EWM28336.1, cds2343 (CDS) Nannochloropsis gaditana

Overview
NameEWM28336.1
Unique Namecds2343
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:173096..173159 +
Alignment locationCM002459.1:173234..173372 +
Alignment locationCM002459.1:173782..174183 +
Alignment locationCM002459.1:174368..175292 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28336.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100109g12.6604.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:173096..173159 +
CM002459.1supercontigCM002459.1:173234..173372 +
CM002459.1supercontigCM002459.1:173782..174183 +
CM002459.1supercontigCM002459.1:174368..175292 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
Homology
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|585110685|gb|EWM28336.1| (hypothetical protein Naga_100109g12 [Nannochloropsis gaditana])

HSP 1 Score: 1031.55 bits (2666), Expect = 0.000e+0
Identity = 509/509 (100.00%), Postives = 509/509 (100.00%), Query Frame = 0
Query:    1 MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES 509
            MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES
Sbjct:    1 MKADERKDSCTRRIMLQIDVFAIWAQRYPRLKTQVTSLPTLRGQWRDTWELNRHIAQEGCSKVYQISKLPCRPISRRRPRRPLALSANDYDENRRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQEGGVYGVGPRLLASSFWES 509          
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|299473516|emb|CBN77912.1| (ATP binding protein, putative [Ectocarpus siliculosus])

HSP 1 Score: 105.531 bits (262), Expect = 1.125e-20
Identity = 121/455 (26.59%), Postives = 189/455 (41.54%), Query Frame = 0
Query:   69 LPCRPISRRRPRRPLALSANDYDEN----------RRKTDDPFTIPVLEPNQLRIVRPIGEQRLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYD-WTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCS--------------YALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQ--EGGVYG 496
            L  R  S R PR P A ++   ++           RR       +   E ++L++ R IGE       + E               N+++    P+   R + + G   RLFEA  T     +VLKEFLP    +A  E+E+   L D W ++N P   P   P++ L G L      +   F++ W  +F PSLP P  G+VW+  R   L    S P  A  ++E F   +P                R  ++K +  G+  A++ +H++GVVH ++  S++ V+T D R   +   +EV LS+ GFAT +     +D E + +    G +              Y+L  VFL L+       G   D   K          + +   L+ + E+ FKGD     +     E  ++ AV  LDA  G+GW L   +  A    A   + G YG
Sbjct:   28 LTLRSSSLRSPRPPGAAASRAAEQQQHVVQPNSGRRRPATSMSLLRTFEASELQLQRFIGELGFVEITDWEY--------------NRQTSPVDPSTPSRTLNSSGTTVRLFEA-RTYGNAKVVLKEFLPKGLKLAYREIEINDRLQDAWDQKNGPGGRP---PVLALMGSLVADESFKSRRFLEQWVSKF-PSLPVPAIGSVWLVYRWEGLYTFASFPP-AKQESEFFDAFNPTSRT----------KRRATFVKEMMRGAANALAFMHESGVVHRSLGASSLRVNTLDERYPRQ---LEVLLSDFGFATRL---SEIDDETIRRASSAGATSPLAVSDFLFREDLYSLGYVFLELVF------GAFCDDKSK----------RPDQNSLKRLLEDIFKGDFK-AFKDYCLTEPVWEPAVEVLDADRGSGWGLATALLQARGTAASYFDSGGYG 429          
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|873225712|emb|CEM23152.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 83.5741 bits (205), Expect = 2.062e-13
Identity = 94/372 (25.27%), Postives = 153/372 (41.13%), Query Frame = 0
Query:  153 PAQIRREMRNMGVGARLFEAVDTRTG---QALVLKEFLPMMKNVAMGEVELY-RYLYDWT-RRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFG-PSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPDRVAYLKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKR-------------------DWKGCSYALLEVFLRLLAEE---EEGEGEGGDGLGKYEEGFTLP--FAQVEAGGLQAV---TEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQE 491
            P   R+         RLF+A    TG     ++LKE+    +++A  E+++Y   + D+  R+       S  P+VP  G +   P +    F + W+ +    ++PPP PGN+W  ++    L   +  RL  G+ +             G + G     +  +LK     ++ A+  LHQ  +VH ++SP + ++  A+ RE      ++V + + GFAT +      D +  V+R                   D K      L   +  L +E   + G+G+GG   G      T P  F Q       AV    EE F GD+S GLR    N+  +   V  LD    AGW  L  +  A +L  Q+
Sbjct:  104 PRSPRQTTDESSAMVRLFQARLIPTGLPGYPVLLKEYATDARHLAETELDIYGEIIEDYNARKGLSEKAVSFPPVVPGLGRVEADPYLGTNEFQEQWKRQVAFRNVPPPRPGNIWTVLQWPGPLTFDTYDRLGRGERDDV---------LDGVVPGFRLKRKSRFLKMAIRRALEAIDYLHQLRIVHRSISPGSFVLQDANERE---PLNVKVLIQDFGFATTLQRLARSDDDDSVRRAMKVGAVTPAAILDYLKAEDLKSSCVTFLYFIVANLYDEAAAKRGQGKGGSDTGNKRMELT-PGGFRQTSPRSFLAVRRLVEEVFDGDMS-GLRDYWLNDEPFADVVKFLDQNDMAGWDFLSRLYKAPQLFQQQ 461          
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|546306408|ref|XP_005712960.1| (unnamed protein product [Chondrus crispus] >gi|507109333|emb|CDF33157.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 70.0922 bits (170), Expect = 3.244e-9
Identity = 101/392 (25.77%), Postives = 154/392 (39.29%), Query Frame = 0
Query:  106 LEPNQLRIVRPIGEQ---RLTVEEETETRDGAGPRGAFGRIRNKKSRTEQPAQIRREMRNMGVGARLFEAVDTRTGQALVLKEFLPMMKNVAMGEVELYRYLYDWTRRNQPAWLPSDLPLVPLHGYLTTGPEVEDPSFVQAWRDRFGPSLPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGGPD-----RVAYLKNVFEGSITAVSLLHQA-GVVHGAVSPSTILVSTADLREGGREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRLLAEEEEGEGEGGDGLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAY-------QQAVACLDAKGGAGWVLLHDM 481
              P+   I R +G+Q    +T  E    +D   P           +RT QP+Q    + +    AR+       +   ++LKEFL     + + E E Y+ LY  T  +     P  +P+  L G   T      P F  +W  RF  S  PP  G  ++  R   +   T +   A  DA     A PG +     L  K  P      R  +L+   + ++ A+  LH   G+VH ++  ++I+V+TA+ R       + V + +LGFA  V +    D  GL K    G            +   E       D +  Y  G+        + G + VT++RFK          V+N R Y        +AV+ LD   GAGW LL  M
Sbjct:   50 FAPSDFEIRRIVGQQAFANITDWEYYGVKDPLAP-----------TRTVQPSQPAIRLYD----ARITSNFPRLSNARVMLKEFLKDGVELGVNEAEAYQALYQATAGSVD---PDVVPVATLLGTFMTDESFSSPDFAASWARRFPNSPNPPTAGAPFLVFRWEGM--QTGLNCAAAKDAG----ADPGTS-----LLDKWFPSNLMQRRSIFLRVFMKRTLDALYYLHSTGGIVHRSMGLASIMVNTAEYRLA---SSLLVKIRDLGFAKPVSALAVGD--GLEKARKAGA-----------VTPGEIASFYNADDI--YALGYAFLEVIFSSYGGKPVTQDRFKVLFEDTFELDVSNFRQYCAEDPEWTEAVSLLDKDDGAGWDLLKTM 394          
BLAST of EWM28336.1 vs. NCBI_GenBank
Match: gi|1072231845|gb|OEU16577.1| (hypothetical protein FRACYDRAFT_185239 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 68.5514 bits (166), Expect = 1.333e-8
Identity = 70/280 (25.00%), Postives = 122/280 (43.57%), Query Frame = 0
Query:  252 LPPPVPGNVWVAVRAARLLPLTSVPRLALGDAEKFPLASPGGAGWWGRLWGKGG----PDRVAY-LKNVFEGSITAVSLLHQAGVVHGAVSPSTILVSTADLREG-------GREGGMEVWLSELGFATNVLSQGTLDFEGLVKRDWKGCSYALLEVFLRL----LAEEEEGEGEGGD-----GLGKYEEGFTLPFAQVEAGGLQAVTEERFKGDVSVGLRSLVNNERAYQQAVACLDAKGGAGWVLLHDMANAGRLVAQ-EGGVYGVGPR-LLASSFWE 508
            +PPP   +VWV    A L  + S   +A    EK   A+P    ++GR           +R  + +K + + S++A++ +H+ G+VH ++  ++ ++S+    +         R  G+ V LS+ GFA  +L     D E + +    G S+   +  L +    +AE+    G          L    E    P    +   +Q +  E FK D     R  V  E  +++ V  LD K GAGW +L  +  A   VA+ E  +  +  R LL++ F++
Sbjct:  276 VPPPKTNSVWVVYEYAGLNTIASYTSMA---PEKKRAATPPKKNFFGRFVQPPALPPFRERANFVIKGIMKESLSALATIHEEGIVHRSIGRNSFVISSPTQNKAEASSIYFTRVSGLVVKLSDFGFA-GLLEDSANDQEFISRARSFGLSFRTGDTSLTMTNFAMAEDLHALGFVFLGLLLVSLADLPENANAPMPNTDEDTIQKLLNEIFKLDFQ-AFREYVEAEEVWEKLVLLLDEKDGAGWTVLETLFKARETVAEKENSLKVITARGLLSNPFFQ 550          
The following BLAST results are available for this feature:
BLAST of EWM28336.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585110685|gb|EWM28336.1|0.000e+0100.00hypothetical protein Naga_100109g12 [Nannochlorops... [more]
gi|299473516|emb|CBN77912.1|1.125e-2026.59ATP binding protein, putative [Ectocarpus siliculo... [more]
gi|873225712|emb|CEM23152.1|2.062e-1325.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|546306408|ref|XP_005712960.1|3.244e-925.77unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1072231845|gb|OEU16577.1|1.333e-825.00hypothetical protein FRACYDRAFT_185239 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2351rna2351Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications