EWM28370.1, cds2303 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM28370.1
Unique Name	cds2303
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002459.1:86349..86600 -
Alignment location	CM002459.1:85115..86092 -
Alignment location	CM002459.1:84821..84958 -
Alignment location	CM002459.1:84202..84576 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM28370.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100329g2.5237.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:86349..86600 -
CM002459.1	supercontig	CM002459.1:85115..86092 -
CM002459.1	supercontig	CM002459.1:84821..84958 -
CM002459.1	supercontig	CM002459.1:84202..84576 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR029071	Ubiquitin-rel_dom

Homology

[Close]

BLAST of EWM28370.1 vs. NCBI_GenBank
Match: gi|585110738|gb|EWM28370.1| (hypothetical protein Naga_100329g2 [Nannochloropsis gaditana])

HSP 1 Score: 1153.66 bits (2983), Expect = 0.000e+0
Identity = 580/580 (100.00%), Postives = 580/580 (100.00%), Query Frame = 0

Query:    1 MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSINIPSGEGSLLSPPASLPASVPPSVDGGFVPAPGETREQEKAWLAQHQLQQLFFYQQQQYILSYQYHCALQQLHHWYAQQMVEGGRVGGAEDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 580
            MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSINIPSGEGSLLSPPASLPASVPPSVDGGFVPAPGETREQEKAWLAQHQLQQLFFYQQQQYILSYQYHCALQQLHHWYAQQMVEGGRVGGAEDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG
Sbjct:    1 MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSINIPSGEGSLLSPPASLPASVPPSVDGGFVPAPGETREQEKAWLAQHQLQQLFFYQQQQYILSYQYHCALQQLHHWYAQQMVEGGRVGGAEDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 580

[Close]

BLAST of EWM28370.1 vs. NCBI_GenBank
Match: gi|553182240|ref|XP_005853701.1| (hypothetical protein NGA_0444000, partial [Nannochloropsis gaditana CCMP526] >gi|422295357|gb|EKU22656.1| hypothetical protein NGA_0444000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 494.582 bits (1272), Expect = 2.670e-171
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0

Query:  334 EDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 580
            EDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG
Sbjct:    1 EDGERRFTGAPPPGTWNAFVEDHAERQHAQAAGVAPMPAGREHVGQAEQVAPPRPAGGPQALHAGPWYQEPRPQLLELGRAVLALCDWQLAAKMVMLVFLLNPGKPQRLATLCVVAALAYLYQTGILALLLGPAFRRPAGRGGREGGREGEEGAPADGPEQEAGAGGREGQREGGTGKDFWAITKEMCYTGALPGGEHRWWLEAFVLSASFFLSLFPTWIPHRMEEGVEGGREGELGALAGEAAVQG 247

[Close]

BLAST of EWM28370.1 vs. NCBI_GenBank
Match: gi|553182244|ref|XP_005853702.1| (hypothetical protein NGA_0444100, partial [Nannochloropsis gaditana CCMP526] >gi|422295358|gb|EKU22657.1| hypothetical protein NGA_0444100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 477.248 bits (1227), Expect = 1.483e-164
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 0

Query:    1 MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSIN 245
            MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSIN
Sbjct:    1 MSMTDSGESLVHVLVRHVYRSITLEFTLPLEGSTVHAVKKRVEAALEEKPAPHRQRLIYLGKVCVDETAPLVGILTGGTGNDHETLDLSTPKTFHLVVTGITSPVPSVPASVSTSVAPTSPALPAGTPGRTLREGGRAGEPVGSTSSSATPTVIFPRPTTSSPIPIHPGVTGGSGRGREGGGGHGGTGGGLSHGMIVEENGRSRREGGEREWEREAPSSAATSVPSSVERDVVDSPRAIRGGSIN 245

The following BLAST results are available for this feature:

BLAST of EWM28370.1 vs. NCBI_GenBank

BLAST of EWM28370.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|585110738\|gb\|EWM28370.1\|	0.000e+0	100.00	hypothetical protein Naga_100329g2 [Nannochloropsi...	[more]
gi\|553182240\|ref\|XP_005853701.1\|	2.670e-171	100.00	hypothetical protein NGA_0444000, partial [Nannoch...	[more]
gi\|553182244\|ref\|XP_005853702.1\|	1.483e-164	100.00	hypothetical protein NGA_0444100, partial [Nannoch...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2311	rna2311	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications