EWM30447.1, cds222 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|585113110|gb|EWM30447.1| (cop9 signalosome complex subunit 7a [Nannochloropsis gaditana]) HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query: 1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK 277
MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK
Sbjct: 1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK 277
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|676390959|ref|XP_009038757.1| (hypothetical protein AURANDRAFT_69877 [Aureococcus anophagefferens] >gi|323450702|gb|EGB06582.1| hypothetical protein AURANDRAFT_69877 [Aureococcus anophagefferens]) HSP 1 Score: 204.912 bits (520), Expect = 1.603e-62 Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 0
Query: 6 GAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQ 189
G+ ALEQF +LAKSAKG A V +IQQ LS+++I VFGELLAMP+++ALRG+EH P+L LLEIFA+GTY DY+ + +PPLTP QL KL+QL+LV+LA++ + YA + EL +D +VR+LED IIE+I GLL+G++DQ FR+ A GRDV+L+ + + KL+ W A A L LE+
Sbjct: 5 GSQALEQFCLLAKSAKGRAVVGIIQQTLSSKRIYVFGELLAMPSVQALRGTEHAPHLDLLEIFAFGTYGDYRAKGDAMPPLTPAQLTKLRQLSLVSLARESAVVAYATMQEELAVD-NVRDLEDAIIETIYAGLLSGKMDQMSAEFRVAKAAGRDVKLDAVGDLAAKLEAWAATAGQLSAELEE 187
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|567980716|gb|ETL31169.1| (hypothetical protein L916_15949 [Phytophthora parasitica]) HSP 1 Score: 202.216 bits (513), Expect = 1.124e-60 Identity = 113/263 (42.97%), Postives = 164/263 (62.36%), Query Frame = 0
Query: 5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGG---RRKVASEGRYKR 264
AGA LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH + LL IF++GTY DY ++ LP LTP Q+ KL++LT+V+LA + +NIPY L ++L + VRE+ED++I++I GL+ G+LDQ+ F +K A+GRD R EDID M+ KL W A + + + ++ + E + R++ + A+A G RG G +G +D + AG G ++++ S GR R
Sbjct: 6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQEVE-EWTREENIRSMMAARA----GERGKGFASGAASLRSGEDFAMYAEAGPRRGAPSKQRMHSMGRKGR 262
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|570318340|gb|ETO66288.1| (hypothetical protein F444_16499 [Phytophthora parasitica P1976]) HSP 1 Score: 200.29 bits (508), Expect = 6.226e-60 Identity = 112/262 (42.75%), Postives = 160/262 (61.07%), Query Frame = 0
Query: 5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKG 266
AGA LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH + LL IF++GTY DY ++ LP LTP Q+ KL++LT+V+LA + +NIPY L ++L + VRE+ED++I++I GL+ G+LDQ+ F +K A+GRD R EDID M+ KL W A + + + ++ + E + R++ + A+A V+G GA +D F +G RR S+ R G
Sbjct: 6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVLGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQEVE-EWTREENIRSMMAARAG--ERVKGFASGAASLRSGED-----FAMYAEAGPRRGAPSKQRMHSMG 258
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|675205675|ref|XP_008911722.1| (hypothetical protein PPTG_16135 [Phytophthora parasitica INRA-310] >gi|568010219|gb|ETL84409.1| hypothetical protein L917_15750 [Phytophthora parasitica] >gi|568040138|gb|ETM37602.1| hypothetical protein L914_15884 [Phytophthora parasitica] >gi|568088316|gb|ETN03178.1| hypothetical protein PPTG_16135 [Phytophthora parasitica INRA-310] >gi|570942123|gb|ETP07380.1| hypothetical protein F441_16340 [Phytophthora parasitica CJ01A1] >gi|570972632|gb|ETP35430.1| hypothetical protein F442_16366 [Phytophthora parasitica P10297]) HSP 1 Score: 197.208 bits (500), Expect = 7.934e-59 Identity = 100/193 (51.81%), Postives = 137/193 (70.98%), Query Frame = 0
Query: 5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA-------ETLLTSLEQR 190
AGA LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH + LL IF++GTY DY ++ LP LTP Q+ KL++LT+V+LA + +NIPY L ++L + VRE+ED++I++I GL+ G+LDQ+ F +K A+GRD R EDID M+ KL W A + T+LT E++
Sbjct: 6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQ 197
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|566014587|gb|ETI37498.1| (hypothetical protein F443_16529 [Phytophthora parasitica P1569]) HSP 1 Score: 197.208 bits (500), Expect = 8.285e-59 Identity = 96/176 (54.55%), Postives = 130/176 (73.86%), Query Frame = 0
Query: 5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA 180
AGA LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH + LL IF++GTY DY ++ LP LTP Q+ KL++LT+V+LA + +NIPY L ++L + VRE+ED++I++I GL+ G+LDQ+ F +K A+GRD R EDID M+ KL W A +
Sbjct: 6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQS 180
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|567952049|gb|ETK77732.1| (hypothetical protein L915_16056 [Phytophthora parasitica]) HSP 1 Score: 197.208 bits (500), Expect = 9.853e-59 Identity = 100/193 (51.81%), Postives = 137/193 (70.98%), Query Frame = 0
Query: 5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA-------ETLLTSLEQR 190
AGA LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH + LL IF++GTY DY ++ LP LTP Q+ KL++LT+V+LA + +NIPY L ++L + VRE+ED++I++I GL+ G+LDQ+ F +K A+GRD R EDID M+ KL W A + T+LT E++
Sbjct: 6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVLGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQ 197
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1173952588|gb|OQS00235.1| (cop9 complex subunit 7a [Thraustotheca clavata]) HSP 1 Score: 194.126 bits (492), Expect = 1.540e-57 Identity = 95/186 (51.08%), Postives = 136/186 (73.12%), Query Frame = 0
Query: 8 GALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGS---EHEPYLRLLEIFAYGTYADYQRQR--GTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLE 188
G+LEQFT+LAK+A+G ACVALIQQVL+ +KI VFGELL MPN+ A+ S E + + RLL +FAYG + DY R++ GT+P LTP Q KL++LT+V+L Q+ + +PY VL EL + G VR++ED++IE++ GL+ G+LDQ+ F A+GRDVR+EDID M++ +Q W NA ++T ++
Sbjct: 7 GSLEQFTLLAKTARGRACVALIQQVLTNKKIFVFGELLHMPNVVAMTTSDQPEQQSHYRLLNVFAYGRFKDYLREKAAGTVPQLTPEQELKLRKLTVVSLCQEFKQVPYKVLMEELQISG-VRDVEDIVIETMYSGLVDGKLDQKNEYFDANYAVGRDVRVEDIDTMINFIQDWQKNATHVVTEID 191
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1133454005|ref|XP_019848998.1| (PREDICTED: COP9 signalosome complex subunit 7b-like [Amphimedon queenslandica]) HSP 1 Score: 193.741 bits (491), Expect = 1.826e-57 Identity = 98/271 (36.16%), Postives = 162/271 (59.78%), Query Frame = 0
Query: 6 GAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRN 276
G LEQF +LAK+A G A LI +S++ + VF ELL M N+++L+G+EHE YL LL IFAYGTY+DY+ +LP L P QL K++ LT+++LA K+ + Y+ L EL+++ +VRELEDLIIE+I +L +LDQ + I IGRD++LE +D M+DKL +W +N +++ +EQ M ++ + ++Q++ +++ ++ +R A F E+F S+ ++++KG+R ++R ++
Sbjct: 11 GKQGLEQFLLLAKTATGAAASQLIMDAISSKGVYVFSELLEMENIQSLKGTEHESYLELLRIFAYGTYSDYKNNLNSLPRLLPAQLIKIKHLTILSLASKNRTLSYSTLLEELEVN-NVRELEDLIIEAIYRNILHAKLDQSNHQLEIDSFIGRDIQLEQLDNMLDKLDQWCSNCASVIQIMEQEMVRANELKSNNNKQKESLEQE--------IKSLRQAVSVAQDFDQQTTSSSEAF------------DSQHKFQKKGLRGSLARSKS 260
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1176314252|ref|XP_020659858.1| (COP9 signalosome complex subunit 7a isoform X2 [Pogona vitticeps]) HSP 1 Score: 186.808 bits (473), Expect = 1.655e-54 Identity = 105/258 (40.70%), Postives = 155/258 (60.08%), Query Frame = 0
Query: 11 EQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVR 268
EQF +LAKSA+G A +LI QVL I VFGELL MPN+ L SE P RLL +FAYGTY+DY + G LPPLT Q KL+ L++VTLA K + IPY+VL +L + +VR+LEDL+IE++ +L G LDQR R + +IGRD+R E++ + LQ+W E +L+S+E+++S + + +Q+ K++++ A+ + ++ A D + S L A G ++ AS+ K KG+R
Sbjct: 13 EQFLLLAKSARGAALASLIHQVLEAPGIYVFGELLDMPNVRELADSEFSPVFRLLTVFAYGTYSDYLAEAGNLPPLTEAQKNKLRHLSVVTLASKLKCIPYSVLLEQLQLK-NVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIRREELSTITRTLQEWCQGCEVVLSSIEEQVSRANQHK----EQQMVLKQQIESEVANLKKTIKVTTAAAAAATSQDSEQHLSELREPAQGTNQRQASKKASKGKGLR 265 The following BLAST results are available for this feature:
BLAST of EWM30447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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