EWM28390.1, cds2288 (CDS) Nannochloropsis gaditana

Overview
NameEWM28390.1
Unique Namecds2288
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:58927..59227 -
Alignment locationCM002459.1:58360..58835 -
Alignment locationCM002459.1:58090..58196 -
Alignment locationCM002459.1:57282..57806 -
Alignment locationCM002459.1:56865..57153 -
Alignment locationCM002459.1:56608..56748 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28390.1
ProductSET domain protein
Orig transcript idgnl|cribi|Naga_100264g4.10409.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:58927..59227 -
CM002459.1supercontigCM002459.1:58360..58835 -
CM002459.1supercontigCM002459.1:58090..58196 -
CM002459.1supercontigCM002459.1:57282..57806 -
CM002459.1supercontigCM002459.1:56865..57153 -
CM002459.1supercontigCM002459.1:56608..56748 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM28390.1 vs. NCBI_GenBank
Match: gi|585110768|gb|EWM28390.1| (SET domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1258.43 bits (3255), Expect = 0.000e+0
Identity = 612/612 (100.00%), Postives = 612/612 (100.00%), Query Frame = 0 
Query:    1 MRISCLRSGFTWPYILLNALHVDLIGSTMSSVPCLLCVRRAPQYDRQSCNSGIGATSGSNAKNKRCDDQKSNSTHNWGLFLTDDVIEGQIVYRGSYQLVNASSFNFPSIIAVDGHFYPYSYDRHTTRLPSIAGSSKWCFFHPSRGALMNHSCRPSTVIKKVDNIEVEGTEKTRKSRKRRGKDDIGEAMDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSSDLCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFFFFPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSGRVLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQVLTQRHFRGQPCRGMGATQSYHPSAGAVGFRCECSGCARPGKAIYR 612
            MRISCLRSGFTWPYILLNALHVDLIGSTMSSVPCLLCVRRAPQYDRQSCNSGIGATSGSNAKNKRCDDQKSNSTHNWGLFLTDDVIEGQIVYRGSYQLVNASSFNFPSIIAVDGHFYPYSYDRHTTRLPSIAGSSKWCFFHPSRGALMNHSCRPSTVIKKVDNIEVEGTEKTRKSRKRRGKDDIGEAMDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSSDLCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFFFFPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSGRVLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQVLTQRHFRGQPCRGMGATQSYHPSAGAVGFRCECSGCARPGKAIYR
Sbjct:    1 MRISCLRSGFTWPYILLNALHVDLIGSTMSSVPCLLCVRRAPQYDRQSCNSGIGATSGSNAKNKRCDDQKSNSTHNWGLFLTDDVIEGQIVYRGSYQLVNASSFNFPSIIAVDGHFYPYSYDRHTTRLPSIAGSSKWCFFHPSRGALMNHSCRPSTVIKKVDNIEVEGTEKTRKSRKRRGKDDIGEAMDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSSDLCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFFFFPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSGRVLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQVLTQRHFRGQPCRGMGATQSYHPSAGAVGFRCECSGCARPGKAIYR 612
[Close]
BLAST of EWM28390.1 vs. NCBI_GenBank
Match: gi|553180594|ref|XP_005853428.1| (hypothetical protein NGA_0447800 [Nannochloropsis gaditana CCMP526] >gi|422295631|gb|EKU22930.1| hypothetical protein NGA_0447800 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 376/379 (99.21%), Postives = 377/379 (99.47%), Query Frame = 0 
Query:  188 MDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSSDLCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFFFFPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSGRVLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQ 566
            MDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSS LCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFF FPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSG+VLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQ
Sbjct:    1 MDGEFDEEEGSDREQDSFTYDVVAARSLRKGEEATCDYFLAEWEGEKVGNCPQPCLCSAGEGVCGGLRMGFKHLPFSEQILRLHAVADHVFEAFEEEKSSYLCVLDARDGLPPGICLSFKREEEEEEEKGKEEEEEKKRKGGKKKLPKETLYVKGAQGPRIIATRAFSAGETLYRASSSFFSFPPPRISPPFLPSSSPPSAVFDPRQPSSLAAVEPQIAPRRSTSPSPHSHPPPPALLLVLDDCTIPLSPYELYSTSTPAPPSFPPSLVASLGEERSRREVYGWDCLMRHHCRPSTLWIWETGDGGQGEGEGGREGKGGSKSGSGQVLHDNATRCLRLEHRTGRGRRGKIHSGVNIRRGYRVVATKEIGAGEELTVDYQ 379
The following BLAST results are available for this feature:
BLAST of EWM28390.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110768|gb|EWM28390.1|0.000e+0100.00SET domain protein [Nannochloropsis gaditana][more]
gi|553180594|ref|XP_005853428.1|0.000e+099.21hypothetical protein NGA_0447800 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2296rna2296Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications