EWM28404.1, cds2276 (CDS) Nannochloropsis gaditana

Overview
NameEWM28404.1
Unique Namecds2276
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002459.1:21698..21856 -
Alignment locationCM002459.1:21265..21419 -
Alignment locationCM002459.1:20925..21051 -
Alignment locationCM002459.1:20491..20620 -
Alignment locationCM002459.1:20218..20337 -
Alignment locationCM002459.1:19953..20042 -
Alignment locationCM002459.1:19721..19794 -
Alignment locationCM002459.1:18925..19037 -
Alignment locationCM002459.1:18619..18772 -
Alignment locationCM002459.1:18327..18404 -
Alignment locationCM002459.1:18023..18143 -
Alignment locationCM002459.1:17480..17641 -
Alignment locationCM002459.1:17217..17329 -
Alignment locationCM002459.1:17013..17114 -
Alignment locationCM002459.1:16614..16758 -
Alignment locationCM002459.1:16106..16269 -
Alignment locationCM002459.1:15811..15933 -
Alignment locationCM002459.1:15457..15627 -
Alignment locationCM002459.1:15238..15321 -
Alignment locationCM002459.1:14950..15099 -
Alignment locationCM002459.1:14605..14731 -
Alignment locationCM002459.1:14344..14532 -
Alignment locationCM002459.1:14107..14191 -
Alignment locationCM002459.1:13989..14061 -
Alignment locationCM002459.1:13818..13910 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28404.1
Productcd36-like class b scavenger receptor
Orig transcript idgnl|cribi|Naga_100206g2.1436.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:21698..21856 -
CM002459.1supercontigCM002459.1:21265..21419 -
CM002459.1supercontigCM002459.1:20925..21051 -
CM002459.1supercontigCM002459.1:20491..20620 -
CM002459.1supercontigCM002459.1:20218..20337 -
CM002459.1supercontigCM002459.1:19953..20042 -
CM002459.1supercontigCM002459.1:19721..19794 -
CM002459.1supercontigCM002459.1:18925..19037 -
CM002459.1supercontigCM002459.1:18619..18772 -
CM002459.1supercontigCM002459.1:18327..18404 -
CM002459.1supercontigCM002459.1:18023..18143 -
CM002459.1supercontigCM002459.1:17480..17641 -
CM002459.1supercontigCM002459.1:17217..17329 -
CM002459.1supercontigCM002459.1:17013..17114 -
CM002459.1supercontigCM002459.1:16614..16758 -
CM002459.1supercontigCM002459.1:16106..16269 -
CM002459.1supercontigCM002459.1:15811..15933 -
CM002459.1supercontigCM002459.1:15457..15627 -
CM002459.1supercontigCM002459.1:15238..15321 -
CM002459.1supercontigCM002459.1:14950..15099 -
CM002459.1supercontigCM002459.1:14605..14731 -
CM002459.1supercontigCM002459.1:14344..14532 -
CM002459.1supercontigCM002459.1:14107..14191 -
CM002459.1supercontigCM002459.1:13989..14061 -
CM002459.1supercontigCM002459.1:13818..13910 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007155cell adhesion
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR002159CD36
Homology
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|585110788|gb|EWM28404.1| (cd36-like class b scavenger receptor [Nannochloropsis gaditana])

HSP 1 Score: 2109.72 bits (5465), Expect = 0.000e+0
Identity = 1033/1033 (100.00%), Postives = 1033/1033 (100.00%), Query Frame = 0
Query:    1 MFGIKRHRNHSMDEEAGYGREEGNRLGGVRPDDQAKEGVELIDHHHSKISDLKDTHRAADESSEEEEEEEDENEEDDDDEEEEEEEGGVRKGRRKAGGTWFKGYTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSINTAYATGVARKLAESNMVRIGVPRILSPFRDKGLPQLSLDIRALTAYIRGLLDTGKDLGISSTAAAQFWNETQDFSLVALNTPEAQARRGLLLYTGSPAGRAAIPKEVEVGAGLTDAQVDEVAAYVMRILSAPEVEARVLKAVGLDEAVYPTVDALVMRQFTMADVLGILGGAPEALQGISLPQVNQGNIYVEESLTPGPATEAVPMIELGYILRSAKTHAFLPAPPSLPTWLPPATPRSVAELKAQGWGDVVKGECIFDVLLTNRTYFENAVLGIPAFLLEDDFTHLHASMSSPLVLGGVEECLAVGPMLGDGTRAPTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAFYSLLSNTEGPLDAPHAFCTSSADVNHALYGCFLDTEASTPTKSVYRKTPSRYATGKADISDVQQLQAYAGLTGDVPVMYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPFLLQDLPSPPPLWVLRLKGPIVIRFSYTNNTKRHGIPLRRFTLSQDLFEARDDLALIDVGAGELAVRQSTFMNVTLGTWMPTFMADSPSAGFQFMPAFAASSPQVLEQAKGMEGTTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVNGIILSAIPVGIIMFLLGLVVLGKEGRADGLYSIGPKLFIHFGRHGTEPPAIAAAQVHDIKQTLRVLHKEKYAGVILRN 1033
            MFGIKRHRNHSMDEEAGYGREEGNRLGGVRPDDQAKEGVELIDHHHSKISDLKDTHRAADESSEEEEEEEDENEEDDDDEEEEEEEGGVRKGRRKAGGTWFKGYTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSINTAYATGVARKLAESNMVRIGVPRILSPFRDKGLPQLSLDIRALTAYIRGLLDTGKDLGISSTAAAQFWNETQDFSLVALNTPEAQARRGLLLYTGSPAGRAAIPKEVEVGAGLTDAQVDEVAAYVMRILSAPEVEARVLKAVGLDEAVYPTVDALVMRQFTMADVLGILGGAPEALQGISLPQVNQGNIYVEESLTPGPATEAVPMIELGYILRSAKTHAFLPAPPSLPTWLPPATPRSVAELKAQGWGDVVKGECIFDVLLTNRTYFENAVLGIPAFLLEDDFTHLHASMSSPLVLGGVEECLAVGPMLGDGTRAPTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAFYSLLSNTEGPLDAPHAFCTSSADVNHALYGCFLDTEASTPTKSVYRKTPSRYATGKADISDVQQLQAYAGLTGDVPVMYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPFLLQDLPSPPPLWVLRLKGPIVIRFSYTNNTKRHGIPLRRFTLSQDLFEARDDLALIDVGAGELAVRQSTFMNVTLGTWMPTFMADSPSAGFQFMPAFAASSPQVLEQAKGMEGTTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVNGIILSAIPVGIIMFLLGLVVLGKEGRADGLYSIGPKLFIHFGRHGTEPPAIAAAQVHDIKQTLRVLHKEKYAGVILRN
Sbjct:    1 MFGIKRHRNHSMDEEAGYGREEGNRLGGVRPDDQAKEGVELIDHHHSKISDLKDTHRAADESSEEEEEEEDENEEDDDDEEEEEEEGGVRKGRRKAGGTWFKGYTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSINTAYATGVARKLAESNMVRIGVPRILSPFRDKGLPQLSLDIRALTAYIRGLLDTGKDLGISSTAAAQFWNETQDFSLVALNTPEAQARRGLLLYTGSPAGRAAIPKEVEVGAGLTDAQVDEVAAYVMRILSAPEVEARVLKAVGLDEAVYPTVDALVMRQFTMADVLGILGGAPEALQGISLPQVNQGNIYVEESLTPGPATEAVPMIELGYILRSAKTHAFLPAPPSLPTWLPPATPRSVAELKAQGWGDVVKGECIFDVLLTNRTYFENAVLGIPAFLLEDDFTHLHASMSSPLVLGGVEECLAVGPMLGDGTRAPTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAFYSLLSNTEGPLDAPHAFCTSSADVNHALYGCFLDTEASTPTKSVYRKTPSRYATGKADISDVQQLQAYAGLTGDVPVMYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPFLLQDLPSPPPLWVLRLKGPIVIRFSYTNNTKRHGIPLRRFTLSQDLFEARDDLALIDVGAGELAVRQSTFMNVTLGTWMPTFMADSPSAGFQFMPAFAASSPQVLEQAKGMEGTTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVNGIILSAIPVGIIMFLLGLVVLGKEGRADGLYSIGPKLFIHFGRHGTEPPAIAAAQVHDIKQTLRVLHKEKYAGVILRN 1033          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|585104049|gb|EWM23168.1| (uncharacterized protein Naga_100043g43 [Nannochloropsis gaditana])

HSP 1 Score: 171.014 bits (432), Expect = 1.463e-39
Identity = 224/948 (23.63%), Postives = 373/948 (39.35%), Query Frame = 0
Query:  114 GLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFG--GTDSWNITSINTAYATGVARKLAESNMVRI----GVPRILSPFRDKGLPQ---------LSLDIRALTAYIRGLLDT-----------------GKDLGISSTA-----------------------------------AAQFWNETQDFSLVALNTPEAQARRGLLLYTGSPAGRAAIPKEVEVGAGLTDAQVDEVAAYVMRILSAPEVEARVLKAVGLDEAVYPTVDA----------LVMRQFTMADVLGILGGAPEALQGISLPQVNQGNIYVEESLTPGPATEAVPMIELGYILRSAKTHAFLPAPPSLPTWLPPATPRSVAELKAQGWGDVVKGECIFDVLLTNRTYFENAVLGIPAFLLEDDFTHLHASMSSP-LVLGGVEECLAVGPMLGDGTRA--PTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAF-YSLLSNTEGPLDAPHAFCTSSADVNHALYGCFL-------DTEASTPTKSVYRKTPSRYATGKADISDVQQLQAYAGLTGDVPVMYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPFLLQDLPSPPPLWVLRLKGP---IVIRFSYTNNTKRHGIPLRRFTLSQDLF-EARDDLALIDVGAGELAVRQSTFMNVT-LGTWMPTFMADSPSAGFQFMPAFAASSPQVLEQAKGMEG------TTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVN-GIILSA 961
            GL+++A+AG++          K+R+ +VV +     E   W   +   TP     H YN+TN  +FL G  P    VGPF+++Q  ++ +V F+ +G  V + T     +Q E T      D  ++ S+N  Y+  +    +ESN+++I    G+  +L   +   LP          + + + A+T  +  +                    GK  G S+ A                                     + W+ T  +S++ ++   A  R G+  +     G   +   + +  G+T  Q + + AY++ I  +P +E  V+K + L+    P  DA           + RQ+ + DV+  L       + ++ P          ES+ P    E  P  E  +    A    F      L                     +  + +C FD+      YF+  VLG+P             S+S P  V  G+E+    G  L D         DWA LQ YL ++ +  + PL +  V++ NGGLV+ +T++E   G+  P+L LSL  D P A  +SLL+N +  LD P   C SS DV +    C         + + S     ++ K P+ Y TG+ D         Y G    +  ++P G                SIP +   +                  P +IQ G+S G QFPPF   D P+     VL +  P   + +RF+++ +    G+ L+RF L  + F  +R D        G   V+Q    N+T L T +  F            P +  + P  +    G+ G       +YIDVEP+TGK+++   Q QL+   +     A+D F++  Y    LP + +     +   DA   +  +Y   K++    I+SA
Sbjct:  264 GLLLMALAGVVDIEGNAYRHAKIREAIVVDA-PNHPEFKAWATGAQQKTPLFYTYHLYNITNPEEFLAGQPPQVHEVGPFSFQQRTKKINVTFSDEGRLVSYITQ----IQHEFTGDPEELDRQSVYSLNLPYSVAIYTAGSESNLLKIGSQQGLAEVLFQMKTYFLPALKENAVVMAIQMAVDAMTQILNAMQAPSEATATRWGGGCTSNMFGKICGFSTVATFFSAVDKRNKMDLNLLQLCINTKLTEAEQIPLATVRRLWDPTDVYSIMNVDRGSAAERYGISYWLW---GDVDVRDTIAMHFGITIRQYNALRAYLLDIYRSPMLEMAVVK-IFLES--LPPEDAGTAEVAQWSDFLWRQWAVGDVVTRLKN-----ESMARP----------ESMQP----ELPP--EFAWYAEKAGYKTFTYGGKRL---------------------NRTQAKCTFDLAKRPMVYFQTYVLGLPG-----------PSISRPTFVDFGLEDS---GEPLIDPRDCFQSKNDWALLQGYLAYLAEYFVAPLLQEDVLDKNGGLVTRKTLRECLYGYSAPILQLSLAKDDPRAMKFSLLAN-DPSLDGP-GRCLSSNDVENPFTACRFSSRNITQNMDGSEQVARIFDKVPNTYHTGRDDTVRAGAFYTYRG-DRSIADIWPGG----------------SIPFAGGTKDL----------------PGSIQYGYSDGMQFPPFGAIDGPNV----VLSVFVPGFVLPLRFAFSEDVDVQGVKLKRFRLVPETFSSSRSDAKTF----GMDKVQQEGLFNLTGLMTGLTYFSK----------PHYRPTPPFDMSDVGGLAGFDPARDDSYIDVEPVTGKTMNANIQLQLNAGITPE---AFDKFHNSVYPVKALPVLHVAQHAGIVPEDAKFFKNMVYGTEKLIKLTTIISA 1088          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|585106443|gb|EWM24843.1| (CD36 antigen [Nannochloropsis gaditana])

