EWM28318.1, cds2360 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|585110666|gb|EWM28318.1| (Ribosomal protein S7, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 443.351 bits (1139), Expect = 1.576e-157 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 Query: 1 MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR Sbjct: 1 MAEVEIDETVPYEPADMAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|298712679|emb|CBJ48704.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 343.969 bits (881), Expect = 5.324e-118 Identity = 164/201 (81.59%), Postives = 184/201 (91.54%), Query Frame = 0 Query: 16 DMAVAFEDNS-ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 D +A E++ +D++LF KW+ D+EI+D+SLEDYI V GK ATYLPHTAGRYQKKRFRKA CP+VERL +LMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR Sbjct: 33 DAPLAVEESGISDVQLFNKWTFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|669161044|ref|XP_008616084.1| (40S ribosomal protein S5 [Saprolegnia diclina VS20] >gi|530732249|gb|EQC30491.1| 40S ribosomal protein S5 [Saprolegnia diclina VS20] >gi|1173949907|gb|OQR97903.1| 40S ribosomal protein S5-2 [Achlya hypogyna]) HSP 1 Score: 338.576 bits (867), Expect = 2.244e-116 Identity = 155/193 (80.31%), Postives = 180/193 (93.26%), Query Frame = 0 Query: 23 DNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 + +A++KLF KW+ D+++ D++L DY+ V+GK AT+LPHTA RYQKKRFRKAQCP+VERLANSLMR GRNSGKKL ANRI++HTLEIIHLLTDQNP+QVVVD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL+TTGARE+SFRN+KTIAE LADE+INAAKGSSNSYAIKKKDEVERVAKANR Sbjct: 3 ETAAEVKLFNKWTYDDIKVNDVALIDYVAVSGKAATFLPHTAQRYQKKRFRKAQCPIVERLANSLMRHGRNSGKKLMANRIIRHTLEIIHLLTDQNPLQVVVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLTTGAREASFRNVKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 195
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|1173930540|gb|OQR83329.1| (40S ribosomal protein S5-2 [Thraustotheca clavata]) HSP 1 Score: 337.421 bits (864), Expect = 5.277e-116 Identity = 155/193 (80.31%), Postives = 179/193 (92.75%), Query Frame = 0 Query: 23 DNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 + +A++KLF KW+ DV++ D++L DY+ V GK AT+LPHTA RYQKKRFRKAQCP+VERL+NSLMR GRNSGKKL ANRIV+HTLEIIHLLTDQNP+QVVVD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL+TTGARE+SFRN+KTIAE LADE++NAAKGSSNSYAIKKKDEVERVAKANR Sbjct: 3 ETAAEVKLFNKWTYDDVKVNDVALIDYVAVTGKAATFLPHTAQRYQKKRFRKAQCPIVERLSNSLMRHGRNSGKKLMANRIVRHTLEIIHLLTDQNPLQVVVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLTTGAREASFRNVKTIAECLADELVNAAKGSSNSYAIKKKDEVERVAKANR 195
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|303285973|ref|XP_003062276.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226455793|gb|EEH53095.1| predicted protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 328.561 bits (841), Expect = 1.591e-112 Identity = 152/190 (80.00%), Postives = 175/190 (92.11%), Query Frame = 0 Query: 26 ADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 ++IKLFGKW+ DVEI D+SLEDYIGV K A Y+PHTAGRY +KRFRKAQCP+VERL N+LM GRN+GKKL A RIVKHT++IIHLL+DQNP+QV+VD+IINAGPRED+TRVGSAGV+RRQAVD+SP RRVNQAIYLITTGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR Sbjct: 5 SEIKLFGKWTYDDVEINDISLEDYIGVKSKHAVYVPHTAGRYAQKRFRKAQCPIVERLVNALMMHGRNNGKKLMAVRIVKHTMDIIHLLSDQNPIQVIVDAIINAGPREDATRVGSAGVIRRQAVDISPLRRVNQAIYLITTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKANR 194
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|971507041|dbj|GAQ91161.1| (40S ribosomal protein S5 [Klebsormidium nitens]) HSP 1 Score: 328.176 bits (840), Expect = 2.264e-112 Identity = 152/189 (80.42%), Postives = 173/189 (91.53%), Query Frame = 0 Query: 27 DIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 ++KLFG+WS DV + D+SLEDYI V K AT++PHTAGRYQ KRFRKAQCP+VERL NSLM GRN+GKKL A RIVKH++EIIHLLTDQNP+QVVVD+IIN+GPRED+TR+GSAGVVRRQAVD+SP RRVNQAIYL+TTGARES+FRNIKTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR Sbjct: 7 EVKLFGQWSFEDVAVSDISLEDYIAVKPKFATFVPHTAGRYQNKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHSMEIIHLLTDQNPIQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 195
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|255075807|ref|XP_002501578.1| (predicted protein [Micromonas commoda] >gi|226516842|gb|ACO62836.1| predicted protein [Micromonas commoda]) HSP 1 Score: 328.176 bits (840), Expect = 2.978e-112 Identity = 156/199 (78.39%), Postives = 177/199 (88.94%), Query Frame = 0 Query: 17 MAVAFEDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 MAVA A+IKLFGKWS DVEI D+SLEDYIGV K A Y+PHTAGRY +KRFRKAQCP+ ERL N+LM GRN+GKKL A RIVKH ++IIHLL+DQNP+QV+VD+IINAGPRED+TRVGSAGV+RRQAVD+SP RRVNQAIYLITTGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDE+ERVAKANR Sbjct: 1 MAVA----PAEIKLFGKWSYEDVEINDISLEDYIGVKSKHAVYVPHTAGRYAQKRFRKAQCPITERLVNALMMHGRNNGKKLMAVRIVKHAMDIIHLLSDQNPIQVIVDAIINAGPREDATRVGSAGVIRRQAVDISPLRRVNQAIYLITTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKANR 195
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|397572180|gb|EJK48143.1| (hypothetical protein THAOC_33085 [Thalassiosira oceanica]) HSP 1 Score: 327.791 bits (839), Expect = 9.664e-112 Identity = 152/192 (79.17%), Postives = 174/192 (90.62%), Query Frame = 0 Query: 24 NSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 + ++KLFGKWS D+EI+D+SL DYI V G ATYLPHTAGRYQKKRFRKA CP+VERLA LMRKGRNSGKKL A RIV+HTLEIIHLLTDQNPVQVVVD+IIN+GPREDSTRVG AGVVRRQAVDMSPFRRVN A+YL+ TGARE+SFRN+KT+AE LA+E++NAA+GSSNSYAIKKKDE+ERV+K+NR Sbjct: 33 GATEVKLFGKWSFDDIEIRDISLVDYIAVKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 224
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|302830135|ref|XP_002946634.1| (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >gi|300268380|gb|EFJ52561.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis]) HSP 1 Score: 326.635 bits (836), Expect = 1.012e-111 Identity = 150/191 (78.53%), Postives = 173/191 (90.58%), Query Frame = 0 Query: 25 SADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 + D+KLFGKWS D+E++D+SLEDYI V K A Y+PHTAGRYQKKRFRKA CP+VERL NSLM GRN+GKKL A RIVKH +IIHLLTDQNP+QV+VD+IIN+GPRED+TR+GSAGVVRRQAVD+SP RRVNQAIYL+TTGARE++FRNIKTIAE LADE++NAAKGSSNSYAIKKKDE+ERVAKANR Sbjct: 3 TPDVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
BLAST of EWM28318.1 vs. NCBI_GenBank
Match: gi|673051697|ref|XP_008879809.1| (40S ribosomal protein [Aphanomyces invadans] >gi|698791798|ref|XP_009828931.1| 40S ribosomal protein [Aphanomyces astaci] >gi|574115588|gb|ETV81073.1| 40S ribosomal protein [Aphanomyces astaci] >gi|574464494|gb|ETV91541.1| 40S ribosomal protein [Aphanomyces invadans]) HSP 1 Score: 326.635 bits (836), Expect = 1.280e-111 Identity = 149/191 (78.01%), Postives = 175/191 (91.62%), Query Frame = 0 Query: 25 SADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215 +A++KLF KW+ D+++ D++L DY+ V GK AT+LPHTA RYQKKRFRKA CP+VERL NSLMR GRNSGKKL A RI++HTLEIIHLLTDQNP+QV+VD++INAGPREDSTRVGSAGVVRRQ VD+SPFRRVNQA+YL++TGARE++FRN+KTIAE LADE+INAAKGSSNSYAIKKKDEVERVAKANR Sbjct: 5 AAEVKLFNKWTYDDIKVNDVALIDYVAVTGKAATFLPHTAQRYQKKRFRKALCPIVERLGNSLMRHGRNSGKKLMATRILRHTLEIIHLLTDQNPLQVLVDAVINAGPREDSTRVGSAGVVRRQGVDVSPFRRVNQALYLLSTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEVERVAKANR 195 The following BLAST results are available for this feature:
BLAST of EWM28318.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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