EWM28345.1, cds2327 (CDS) Nannochloropsis gaditana

Overview
NameEWM28345.1
Unique Namecds2327
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:134228..134959 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28345.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100846g4.7643.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:134228..134959 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002696Membr_insert_effic_factor
Homology
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|585110699|gb|EWM28345.1| (uncharacterized protein Naga_100846g4 [Nannochloropsis gaditana])

HSP 1 Score: 498.434 bits (1282), Expect = 2.072e-178
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 0
Query:    1 MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR 243
            MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR
Sbjct:    1 MLVSSTHASPSPCAHSQGHFAGRRPRTSILCHLFISFFLVLLPFMVQGFLQVPHQPSMAQAGPPHPLGPSRALSPAFCQACFHEHNHKDGGRKTRRPGMPVLHFRGSCGCNAALQPVLNALGPYFPHTDEDTPDREGSLDVPEAVDESFDEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAGGTGR 243          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|299470828|emb|CBN78651.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.775 bits (286), Expect = 1.661e-28
Identity = 50/83 (60.24%), Postives = 63/83 (75.90%), Query Frame = 0
Query:  157 APTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
            A  +   A +I+F + YK+ +SPL+P ACRF PTCS Y +++++KFGP KGAVLTAWRL+RCNP  G G D PQWPPPGW AG
Sbjct:   70 AAVNKVGAAMISFIKAYKKELSPLIPPACRFLPTCSVYGVQAIEKFGPTKGAVLTAWRLMRCNPFAGYGVDYPQWPPPGWFAG 152          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|223994315|ref|XP_002286841.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978156|gb|EED96482.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 105.916 bits (263), Expect = 4.701e-26
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 0
Query:  163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPPPGWKAG 239
            S+ +IN    YK++ISPLLP ACRF PTCS+Y ++++++FGP+KG +LTAWRL RC+P GGRG+DPP+WPP  +  G
Sbjct:    2 SSSMINAIGFYKQWISPLLPPACRFLPTCSQYGVQAIEEFGPSKGVLLTAWRLARCSPFGGRGYDPPKWPPVAYNYG 78          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1072236069|gb|OEU20797.1| (DUF37-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 106.686 bits (265), Expect = 1.094e-25
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 0
Query:  160 DASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPP 233
            D SSA +I     YK +ISPLLP ACRF PTCS+Y +++++++G  KG VLT+WRLLRC+P GG+G+DPP+WPP
Sbjct:   48 DVSSAAMIATIGIYKNFISPLLPPACRFVPTCSQYGVQAIKEYGSTKGVVLTSWRLLRCSPFGGKGYDPPKWPP 121          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002871421|ref|XP_015697508.1| (PREDICTED: uncharacterized protein LOC102703627 isoform X3 [Oryza brachyantha])

HSP 1 Score: 106.686 bits (265), Expect = 3.917e-25
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0
Query:  150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231
            +EVEEV   +D    + ++  + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W
Sbjct:   90 EEVEEV---SDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 168          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|218190446|gb|EEC72873.1| (hypothetical protein OsI_06645 [Oryza sativa Indica Group])

HSP 1 Score: 105.145 bits (261), Expect = 4.027e-25
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0
Query:  150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231
            DE EEV    D    + ++  + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W
Sbjct:   43 DEEEEV---NDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 121          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002238967|ref|XP_015623712.1| (PREDICTED: UPF0161 protein At3g09310 isoform X1 [Oryza sativa Japonica Group] >gi|47497897|dbj|BAD20081.1| unknown protein [Oryza sativa Japonica Group] >gi|47497921|dbj|BAD20127.1| unknown protein [Oryza sativa Japonica Group])

HSP 1 Score: 105.145 bits (261), Expect = 4.071e-25
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 0
Query:  150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231
            DE EEV    D    + ++  + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W
Sbjct:   43 DEEEEV---NDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 121          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|219110101|ref|XP_002176802.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411337|gb|EEC51265.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.219 bits (256), Expect = 6.603e-25
Identity = 43/71 (60.56%), Postives = 58/71 (81.69%), Query Frame = 0
Query:  163 SAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQWPP 233
            S  +I     YK+ ISPLLP ACRF PTCS+Y ++++Q++G  KGA+LTAWRLLRC+P+GG+G+DPP+WPP
Sbjct:    2 STAMIASIGFYKQVISPLLPPACRFVPTCSQYGVQAIQQYGSGKGAILTAWRLLRCSPIGGKGYDPPKWPP 72          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1002871412|ref|XP_015697503.1| (PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >gi|1002871415|ref|XP_015697505.1| PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha] >gi|1002871417|ref|XP_015697506.1| PREDICTED: uncharacterized protein LOC102703627 isoform X1 [Oryza brachyantha])

HSP 1 Score: 105.916 bits (263), Expect = 7.530e-25
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 0
Query:  150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231
            +EVEEV   +D    + ++  + YKR ISPLLP +CR+ PTCSEY++++ +K+G AKG +LTAWRL RCNPLGG G+DPP+W
Sbjct:   93 EEVEEV---SDLGVNVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGGHGYDPPRW 171          
BLAST of EWM28345.1 vs. NCBI_GenBank
Match: gi|1149830234|ref|XP_020172194.1| (UPF0161 protein At3g09310 isoform X1 [Aegilops tauschii subsp. tauschii] >gi|1149830238|ref|XP_020172195.1| UPF0161 protein At3g09310 isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 103.605 bits (257), Expect = 1.649e-24
Identity = 44/82 (53.66%), Postives = 62/82 (75.61%), Query Frame = 0
Query:  150 DEVEEVLAPTDASSAILINFFRGYKRYISPLLPQACRFFPTCSEYAIESVQKFGPAKGAVLTAWRLLRCNPLGGRGWDPPQW 231
            D+ EEV    D    + ++  + YKR ISPLLP +CR+ PTCSEY++++ +++G AKG +LTAWRL RCNPLGG+G+DPP+W
Sbjct:   41 DDEEEV---NDLGVKVALSMLKFYKREISPLLPSSCRYVPTCSEYSMQAYKRYGVAKGTILTAWRLCRCNPLGGQGYDPPRW 119          
The following BLAST results are available for this feature:
BLAST of EWM28345.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110699|gb|EWM28345.1|2.072e-178100.00uncharacterized protein Naga_100846g4 [Nannochloro... [more]
gi|299470828|emb|CBN78651.1|1.661e-2860.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|223994315|ref|XP_002286841.1|4.701e-2658.44predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072236069|gb|OEU20797.1|1.094e-2559.46DUF37-domain-containing protein [Fragilariopsis cy... [more]
gi|1002871421|ref|XP_015697508.1|3.917e-2556.10PREDICTED: uncharacterized protein LOC102703627 is... [more]
gi|218190446|gb|EEC72873.1|4.027e-2556.10hypothetical protein OsI_06645 [Oryza sativa Indic... [more]
gi|1002238967|ref|XP_015623712.1|4.071e-2556.10PREDICTED: UPF0161 protein At3g09310 isoform X1 [O... [more]
gi|219110101|ref|XP_002176802.1|6.603e-2560.56predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1002871412|ref|XP_015697503.1|7.530e-2556.10PREDICTED: uncharacterized protein LOC102703627 is... [more]
gi|1149830234|ref|XP_020172194.1|1.649e-2453.66UPF0161 protein At3g09310 isoform X1 [Aegilops tau... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2335rna2335Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications