EWM28349.1, cds2323 (CDS) Nannochloropsis gaditana

Overview
NameEWM28349.1
Unique Namecds2323
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:122891..123793 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28349.1
Productthreonine synthase
Orig transcript idgnl|cribi|Naga_100657g1.8950.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:122891..123793 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0006520cellular amino acid metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0030170pyridoxal phosphate binding
Vocabulary: INTERPRO
TermDefinition
IPR000634Ser/Thr_deHydtase_PyrdxlP-BS
IPR027457TSH2
IPR029144Thr_synth_N
IPR001926TrpB-like_PLP-dep
Homology
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|585110706|gb|EWM28349.1| (threonine synthase [Nannochloropsis gaditana])

HSP 1 Score: 609.757 bits (1571), Expect = 0.000e+0
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGWFRDPPSHDCQPVE 300
            MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGWFRDPPSHDCQPVE
Sbjct:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGWFRDPPSHDCQPVE 300          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|1129189602|gb|OLP95033.1| (Threonine synthase-like 2 [Symbiodinium microadriaticum])

HSP 1 Score: 152.525 bits (384), Expect = 4.995e-39
Identity = 97/285 (34.04%), Postives = 141/285 (49.47%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVA--MRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAY 283
            MRY STR          R  +F +A+  G+APDGG+++PE +P +S  VL +WR L +P L  +L+ LF  D          E+ +  L ++V  S+A+F+ PE+V       P +      A+ + S                   ++IAELFHGP+  FKDLG Q+L  LL H+  +  +R TFLV T+GDTGP+A  AV       ++++V +P G++S  Q  QM  T  GVG                       +VV  EG  DD+D+PI  L  D A+
Sbjct:    1 MRYRSTR--------GERGATFEQALSRGYAPDGGLYVPEELPKISLDVLRTWRKLDFPSLALELMKLFAGD----------ELTEAELAEVVRGSYANFSHPEIV-------PVVPLQRRGAADAES------------------QVFIAELFHGPTFCFKDLGQQLLVRLLAHFSKRRNQRRTFLVSTTGDTGPAAMRAVSDAACANLQIIVFFPDGQISELQRRQM-TTVSGVGA----------------------KVVTFEGGGDDMDLPIKKLSSDAAF 219          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|470468597|ref|XP_004341915.1| (threonine synthase [Acanthamoeba castellanii str. Neff] >gi|440798750|gb|ELR19815.1| threonine synthase [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 151.754 bits (382), Expect = 1.099e-38
Identity = 95/286 (33.22%), Postives = 142/286 (49.65%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESW--RGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYP-LGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAY 283
            M++ STR         S   +F EAVL G+APDGGM +P  IP + RG L  W  R LT+P+L  ++ ALF+D+          E+ +  LR ++ + F  F   E+V     P  +L+    T + S                       +AELFHGP+LAFKDLG+Q + ++ E+ + +  R+++ +V TSGDTG +A   V+G+  M + VL P  GR++  QE QM                        T+   NV  +AV+G+SDD DV +  +F DP +
Sbjct:    1 MKFKSTR-------GGSEVLTFEEAVLRGYAPDGGMIVPATIPCIERGTLRQWAARNLTFPQLCEEIFALFIDE---------EEMPRADLRALLQSCFGEFTDDEIV-----PIKHLAPRHATEAGSGF------------------EFDVAELFHGPTLAFKDLGLQFIGHMFEYLVRKRQRKLSIIVATSGDTGSAAIHCVKGRQNMNIFVLLPGQGRIAELQERQM-----------------------TTVLDKNVFSIAVDGTSDDADVAVKGVFADPEF 224          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|255089865|ref|XP_002506854.1| (predicted protein, partial [Micromonas commoda] >gi|226522127|gb|ACO68112.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 148.288 bits (373), Expect = 1.086e-37
Identity = 101/292 (34.59%), Postives = 142/292 (48.63%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGR-VSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSS---DDLDVPIASLFGDPAYR--CG 286
            MRY+STR          +  S  + +L G+APDGG+++PERIP V    L SW GLT+P+L  ++L+LF++  D         VD   LR+++D SFA+F  P+V                        PL+           + P + + ELFHGP+++FKD+ M  L +L +H+L +   R   LV T+GDTGP+AA A  G+  +   VLYP G  +S  QE QM                        T+  PNV  V V G +   DDLD  +A LF D + R  CG
Sbjct:    1 MRYVSTR--------GFKYASLEDVILNGFAPDGGLYVPERIPVVEPDTLRSWSGLTFPQLAFEVLSLFIEPSD---------VDPSDLRRLLDESFAAFDHPDVA-----------------------PLA-----------KTPDMLVLELFHGPTMSFKDVAMGFLISLTDHFLRRRNERRNVLVATTGDTGPAAAHAAIGRDRVHAWVLYPTGGFISDTQERQMT-----------------------TIDEPNVHAVGVGGCADGGDDLDAIVAKLFADESLREECG 218          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|754353296|ref|XP_004342475.2| (threonine synthase-like protein [Capsaspora owczarzaki ATCC 30864] >gi|765557970|gb|KJE98224.1| threonine synthase-like protein [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 145.976 bits (367), Expect = 2.315e-36
Identity = 100/280 (35.71%), Postives = 145/280 (51.79%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGD 280
            M ++STR   S+  P+S   SF   VL+G+A DGG+F+P+ IP ++   L +W+ L+Y  L  ++L LF+      +    A +    L  I+DA FA F  PE V    +P     ++ST  +                    P  + +AE++HGP+ AFKDL + +L  LLEHYL + G   T +VGTSGDTG +A  +V+G  ++ +VVL+P GR+S  Q  QM                         +  PNV V AV+GSSDDLDVPI ++  D
Sbjct:    1 MAFVSTR--ASAVRPASGLASFETTVLSGYASDGGLFMPQHIPTITASDLAAWQSLSYVGLAKQILPLFL-----TNPADQAALPVAALHDILDACFAKFDNPENV-LPVVPLMLPQNASTGGA--------------------PQQVLVAEMWHGPTGAFKDLALSLLGRLLEHYLSRTGEHRTIVVGTSGDTGSAAIDSVRGNTSVDIVVLFPEGRISRVQMLQM-----------------------ALVREPNVHVYAVDGSSDDLDVPIRNVLND 229          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|167527085|ref|XP_001747875.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163773624|gb|EDQ87262.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 145.206 bits (365), Expect = 5.182e-36
Identity = 91/255 (35.69%), Postives = 126/255 (49.41%), Query Frame = 0
Query:   30 WAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYR 284
            W   GGM +PE IP ++   L  W  L Y EL    L   +D  + ED           LR I+  S A FA P+V      P   L++     +S + L                   ++ EL+HGP+LAFKDLG+Q+L NLLEH+L +   R+  +VGTSGDTG +A  AV+G+  ++L VL+P GR+S  QE QM                      AG     NV V  ++G+SDDLD PI ++F D A++
Sbjct:   84 WQRCGGMLMPEAIPQLTADELRHWSTLGYGELCFAFLRKMIDPAELEDD---------ELRGIIAQSTAVFAHPDVT-----PVHTLNTDRVAGASCSQL-------------------HVCELWHGPTLAFKDLGLQILGNLLEHFLARRKDRLNVVVGTSGDTGSAAIEAVRGRDHLQLFVLFPHGRISHIQELQM---------------------TAGAESASNVHVWGMDGTSDDLDQPITAVFQDTAFK 284          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|1000783583|gb|KXN74716.1| (putative threonine synthase [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 141.354 bits (355), Expect = 9.588e-35
Identity = 89/292 (30.48%), Postives = 138/292 (47.26%), Query Frame = 0
Query:    1 MRYISTR-YDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGR-------RMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYR 284
            M+Y STR Y+PS+        +F + VL G APDGG+++PE+IP +    L+SW  L++ EL  KL   F++  +  D           L ++VD SF++F+  E+                             P     E ++  SLY  ELFHGP+ AFKD+ +Q L NL E +L ++ +       ++T +  TSGDTG +A   ++GK  + + +L+P GRVS  QEAQM                         +   NV  +++EG+ DD    +   FGD  ++
Sbjct:    1 MKYHSTRTYEPSN------LLNFEDTVLTGLAPDGGLYIPEQIPQLDEQTLKSWESLSFQELCKKLFRKFINPSEISDE---------ELSQLVDKSFSTFSHSEIT----------------------------PTVKLAETKDNKSLYCLELFHGPTYAFKDVALQFLGNLFEFFLTRKNQASQSNQHKVTVVGATSGDTGGAAIYGLRGKKNVEVFMLHPEGRVSRLQEAQM-----------------------TQVMDENVHNISIEGAFDDCQNLVKQCFGDAQFK 226          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|589612319|gb|EXI83722.1| (Threonine synthase [Candidatus Accumulibacter sp. BA-94])

HSP 1 Score: 140.198 bits (352), Expect = 1.760e-34
Identity = 96/287 (33.45%), Postives = 145/287 (50.52%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGW 287
            MRYISTR  P+ ++ SS+R +F E +L G APDGG++LPE  P V    L  WR L+Y +L   +LA F+DD   +D           LR ++  ++              P  Y +  + +A+S  + PL     P+   ++    L I EL +GP+LAFKD+ MQ+L NL E+ L + G  +  L  TSGDTG SA  A++GK  +R+ +L P  R+S FQ AQM                        +L  PN+  +A+ G+ DD    + ++  D A++  +
Sbjct:    1 MRYISTRARPTGTADSSKR-TFSEILLGGLAPDGGLYLPETYPRVGPSELAQWRRLSYADLACAVLARFIDDIPPDD-----------LRTLIHRTYT-------------PAIYRNGRNRSAASEIT-PLRWLEPPA--PERGEGGLAILELSNGPTLAFKDMAMQLLGNLFEYVLARNGEEINILGATSGDTGSSAEYAMRGKRGVRVFMLSPHERMSAFQRAQMY-----------------------SLQDPNIFNIAIRGTFDDAQDIVKAVSNDHAFKSHY 236          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|167526858|ref|XP_001747762.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163773866|gb|EDQ87502.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 142.124 bits (357), Expect = 3.163e-34
Identity = 93/290 (32.07%), Postives = 146/290 (50.34%), Query Frame = 0
Query:    3 YISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQ--EPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEG------RRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYR 284
            Y+STR  P+S+       SF EAV+AG APDGG+++P +IP V+   + +WR L++P+L  +++  F+         QN E+    L  +V  S+A+F    V        P +   +    S A + +    L + +  Q  E  S+Y+ E FHGP+ AFKD+ +Q + NL E++L +        + +T L  TSGDTG +A   ++GK  + +++L+P GRV+  QEAQM                        T+   NV  VAV+G+ DD    +   F DP +R
Sbjct:  341 YVSTRGGPASA------VSFEEAVMAGLAPDGGLYVPNQIPKVTEETMRAWRRLSFPKLAVEVMGKFIG--------QN-EIPAGTLEALVQRSYATFDSAHVT-------PLIEILTNKVVSLARVLIVSQSLRAAMLSQFSEDGSVYLLEQFHGPTCAFKDVALQFVGNLFEYFLSRRNAQSEKPKHITVLGATSGDTGSAAIFGLRGKANVDVIILHPEGRVAPIQEAQMT-----------------------TVLDDNVHNVAVKGTFDDCQAMVKECFNDPEFR 585          
BLAST of EWM28349.1 vs. NCBI_GenBank
Match: gi|502500440|ref|WP_012807312.1| (threonine synthase [Candidatus Accumulibacter phosphatis] >gi|257044677|gb|ACV33865.1| threonine synthase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1])

HSP 1 Score: 139.428 bits (350), Expect = 4.196e-34
Identity = 95/287 (33.10%), Postives = 141/287 (49.13%), Query Frame = 0
Query:    1 MRYISTRYDPSSSSPSSRRYSFREAVLAGWAPDGGMFLPERIPHVSRGVLESWRGLTYPELVTKLLALFMDDGDAEDATQNAEVDKVPLRKIVDASFASFAVPEVVRWKALPWPYLSSSSTTASSSASLPLSCHPLPSFLEKQEPPSLYIAELFHGPSLAFKDLGMQVLTNLLEHYLLQEGRRMTFLVGTSGDTGPSAAAAVQGKVAMRLVVLYPLGRVSTFQEAQMLATHGGVGGSGEKASGAAAEAKAGTLGTPNVRVVAVEGSSDDLDVPIASLFGDPAYRCGW 287
            MRYISTR +P S++ SS   +F + +L G APDGG++LP+  P VSR  L+ WRG+ Y +L   +L  F+DD   +D           L ++V  ++ + A                +   +A +S   PL     P     Q    L I EL +GP+LAFKD+ MQ+L NL E+ L ++G  +  L  TSGDTG SA  A++GK  +R+ +L P  R+S FQ AQM + H                         N+  +AV G  DD    + ++  D A++  +
Sbjct:    1 MRYISTRGNPPSTADSSGP-TFCQILLGGLAPDGGLYLPDHYPQVSRTELDQWRGMAYADLAHAVLTKFIDDIPLDD-----------LARLVARTYTAEA--------------YGNGRVSAQASDITPLRWLEPPD--PAQREAGLAILELSNGPTLAFKDMAMQLLGNLFEYVLARQGEEINILGATSGDTGSSAEYALRGKKGVRVFMLSPHERMSAFQRAQMYSLH-----------------------DENIHNIAVRGMFDDAQDIVKAVSNDHAFKARY 236          
The following BLAST results are available for this feature:
BLAST of EWM28349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110706|gb|EWM28349.1|0.000e+0100.00threonine synthase [Nannochloropsis gaditana][more]
gi|1129189602|gb|OLP95033.1|4.995e-3934.04Threonine synthase-like 2 [Symbiodinium microadria... [more]
gi|470468597|ref|XP_004341915.1|1.099e-3833.22threonine synthase [Acanthamoeba castellanii str. ... [more]
gi|255089865|ref|XP_002506854.1|1.086e-3734.59predicted protein, partial [Micromonas commoda] >g... [more]
gi|754353296|ref|XP_004342475.2|2.315e-3635.71threonine synthase-like protein [Capsaspora owczar... [more]
gi|167527085|ref|XP_001747875.1|5.182e-3635.69hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|1000783583|gb|KXN74716.1|9.588e-3530.48putative threonine synthase [Conidiobolus coronatu... [more]
gi|589612319|gb|EXI83722.1|1.760e-3433.45Threonine synthase [Candidatus Accumulibacter sp. ... [more]
gi|167526858|ref|XP_001747762.1|3.163e-3432.07hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|502500440|ref|WP_012807312.1|4.196e-3433.10threonine synthase [Candidatus Accumulibacter phos... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2331rna2331Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications