAHFPTAVKEF WRNG+F+ +SE+A+  G  DPCP H+A LK++
Sbjct:   56 VIVGGGRVGKALQDMGKGDDLLVKRGEPVPLDFEGPILVCTRNDDLESVLEATPKSRWNDLVFFQNGMLEPWLQSKGLNDADQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGKWASAIATRLHAGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHHGATVGDVEKEFRPEVSSLIAELASAAAGEKGITFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYSISEKAIAEGRPDPCPLHTAWLKEL 308          
BLAST of EWM28246.1 vs. NCBI_GenBank
Match: gi|508778901|gb|EOY26157.1| (Uncharacterized protein TCM_027572 isoform 2 [Theobroma cacao])

HSP 1 Score: 297.745 bits (761), Expect = 3.940e-97
Identity = 141/253 (55.73%), Postives = 181/253 (71.54%), Query Frame = 0
Query:   48 VVVGKGRVGEALGKMLGSSTVMVGRNDPVPIEGTGPIYVATRNDDLAAVVEKTPEARRKDLVFLQNGMLGPFLKTYGLEDNTQALVYFAVARKGDVPTDGVTDLNPNGLTAVYGEWATDFEETLTKAGLKCHILDKGRFQAAMFEKLMWISAFMLVGSVHGGITVGEVEKSHREDVVALIQELKKALERHAKVTFQDGVEDRLCAYARSVAHFPTAVKEFPWRNGFFWKLSEEAVGRGEADPCPSHSAMLKQV 300
            V+VG GRVG+AL  M     ++V R +PVP++  GPI V TRNDDL +V+E TP++R  DLVF QNGML P+L++ GL D  Q L YFAV++ G+ P DG TD NP GLTA YG+WA+     L   GL C +LDK  FQ  M EKL+WISAFMLVG+ H G TVG+VEK +R +V +LI EL  A      +TF+  +EDRLCAY+R+VAHFPTAVKEF WRNG+F+ +SE+A+  G+ DPCP H+A LK++
Sbjct:   56 VIVGGGRVGKALQDMGKGDDLLVKRGEPVPLDFEGPILVCTRNDDLESVLEATPKSRWDDLVFFQNGMLEPWLQSKGLNDADQVLAYFAVSKLGEPPVDGKTDTNPEGLTAAYGKWASAIATRLHAGGLSCKVLDKEAFQKQMLEKLIWISAFMLVGARHPGATVGDVEKEYRSEVSSLIAELASAAAGEKGITFEGAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFYSISEKAIVEGKPDPCPLHTAWLKEL 308          
The following BLAST results are available for this feature:
BLAST of EWM28246.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110591|gb|EWM28246.1|0.000e+0100.00hypothetical protein Naga_100004g7 [Nannochloropsi... [more]
gi|873227115|emb|CEM19467.1|1.587e-11159.69unnamed protein product [Vitrella brassicaformis C... [more]
gi|299116682|emb|CBN74827.1|1.704e-10154.89conserved unknown protein [Ectocarpus siliculosus][more]
gi|303280695|ref|XP_003059640.1|7.873e-9958.75predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|971513035|dbj|GAQ85165.1|2.065e-9852.96hypothetical protein KFL_002220090 [Klebsormidium ... [more]
gi|1063510849|ref|XP_007023535.2|5.421e-9855.73PREDICTED: uncharacterized protein LOC18595499 iso... [more]
gi|1026766077|gb|OAE26673.1|7.987e-9852.42hypothetical protein AXG93_4118s1020 [Marchantia p... [more]
gi|1072901414|ref|XP_018470672.1|1.612e-9754.94PREDICTED: uncharacterized protein LOC108842271 [R... [more]
gi|1204927855|ref|XP_021297066.1|3.100e-9755.73uncharacterized protein LOC110426216 isoform X1 [H... [more]
gi|508778901|gb|EOY26157.1|3.940e-9755.73Uncharacterized protein TCM_027572 isoform 2 [Theo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2377rna2377Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications