EWM28422.1, cds2251 (CDS) Nannochloropsis gaditana

Overview
NameEWM28422.1
Unique Namecds2251
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1301289..1301358 +
Alignment locationCM002458.1:1301452..1301651 +
Alignment locationCM002458.1:1301779..1301907 +
Alignment locationCM002458.1:1302448..1302644 +
Alignment locationCM002458.1:1302770..1302962 +
Alignment locationCM002458.1:1303032..1305167 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28422.1
Productkinesin family member 6
Orig transcript idgnl|cribi|Naga_100166g5.1619.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1301289..1301358 +
CM002458.1supercontigCM002458.1:1301452..1301651 +
CM002458.1supercontigCM002458.1:1301779..1301907 +
CM002458.1supercontigCM002458.1:1302448..1302644 +
CM002458.1supercontigCM002458.1:1302770..1302962 +
CM002458.1supercontigCM002458.1:1303032..1305167 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0003777microtubule motor activity
GO:0005524ATP binding
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007018microtubule-based movement
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO:0005871kinesin complex
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR027640Kinesin-like_fam
IPR011993PH-like_dom
IPR001752Kinesin_motor_dom
Homology
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|585110809|gb|EWM28422.1| (kinesin family member 6 [Nannochloropsis gaditana])

HSP 1 Score: 2006.88 bits (5198), Expect = 0.000e+0
Identity = 974/974 (100.00%), Postives = 974/974 (100.00%), Query Frame = 0
Query:    1 MEGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEAASSPVAFLPSSSGASCVPSAYQWVYTLSRPLVAHCAQLLLRGESMREGGIKEGATEGKKSASVTIHQPPNLEHENDGMLRHPYYNHRQQHQHHHHHHHQQQQQQQYCDPSFPIKESSCNAPEEEGPHLHGSSSQHRLQSPCAMPVLQAITAAPIQSKQKGRKPKAGNIDWGVKERLQQGQIFFKLGRGGKRHERFLWVSPDMASLRWRKLGRRGGGDGRRDGNKIEALSPTPVSTSLPFAECQRVVVGRDSGSPERGASKNRDGSACFTLYSHDRYVTFEAPRGSQRELLRDAWVAALAHMIHRTQGLTTYRDIHSMSHEHMFGKTRSGVESGPSILPESCAQSEMHDDPTGYKDAESHRQSRSQGEEQCKIEEETPVSAQELPYHREGRSPRVQEYPSMPSAFWTSHTQEPTRYIYPAMSEIPAPAFFTHAQHSLDRQNFCNPHSHQQRHSREALLHRSLSGSNAFLADQSTQGDDHEAPRQSYPDQNDSSFRSFTTPQRKMGSRRDNEQQSAVSSNSRTVNSSEDRYRVPSEASSHPINPNLAATHPASMQSNMQRSGSQTPLKEGAQAERQGSGEVNLHPSLITPSTEVLPHERERAGVAARQGVEESSIQHVGEGREWGRSSREGTLACEGKGYPIYPPPRPNVLTTLFVHTGSLPKGPSPEFSSSPQLSSTSRRHHTLSGSAPSPSSAYPRYSPSQPPDVALSSPPSLPREEKAFTASAERGSYSTKTALVPAYASPSSFRSPSSASFYSAFKRGGSRSQTQASTHDTVNSRQNTSSSFVTSIMVALGGRRKEEKRAEAHASHTPEREKNSGSYAAQGLLKRTASINQQARRAMY 974
            MEGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEAASSPVAFLPSSSGASCVPSAYQWVYTLSRPLVAHCAQLLLRGESMREGGIKEGATEGKKSASVTIHQPPNLEHENDGMLRHPYYNHRQQHQHHHHHHHQQQQQQQYCDPSFPIKESSCNAPEEEGPHLHGSSSQHRLQSPCAMPVLQAITAAPIQSKQKGRKPKAGNIDWGVKERLQQGQIFFKLGRGGKRHERFLWVSPDMASLRWRKLGRRGGGDGRRDGNKIEALSPTPVSTSLPFAECQRVVVGRDSGSPERGASKNRDGSACFTLYSHDRYVTFEAPRGSQRELLRDAWVAALAHMIHRTQGLTTYRDIHSMSHEHMFGKTRSGVESGPSILPESCAQSEMHDDPTGYKDAESHRQSRSQGEEQCKIEEETPVSAQELPYHREGRSPRVQEYPSMPSAFWTSHTQEPTRYIYPAMSEIPAPAFFTHAQHSLDRQNFCNPHSHQQRHSREALLHRSLSGSNAFLADQSTQGDDHEAPRQSYPDQNDSSFRSFTTPQRKMGSRRDNEQQSAVSSNSRTVNSSEDRYRVPSEASSHPINPNLAATHPASMQSNMQRSGSQTPLKEGAQAERQGSGEVNLHPSLITPSTEVLPHERERAGVAARQGVEESSIQHVGEGREWGRSSREGTLACEGKGYPIYPPPRPNVLTTLFVHTGSLPKGPSPEFSSSPQLSSTSRRHHTLSGSAPSPSSAYPRYSPSQPPDVALSSPPSLPREEKAFTASAERGSYSTKTALVPAYASPSSFRSPSSASFYSAFKRGGSRSQTQASTHDTVNSRQNTSSSFVTSIMVALGGRRKEEKRAEAHASHTPEREKNSGSYAAQGLLKRTASINQQARRAMY
Sbjct:    1 MEGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEAASSPVAFLPSSSGASCVPSAYQWVYTLSRPLVAHCAQLLLRGESMREGGIKEGATEGKKSASVTIHQPPNLEHENDGMLRHPYYNHRQQHQHHHHHHHQQQQQQQYCDPSFPIKESSCNAPEEEGPHLHGSSSQHRLQSPCAMPVLQAITAAPIQSKQKGRKPKAGNIDWGVKERLQQGQIFFKLGRGGKRHERFLWVSPDMASLRWRKLGRRGGGDGRRDGNKIEALSPTPVSTSLPFAECQRVVVGRDSGSPERGASKNRDGSACFTLYSHDRYVTFEAPRGSQRELLRDAWVAALAHMIHRTQGLTTYRDIHSMSHEHMFGKTRSGVESGPSILPESCAQSEMHDDPTGYKDAESHRQSRSQGEEQCKIEEETPVSAQELPYHREGRSPRVQEYPSMPSAFWTSHTQEPTRYIYPAMSEIPAPAFFTHAQHSLDRQNFCNPHSHQQRHSREALLHRSLSGSNAFLADQSTQGDDHEAPRQSYPDQNDSSFRSFTTPQRKMGSRRDNEQQSAVSSNSRTVNSSEDRYRVPSEASSHPINPNLAATHPASMQSNMQRSGSQTPLKEGAQAERQGSGEVNLHPSLITPSTEVLPHERERAGVAARQGVEESSIQHVGEGREWGRSSREGTLACEGKGYPIYPPPRPNVLTTLFVHTGSLPKGPSPEFSSSPQLSSTSRRHHTLSGSAPSPSSAYPRYSPSQPPDVALSSPPSLPREEKAFTASAERGSYSTKTALVPAYASPSSFRSPSSASFYSAFKRGGSRSQTQASTHDTVNSRQNTSSSFVTSIMVALGGRRKEEKRAEAHASHTPEREKNSGSYAAQGLLKRTASINQQARRAMY 974          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|971508788|dbj|GAQ89410.1| (Kinesin-like protein [Klebsormidium nitens])

HSP 1 Score: 136.346 bits (342), Expect = 5.558e-29
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAE 133
            E KYINLSLH+LEQVIVALQE+++                             G++  H+PYRNS+MTS+LRDSLGGNCRTV + T+N+  + LEE++STCRFAQR AQ+S  V VNEE+DP  +   L+ E
Sbjct:  271 EAKYINLSLHFLEQVIVALQERSQ-----------------------------GKARSHVPYRNSMMTSVLRDSLGGNCRTVMIATVNTSAEQLEETISTCRFAQRVAQISNQVYVNEELDPVLVIRRLKQE 373          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|1176096564|ref|XP_020618893.1| (kinesin-like protein KIF6 [Orbicella faveolata])

HSP 1 Score: 132.88 bits (333), Expect = 2.721e-28
Identity = 68/133 (51.13%), Postives = 80/133 (60.15%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEA 134
            E KYINLSLHYLEQVIVAL +K+R                                  HIPYRNS+MTS+LRDSLGGNC T  + T + E  +L+ES+STCRFAQR A +  DVL+NEEIDP  L A L+AE 
Sbjct:   60 EAKYINLSLHYLEQVIVALSDKSR---------------------------------SHIPYRNSMMTSVLRDSLGGNCMTTMIATCSLEKKNLDESISTCRFAQRVAMIKNDVLLNEEIDPKLLIAQLKAEV 159          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|558208089|ref|XP_006107047.1| (PREDICTED: kinesin-like protein KIF6 [Myotis lucifugus])

HSP 1 Score: 121.709 bits (304), Expect = 5.909e-28
Identity = 64/133 (48.12%), Postives = 78/133 (58.65%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEA 134
            E KYINLSLHYLEQVI+AL EK R                                  HIPYRNS+MTS+LRDSLGGNC T  + TL+ E  +++ES+STCRFAQR A +  + ++NEEIDP  + A LQ E 
Sbjct:   60 EAKYINLSLHYLEQVIIALSEKHRS---------------------------------HIPYRNSMMTSVLRDSLGGNCMTTMIATLSLEKRNIDESISTCRFAQRVALIKNEAVLNEEIDPRLMIARLQKEV 159          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|1005457714|ref|XP_015765979.1| (PREDICTED: kinesin-like protein KIF6 [Acropora digitifera])

HSP 1 Score: 130.954 bits (328), Expect = 3.280e-27
Identity = 68/133 (51.13%), Postives = 80/133 (60.15%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEA 134
            E KYINLSLHYLEQVIVAL EK+R                                  HIPYRNS+MTS+LRDSLGGNC T  + T + E  +L+ES+STCRFAQR A +  DVL+NEEIDP  + A L+AE 
Sbjct:  268 EAKYINLSLHYLEQVIVALSEKSRS---------------------------------HIPYRNSMMTSVLRDSLGGNCMTTMIATCSLEKKNLDESISTCRFAQRVAMIKNDVLLNEEIDPKLMIAQLKAEV 367          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|909139989|gb|KNE65156.1| (hypothetical protein AMAG_10809 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 128.642 bits (322), Expect = 1.409e-26
Identity = 79/174 (45.40%), Postives = 98/174 (56.32%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEAA--SSPVAFLPSSSGASCVPSAYQWVYTLSRPLVAHCAQLL 173
            E K+INLSLHYLEQVIVAL EK+                  LG+              HIPYRNS+MTSILRDSLGGNC+T  + TL +E   LEES+STCRFAQR A +S  V VNEE+DP  + A L+A+ A   + +A L   +G    P+     Y + R     C QL+
Sbjct:  311 EAKHINLSLHYLEQVIVALHEKS------------------LGK------------RMHIPYRNSMMTSILRDSLGGNCKTCMIATLATEEHLLEESISTCRFAQRVALISNRVSVNEEVDPQLIIAKLRAQVAQLKAELALLRGDAGGD--PTDELPEYEIDR-----CRQLI 447          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|909126949|gb|KNE54260.1| (hypothetical protein AMAG_00252 [Allomyces macrogynus ATCC 38327])

HSP 1 Score: 127.872 bits (320), Expect = 2.148e-26
Identity = 79/174 (45.40%), Postives = 98/174 (56.32%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEAA--SSPVAFLPSSSGASCVPSAYQWVYTLSRPLVAHCAQLL 173
            E K+INLSLHYLEQVIVAL EK+                  LG+              HIPYRNS+MTSILRDSLGGNC+T  + TL +E   LEES+STCRFAQR A +S  V VNEE+DP  + A L+A+ A   + +A L   +G    P+     Y + R     C QL+
Sbjct:  311 EAKHINLSLHYLEQVIVALHEKS------------------LGK------------RMHIPYRNSMMTSILRDSLGGNCKTCMIATLATEEHLLEESISTCRFAQRVALISNRVSVNEEVDPQLIIAKLRAQVAQLKAELALLRGDAGGD--PTDELPEYEIDR-----CRQLI 447          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|673016564|ref|XP_008862243.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574481446|gb|ETW08438.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 126.331 bits (316), Expect = 3.825e-26
Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAE 133
            EG++INLSLH+LEQVI+ALQ K                          + + G   ++H+PYRNS++TS+LR SLGGNC++VF+ TLN E + ++ES+STCRF QRC+++++DV VNEE+D Y L+  LQAE
Sbjct:  272 EGRFINLSLHHLEQVILALQTKPAA--------------------KKGAKAMGKPPNHHVPYRNSMLTSVLRGSLGGNCKSVFIGTLNPEAEFVDESISTCRFMQRCSEVAVDVHVNEEVDVYVLAELLQAE 383          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|1004147366|gb|KXZ55340.1| (KLP1 protein [Gonium pectorale])

HSP 1 Score: 126.716 bits (317), Expect = 3.986e-26
Identity = 69/133 (51.88%), Postives = 83/133 (62.41%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAEA 134
            E KYINLSLHYLEQVI+ALQEKA           NR+   R           G     HIPYRNS+MT  L+DSLGGNCRT  V T+N+ +D L+ES+STCRFAQR A +   VL+NEE+DP  +   L+ E 
Sbjct:  268 EAKYINLSLHYLEQVIIALQEKAMGM--------NRVGGGRGQGAEGGRCGGGMWRP-HIPYRNSMMTMALKDSLGGNCRTTMVATINAAVDQLDESISTCRFAQRVAMVRNTVLLNEELDPSLIIRRLKQEV 391          
BLAST of EWM28422.1 vs. NCBI_GenBank
Match: gi|156359856|ref|XP_001624980.1| (predicted protein [Nematostella vectensis] >gi|156211789|gb|EDO32880.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 123.635 bits (309), Expect = 4.524e-26
Identity = 64/132 (48.48%), Postives = 79/132 (59.85%), Query Frame = 0
Query:    2 EGKYINLSLHYLEQVIVALQEKARRQKDEDEEITNRLSAPRLGRGSSSSSSTGGQSSYHIPYRNSVMTSILRDSLGGNCRTVFVVTLNSEMDHLEESLSTCRFAQRCAQLSMDVLVNEEIDPYHLSASLQAE 133
            E KYIN+SLH+LEQVIVAL EK+R                                  HIPYRNS+MTS+LRDSLGGNC T  + T + E  +++ES+STCRFAQR A +  DVL+NEEIDP  + A L+ E
Sbjct:  267 EAKYINVSLHFLEQVIVALSEKSRS---------------------------------HIPYRNSMMTSVLRDSLGGNCMTTMIATCSVEKKNIDESISTCRFAQRVAMIKNDVLLNEEIDPKLMIAQLKRE 365          
The following BLAST results are available for this feature:
BLAST of EWM28422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110809|gb|EWM28422.1|0.000e+0100.00kinesin family member 6 [Nannochloropsis gaditana][more]
gi|971508788|dbj|GAQ89410.1|5.558e-2950.00Kinesin-like protein [Klebsormidium nitens][more]
gi|1176096564|ref|XP_020618893.1|2.721e-2851.13kinesin-like protein KIF6 [Orbicella faveolata][more]
gi|558208089|ref|XP_006107047.1|5.909e-2848.12PREDICTED: kinesin-like protein KIF6 [Myotis lucif... [more]
gi|1005457714|ref|XP_015765979.1|3.280e-2751.13PREDICTED: kinesin-like protein KIF6 [Acropora dig... [more]
gi|909139989|gb|KNE65156.1|1.409e-2645.40hypothetical protein AMAG_10809 [Allomyces macrogy... [more]
gi|909126949|gb|KNE54260.1|2.148e-2645.40hypothetical protein AMAG_00252 [Allomyces macrogy... [more]
gi|673016564|ref|XP_008862243.1|3.825e-2647.73hypothetical protein, variant [Aphanomyces invadan... [more]
gi|1004147366|gb|KXZ55340.1|3.986e-2651.88KLP1 protein [Gonium pectorale][more]
gi|156359856|ref|XP_001624980.1|4.524e-2648.48predicted protein [Nematostella vectensis] >gi|156... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2259rna2259Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications