EWM28345.1, cds2327 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|585110699|gb|EWM28345.1| (uncharacterized protein Naga_100846g4 [Nannochloropsis gaditana]) HSP 1 Score: 498.434 bits (1282), Expect = 2.072e-178 Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0 Query: 1 MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR 243 MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR Sbjct: 1 MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR 243
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|299470828|emb|CBN78651.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 114.775 bits (286), Expect = 1.661e-28 Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0 Query: 157 APTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239 A + A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP G G D PQWPPPGW AG Sbjct: 70 AAVNKVGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 152
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|223994315|ref|XP_002286841.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978156|gb|EED96482.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 105.916 bits (263), Expect = 4.701e-26 Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 0 Query: 163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239 S+ +IN YK++ISPLLP ACRF PTCS+Y ++++++FGP+KG +LTAWRL RC+P GGRG+DPP+WPP + G Sbjct: 2 SSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYG 78
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1072236069|gb|OEU20797.1| (DUF37-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 106.686 bits (265), Expect = 1.094e-25 Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0 Query: 160 DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPP 233 D SSA +I YK +ISPLLP ACRF PTCS+Y +++++++G KG VLT+WRLLRC+P GG+G+DPP+WPP Sbjct: 48 DVSSAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002871421|ref|XP_015697508.1| (PREDICTED: uncharacterized protein LOC102703627 isoform X3 [Oryza brachyantha]) HSP 1 Score: 106.686 bits (265), Expect = 3.917e-25 Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0 Query: 150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231 +EVEEV +D + ++ + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W Sbjct: 90 EEVEEV---SDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 168
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|218190446|gb|EEC72873.1| (hypothetical protein OsI_06645 [Oryza sativa Indica Group]) HSP 1 Score: 105.145 bits (261), Expect = 4.027e-25 Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0 Query: 150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231 DE EEV D + ++ + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W Sbjct: 43 DEEEEV---NDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 121
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002238967|ref|XP_015623712.1| (PREDICTED: UPF0161 protein At3g09310 isoform X1 [Oryza sativa Japonica Group] >gi|47497897|dbj|BAD20081.1| unknown protein [Oryza sativa Japonica Group] >gi|47497921|dbj|BAD20127.1| unknown protein [Oryza sativa Japonica Group]) HSP 1 Score: 105.145 bits (261), Expect = 4.071e-25 Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0 Query: 150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231 DE EEV D + ++ + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W Sbjct: 43 DEEEEV---NDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 121
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|219110101|ref|XP_002176802.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411337|gb|EEC51265.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 103.219 bits (256), Expect = 6.603e-25 Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 0 Query: 163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPP 233 S +I YK+ ISPLLP ACRF PTCS+Y ++++Q++G KGA+LTAWRLLRC+P+GG+G+DPP+WPP Sbjct: 2 STAMIASIGFYKQVISPLLPPACRFVPTCSQYGVQAIQQYGSGKGAILTAWRLLRCSPIGGKGYDPPKWPP 72
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002871412|ref|XP_015697503.1| (PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >gi|1002871415|ref|XP_015697505.1| PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >gi|1002871417|ref|XP_015697506.1| PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha]) HSP 1 Score: 105.916 bits (263), Expect = 7.530e-25 Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0 Query: 150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231 +EVEEV +D + ++ + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W Sbjct: 93 EEVEEV---SDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 171
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1149830234|ref|XP_020172194.1| (UPF0161 protein At3g09310 isoform X1 [Aegilops tauschii subsp. tauschii] >gi|1149830238|ref|XP_020172195.1| UPF0161 protein At3g09310 isoform X1 [Aegilops tauschii subsp. tauschii]) HSP 1 Score: 103.605 bits (257), Expect = 1.649e-24 Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 0 Query: 150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231 D+ EEV D + ++ + YKR ISPLLP +CR+ PTCSEY++++ +++G AKG +LTAWRL RCNPLGG+G+DPP+W Sbjct: 41 DDEEEV---NDLGVKVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKRYGVAKGTILTAWRLCRCNPLGGQGYDPPRW 119 The following BLAST results are available for this feature:
BLAST of EWM28345.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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