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-15
Identity = 133/565 (23.54%), Postives = 225/565 (39.82%), Query Frame = 0
Query:  496 ECIFDVLL--TNRTYFENAVLGIPAFLLEDD---FTHLHASMS-SPLV-LGGVEECLAVGPMLGDGTRAPTPDWADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAFYSLLSNTEGPLDAPHAFCTSSADVNHALYGCFLDTEASTPTKSV-YRKTPSRYATGKADISDVQQLQAYAGLTGDVPV-MYPSGQRTPVAMPDAVAELASSIPLSTSLRRTQTETFPPPESINASYSPSAIQRGFSTGEQFPPF-----------------------------------------LLQDLPSPPPLWVLRLKGPIVIRFSYTN-NTKRHGIP-LRRFTLSQDLFEARDDLALIDVGAGELAVRQSTFMNVTLGTWMPTFMADSPSAG---FQFMPAFAASSPQVLEQAKGMEGTTYIDVEPMTGKSLSRRTQAQLSISTSSPGSGAYDLFYDEAYKGPFLPTVFMVTETFLDKRDASGIRAALYTPGKVVNGI--------ILSAIPVGIIMFLLGLVVLG-KEGRADGLYSIGPKLFIHF 996
            +C+ D++L  T+  +F   VLG+P    +     F  + ++M+ SP      +E+CL     +  G       W+ +  Y +++G++   P  R  V+  NGGL+ TR+V+    G  EP+L+ SL  + P  ++ +++  E  ++AP   C   +D+ +    C   T  + PT  + Y+K  + Y TGK     +  +  Y G   DV   ++P G+                IP+       Q                S +Q G+S GEQFPP                                            + + SP  + V      + +RF Y        G+  L RF LS   F  R   A +    G  A  +   +N+T     P F++     G    Q +   +A +     +++   G +++D+EP TG++LS     Q+S ST    +  YD+F+ E Y    +P ++M  +  +   DA+  +  +  P   V  +        IL+A  VG+ + LLG   L  K GR     S   +   HF
Sbjct:   87 KCMRDLILRETDADFFAETVLGLPPSPTQTSRKTFLDVESAMARSPEASKAALEQCL-----VSQGA------WSVMLGYFDYLGRTFAGPHLREHVVEANGGLIVTRSVQSWLEGRPEPILSSSLPPNDPRIWFGIMTEDEK-MEAPGK-CVQVSDIENMYSACSPVTAPTDPTTLLYYKKVANTYHTGKKHPDRLGAMAKYKG--DDVAWGIWPRGK----------------IPILGGAEAGQG---------------SVVQYGYSEGEQFPPLNRILRATEAYVGPGLVAGLEKTFNSLAATGNATTTTALAAMTEETVESPTDMLVFMSNFVLPVRFQYRGPRAPIQGLTGLHRFGLSPLNFSPRRRDAALYSMDGPRA--REGLLNMTDIKGAPFFLSPPHYLGCPKLQSLECLSAVATIPQGESEAAVG-SHLDIEPYTGRTLSASVSLQVSSSTMG-AARVYDVFHAETYTAEVVPLLWMTHQAEVGPEDAALFQELVNAPLDFVTKVQRLTLLVGILTA-GVGLFLALLGFFCLCRKSGRGSKTESDARRARGHF 600          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|585100952|gb|EWM20970.1| (CD36 antigen [Nannochloropsis gaditana])

HSP 1 Score: 79.337 bits (194), Expect = 1.061e-11
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 0
Query:  562 WADLQTYLNFVGKSSIEPLFRFIVINNNGGLVSTRTVKELALGHQEPLLTLSLGADAPSAFYSLLS-----NTEGPLDAPHAFCTSSADVNHALYGC--FLDTEASTPTKSVYRKTPSRYATGKADISDVQQLQAYAG 692
            W  +Q Y++ +    ++P+    VI +NGGLV TR+V     G +EP+L LSL +  P   +S L        EG ++  H  C  S DV + +  C   LD EAS   +  YRKTPS + TGK     + QL A+ G
Sbjct:    8 WGVMQGYIDHLAVHFVKPVVETDVIRSNGGLVVTRSVHSWLTGRREPILALSLDSSDPRVLFSFLGADLSLTPEGGVEGGHGTCRMSNDVENTVTACAPVLD-EASGEIRE-YRKTPSTFHTGKHFPHRIGQLAAHHG 143          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|585106442|gb|EWM24842.1| (scavenger receptor class member 2 [Nannochloropsis gaditana])

HSP 1 Score: 73.559 bits (179), Expect = 6.396e-10
Identity = 49/155 (31.61%), Postives = 77/155 (49.68%), Query Frame = 0
Query:  123 ILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHT--------PTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTD---SWNITSINTAYATGVARKLAESNMVRIGVPRIL 266
            + H   PE   ++  + LVV S         W+  +S  +        PT+   +F++L N+  FL G  P +   GP+T+RQ +++ DV F+  G+ V + T  +    PE +  G D   S  +T +N AYAT VA   +ESN++R G  R L
Sbjct:  168 VSHTYLPEWRDKRALESLVVDS-PDHPNYAAWVNHASPSSAGRGEGDSPTYQRFYFFHLVNSKGFLQGKKPFYLEKGPYTFRQTKKKVDVNFSEKGTLVSYVTLVQNKYSPEQS--GKDVALSDTVTMLNLAYATAVATFGSESNLLRYGSRRAL 319          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|1067100687|ref|XP_018012447.1| (PREDICTED: lysosome membrane protein 2-like [Hyalella azteca])

HSP 1 Score: 71.2478 bits (173), Expect = 5.058e-9
Identity = 40/148 (27.03%), Postives = 81/148 (54.73%), Query Frame = 0
Query:  111 MGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSINTAYATGVARKLAESNMV 258
              +G + L    +L + FP + +RKL +KLV+   +    T+G   ++ +  P ++  +F+N+TN  + L G+ PA + +GPFTY + R + D+ +    + V++  N K   QPE++ G T+   IT++N    +  ++   +++ +
Sbjct:   10 CAVGFLFLVFGFVLIQKFPAVVQRKLGEKLVIRPDSP---TIGNFIETPI--PVYMQFYFFNVTNPQEILTGSRPALQEIGPFTYLEKRLKHDLNWT--DTTVEYLENTKFFFQPEMSNGLTEETPITTVNPVLISVASKATGKNSFI 150          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|642086719|emb|CDQ83821.1| (unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 70.0922 bits (170), Expect = 6.949e-9
Identity = 51/156 (32.69%), Postives = 74/156 (47.44%), Query Frame = 0
Query:  108 LTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSIN---TAYATGVARKLAESNMVRI 260
            L  +GIGLVV  V       F  L   +L+ ++ +T  ++  ET  W        P  +   F+N+TN  +FL GA P    VGP+TYR++R + +V F  +G+ V        V  PE + G  D   IT+IN    A    V     +S+MV I
Sbjct:   18 LLIIGIGLVVTQV-------FQTLIHNRLKKEITLTEGSRVFET--WKNPPP---PVFMQYFFFNVTNPDEFLDGAKPVVSQVGPYTYREYRPKENVTFVDNGTRVSAYQPKTFVFLPERSVGDPDDDMITTINIPAVAVMNKVKDSFWKSSMVSI 161          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|923130739|ref|XP_013758835.1| (lysosome membrane protein 2 [Thecamonas trahens ATCC 50062] >gi|906555025|gb|KNC48268.1| lysosome membrane protein 2 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 70.4774 bits (171), Expect = 1.162e-8
Identity = 56/185 (30.27%), Postives = 89/185 (48.11%), Query Frame = 0
Query:   89 VRKGRRKAGGTWFKGYTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWL-----GDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELT-FGGTDSWNITSINTAYATGVARKLAESNMVRIGVPRILS 267
            + + RRKA         +G+T    GL+++A A  ++   P L ++K+ D +V+ S   +     W+     G+S L + T     F+NLTNA D L GA P FE VGPF YR+   + D  F   G+ V F    +    PE + +   D   +T+    Y   V +  +E N++   +P +LS
Sbjct:    3 ILQTRRKA---------VGITACVAGLLLIAAATTVYLLIPYLVQKKINDAVVIDS-PNSSGYDNWVSSYHSGNSELQSYT-----FFNLTNAPDVLAGAAPVFEPVGPFVYRRNTVKLDPKFLDGGARVSFKEMSQYSFVPEQSIYDQLDKVLLTNYFPFYQAAVNKAGSEKNLLYGFLPTLLS 172          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|1158872827|ref|XP_020340328.1| (lysosome membrane protein 2-like [Oncorhynchus kisutch])

HSP 1 Score: 68.9366 bits (167), Expect = 2.441e-8
Identity = 52/156 (33.33%), Postives = 74/156 (47.44%), Query Frame = 0
Query:  108 LTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSIN---TAYATGVARKLAESNMVRI 260
            L  +GIGLVV  V       F  L   +L+ ++ +T  ++  ET  W        P  +   F+N+TN  DFL GA P    VGP+TYR++R + +V F  +G+ V        V  PE + G  D   IT+IN    A    V     +S+MV I
Sbjct:   18 LLIIGIGLVVTQV-------FQTLIHNRLKKEITLTEGSRVFET--WKNPPP---PVFMQYFFFNVTNPDDFLVGAKPIVSQVGPYTYREYRPKENVTFVDNGTRVSAYQPKTFVFLPERSVGDPDYDMITTINIPAVAVMNKVKDSFWKSSMVSI 161          
BLAST of EWM28404.1 vs. NCBI_GenBank
Match: gi|961901687|ref|XP_014903291.1| (PREDICTED: lysosome membrane protein 2-like [Poecilia latipinna])

HSP 1 Score: 68.9366 bits (167), Expect = 2.519e-8
Identity = 53/214 (24.77%), Postives = 98/214 (45.79%), Query Frame = 0
Query:  104 YTLGLTWMGIGLVVLAVAGILHKAFPELYKRKLRDKLVVTSMAQAEETVGWLGDSSLHTPTHIGLHFYNLTNAADFLGGALPAFELVGPFTYRQFRRRTDVVFAPDGSYVDFTTNFKAVLQPELTFGGTDSWNITSINTAYATGVARKLAESNMVR-IGVP--RILSPFRDKGLPQLSLDIRALTAYIRGLLDTGKDLGISSTAAAQFWNETQD 314
            Y LG   + + ++++ ++ +L KAFP   + K++  +V+ +  +A E   W+   +   P ++  +F+NLTN A+ L G  PA   +GP+TYR++R    VVF  +G+ V        + Q  ++ G                       ES+++R + +P   ++  F+D  +         ++AY+R    TG DL  + T     W    D
Sbjct:    9 YVLGA--LALLMLIVGISLVLSKAFPNFLQSKVKKDVVLRNGTEAFEV--WVDPPA---PIYMQFYFFNLTNPAEVLIGERPAVTEIGPYTYREYRPMEQVVFQENGTRVASVNPKTYIFQRNMSQG----------------------PESDLIRTVNIPAMTLMERFKDNAVAA-----NLISAYMRA---TGIDLFTTHTVGELLWGYEDD 185          
The following BLAST results are available for this feature:
BLAST of EWM28404.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110788|gb|EWM28404.1|0.000e+0100.00cd36-like class b scavenger receptor [Nannochlorop... [more]
gi|585104049|gb|EWM23168.1|1.463e-3923.63uncharacterized protein Naga_100043g43 [Nannochlor... [more]
gi|585106443|gb|EWM24843.1|4.214e-1523.54CD36 antigen [Nannochloropsis gaditana][more]
gi|585100952|gb|EWM20970.1|1.061e-1136.23CD36 antigen [Nannochloropsis gaditana][more]
gi|585106442|gb|EWM24842.1|6.396e-1031.61scavenger receptor class member 2 [Nannochloropsis... [more]
gi|1067100687|ref|XP_018012447.1|5.058e-927.03PREDICTED: lysosome membrane protein 2-like [Hyale... [more]
gi|642086719|emb|CDQ83821.1|6.949e-932.69unnamed protein product [Oncorhynchus mykiss][more]
gi|923130739|ref|XP_013758835.1|1.162e-830.27lysosome membrane protein 2 [Thecamonas trahens AT... [more]
gi|1158872827|ref|XP_020340328.1|2.441e-833.33lysosome membrane protein 2-like [Oncorhynchus kis... [more]
gi|961901687|ref|XP_014903291.1|2.519e-824.77PREDICTED: lysosome membrane protein 2-like [Poeci... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2284rna2284Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications