EWM28336.1, cds2343 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|585110685|gb|EWM28336.1| (hypothetical protein Naga_100109g12 [Nannochloropsis gaditana]) HSP 1 Score: 1031.55 bits (2666), Expect = 0.000e+0 Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0
Query: 1 MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES 509
MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES
Sbjct: 1 MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES 509
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|299473516|emb|CBN77912.1| (ATP binding protein, putative [Ectocarpus siliculosus]) HSP 1 Score: 105.531 bits (262), Expect = 1.125e-20 Identity = 121/455 (26.59%), Postives = 189/455 (41.54%), Query Frame = 0
Query: 69 LPCRPISRRRPRRPLALSANDYDEN----------RRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYD-WTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCS--------------YALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQ--EGGVYG 496
L R S R PR P A ++ ++ RR + E ++L++ R IGE + E N+++ P+ R + + G RLFEA T +VLKEFLP +A E+E+ L D W ++N P P P++ L G L + F++ W +F PSLP P G+VW+ R L S P A ++E F +P R ++K + G+ A++ +H++GVVH ++ S++ V+T D R + +EV LS+ GFAT + +D E + + G + Y+L VFL L+ G D K + + L+ + E+ FKGD + E ++ AV LDA G+GW L + A A + G YG
Sbjct: 28 LTLRSSSLRSPRPPGAAASRAAEQQQHVVQPNSGRRRPATSMSLLRTFEASELQLQRFIGELGFVEITDWEY--------------NRQTSPVDPSTPSRTLNSSGTTVRLFEA-RTYGNAKVVLKEFLPKGLKLAYREIEINDRLQDAWDQKNGPGGRP---PVLALMGSLVADESFKSRRFLEQWVSKF-PSLPVPAIGSVWLVYRWEGLYTFASFPP-AKQESEFFDAFNPTSRT----------KRRATFVKEMMRGAANALAFMHESGVVHRSLGASSLRVNTLDERYPRQ---LEVLLSDFGFATRL---SEIDDETIRRASSAGATSPLAVSDFLFREDLYSLGYVFLELVF------GAFCDDKSK----------RPDQNSLKRLLEDIFKGDFK-AFKDYCLTEPVWEPAVEVLDADRGSGWGLATALLQARGTAASYFDSGGYG 429
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|873225712|emb|CEM23152.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 83.5741 bits (205), Expect = 2.062e-13 Identity = 94/372 (25.27%), Postives = 153/372 (41.13%), Query Frame = 0
Query: 153 PAQIRREMRNMGVGARLFEAVDTRTG---QALVLKEFLPMMKNVAMGEVELY-RYLYDWT-RRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFG-PSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKR-------------------DWKGCSYALLEVFLRLLAEE---EEGEGEGGDGLGKYEEGFTLP--FAQVEAGGLQAV---TEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQE 491
P R+ RLF+A TG ++LKE+ +++A E+++Y + D+ R+ S P+VP G + P + F + W+ + ++PPP PGN+W ++ L + RL G+ + G + G + +LK ++ A+ LHQ +VH ++SP + ++ A+ RE ++V + + GFAT + D + V+R D K L + L +E + G+G+GG G T P F Q AV EE F GD+S GLR N+ + V LD AGW L + A +L Q+
Sbjct: 104 PRSPRQTTDESSAMVRLFQARLIPTGLPGYPVLLKEYATDARHLAETELDIYGEIIEDYNARKGLSEKAVSFPPVVPGLGRVEADPYLGTNEFQEQWKRQVAFRNVPPPRPGNIWTVLQWPGPLTFDTYDRLGRGERDDV---------LDGVVPGFRLKRKSRFLKMAIRRALEAIDYLHQLRIVHRSISPGSFVLQDANERE---PLNVKVLIQDFGFATTLQRLARSDDDDSVRRAMKVGAVTPAAILDYLKAEDLKSSCVTFLYFIVANLYDEAAAKRGQGKGGSDTGNKRMELT-PGGFRQTSPRSFLAVRRLVEEVFDGDMS-GLRDYWLNDEPFADVVKFLDQNDMAGWDFLSRLYKAPQLFQQQ 461
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|546306408|ref|XP_005712960.1| (unnamed protein product [Chondrus crispus] >gi|507109333|emb|CDF33157.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 70.0922 bits (170), Expect = 3.244e-9 Identity = 101/392 (25.77%), Postives = 154/392 (39.29%), Query Frame = 0
Query: 106 LEPNQLRIVRPIGEQ---RLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPD-----RVAYLKNVFEGSITAVSLLHQA-GVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAY-------QQAVACLDAKGGAGWVLLHDM 481
P+ I R +G+Q +T E +D P +RT QP+Q + + AR+ + ++LKEFL + + E E Y+ LY T + P +P+ L G T P F +W RF S PP G ++ R + T + A DA A PG + L K P R +L+ + ++ A+ LH G+VH ++ ++I+V+TA+ R + V + +LGFA V + D GL K G + E D + Y G+ + G + VT++RFK V+N R Y +AV+ LD GAGW LL M
Sbjct: 50 FAPSDFEIRRIVGQQAFANITDWEYYGVKDPLAP-----------TRTVQPSQPAIRLYD----ARITSNFPRLSNARVMLKEFLKDGVELGVNEAEAYQALYQATAGSVD---PDVVPVATLLGTFMTDESFSSPDFAASWARRFPNSPNPPTAGAPFLVFRWEGM--QTGLNCAAAKDAG----ADPGTS-----LLDKWFPSNLMQRRSIFLRVFMKRTLDALYYLHSTGGIVHRSMGLASIMVNTAEYRLA---SSLLVKIRDLGFAKPVSALAVGD--GLEKARKAGA-----------VTPGEIASFYNADDI--YALGYAFLEVIFSSYGGKPVTQDRFKVLFEDTFELDVSNFRQYCAEDPEWTEAVSLLDKDDGAGWDLLKTM 394
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|1072231845|gb|OEU16577.1| (hypothetical protein FRACYDRAFT_185239 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-8 Identity = 70/280 (25.00%), Postives = 122/280 (43.57%), Query Frame = 0
Query: 252 LPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGG----PDRVAY-LKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREG-------GREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRL----LAEEEEGEGEGGD-----GLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQ-EGGVYGVGPR-LLASSFWE 508
+PPP +VWV A L + S +A EK A+P ++GR +R + +K + + S++A++ +H+ G+VH ++ ++ ++S+ + R G+ V LS+ GFA +L D E + + G S+ + L + +AE+ G L E P + +Q + E FK D R V E +++ V LD K GAGW +L + A VA+ E + + R LL++ F++
Sbjct: 276 VPPPKTNSVWVVYEYAGLNTIASYTSMA---PEKKRAATPPKKNFFGRFVQPPALPPFRERANFVIKGIMKESLSALATIHEEGIVHRSIGRNSFVISSPTQNKAEASSIYFTRVSGLVVKLSDFGFA-GLLEDSANDQEFISRARSFGLSFRTGDTSLTMTNFAMAEDLHALGFVFLGLLLVSLADLPENANAPMPNTDEDTIQKLLNEIFKLDFQ-AFREYVEAEEVWEKLVLLLDEKDGAGWTVLETLFKARETVAEKENSLKVITARGLLSNPFFQ 550 The following BLAST results are available for this feature:
BLAST of EWM28336.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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