EWM28315.1, cds2357 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28315.1
Unique Name	cds2357
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:205839..206009 -
Alignment location	CM002459.1:205659..205795 -
Alignment location	CM002459.1:205442..205558 -
Alignment location	CM002459.1:205241..205394 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28315.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100348g4.2074.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:205839..206009 -
CM002459.1	supercontig	CM002459.1:205659..205795 -
CM002459.1	supercontig	CM002459.1:205442..205558 -
CM002459.1	supercontig	CM002459.1:205241..205394 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM28315.1 vs. NCBI_GenBank
Match: gi|585110663|gb|EWM28315.1| (hypothetical protein Naga_100348g4 [Nannochloropsis gaditana])

HSP 1 Score: 399.823 bits (1026), Expect = 4.397e-141
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0

Query:    1 MWSREKGRSAGARKGSSITVEAGYHHRDREMTRHFTPVWVIKEGVGYNHIGDQYRWKEGGIAQGTQSNKGERENRSPYRLYPLGFRGVTASHQGAEKRQRGGGYTGAIVVMLASCLSRGLPLNNCADKRSVPVSFSEIFCPSKKDGRSTCRVRRGARQGVKNINPWTMDEHSFPSVIFFLFPQSTSASRSAP 192
            MWSREKGRSAGARKGSSITVEAGYHHRDREMTRHFTPVWVIKEGVGYNHIGDQYRWKEGGIAQGTQSNKGERENRSPYRLYPLGFRGVTASHQGAEKRQRGGGYTGAIVVMLASCLSRGLPLNNCADKRSVPVSFSEIFCPSKKDGRSTCRVRRGARQGVKNINPWTMDEHSFPSVIFFLFPQSTSASRSAP
Sbjct:    1 MWSREKGRSAGARKGSSITVEAGYHHRDREMTRHFTPVWVIKEGVGYNHIGDQYRWKEGGIAQGTQSNKGERENRSPYRLYPLGFRGVTASHQGAEKRQRGGGYTGAIVVMLASCLSRGLPLNNCADKRSVPVSFSEIFCPSKKDGRSTCRVRRGARQGVKNINPWTMDEHSFPSVIFFLFPQSTSASRSAP 192

The following BLAST results are available for this feature:

BLAST of EWM28315.1 vs. NCBI_GenBank

BLAST of EWM28315.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110663\|gb\|EWM28315.1\|	4.397e-141	100.00	hypothetical protein Naga_100348g4 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2365	rna2365	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications