EWM30447.1, cds222 (CDS) Nannochloropsis gaditana

Overview
NameEWM30447.1
Unique Namecds222
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:557700..557792 +
Alignment locationCM002455.1:557896..557958 +
Alignment locationCM002455.1:558036..558111 +
Alignment locationCM002455.1:558290..558378 +
Alignment locationCM002455.1:558519..558724 +
Alignment locationCM002455.1:558807..558854 +
Alignment locationCM002455.1:559025..559283 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30447.1
Productcop9 signalosome complex subunit 7a
Orig transcript idgnl|cribi|Naga_100100g19.8915.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:557700..557792 +
CM002455.1supercontigCM002455.1:557896..557958 +
CM002455.1supercontigCM002455.1:558036..558111 +
CM002455.1supercontigCM002455.1:558290..558378 +
CM002455.1supercontigCM002455.1:558519..558724 +
CM002455.1supercontigCM002455.1:558807..558854 +
CM002455.1supercontigCM002455.1:559025..559283 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
Homology
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|585113110|gb|EWM30447.1| (cop9 signalosome complex subunit 7a [Nannochloropsis gaditana])

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK 277
            MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK
Sbjct:    1 MNSDAGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRNK 277          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|676390959|ref|XP_009038757.1| (hypothetical protein AURANDRAFT_69877 [Aureococcus anophagefferens] >gi|323450702|gb|EGB06582.1| hypothetical protein AURANDRAFT_69877 [Aureococcus anophagefferens])

HSP 1 Score: 204.912 bits (520), Expect = 1.603e-62
Identity = 100/184 (54.35%), Postives = 136/184 (73.91%), Query Frame = 0
Query:    6 GAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQ 189
            G+ ALEQF +LAKSAKG A V +IQQ LS+++I VFGELLAMP+++ALRG+EH P+L LLEIFA+GTY DY+ +   +PPLTP QL KL+QL+LV+LA++   + YA +  EL +D +VR+LED IIE+I  GLL+G++DQ    FR+  A GRDV+L+ +  +  KL+ W A A  L   LE+
Sbjct:    5 GSQALEQFCLLAKSAKGRAVVGIIQQTLSSKRIYVFGELLAMPSVQALRGTEHAPHLDLLEIFAFGTYGDYRAKGDAMPPLTPAQLTKLRQLSLVSLARESAVVAYATMQEELAVD-NVRDLEDAIIETIYAGLLSGKMDQMSAEFRVAKAAGRDVKLDAVGDLAAKLEAWAATAGQLSAELEE 187          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|567980716|gb|ETL31169.1| (hypothetical protein L916_15949 [Phytophthora parasitica])

HSP 1 Score: 202.216 bits (513), Expect = 1.124e-60
Identity = 113/263 (42.97%), Postives = 164/263 (62.36%), Query Frame = 0
Query:    5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGG---RRKVASEGRYKR 264
            AGA  LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH  +  LL IF++GTY DY  ++  LP LTP Q+ KL++LT+V+LA + +NIPY  L ++L +   VRE+ED++I++I  GL+ G+LDQ+   F +K A+GRD R EDID M+ KL  W A +  +   +   ++    +  E +  R++    +  A+A    G RG G  +G       +D   +  AG   G   ++++ S GR  R
Sbjct:    6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQEVE-EWTREENIRSMMAARA----GERGKGFASGAASLRSGEDFAMYAEAGPRRGAPSKQRMHSMGRKGR 262          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|570318340|gb|ETO66288.1| (hypothetical protein F444_16499 [Phytophthora parasitica P1976])

HSP 1 Score: 200.29 bits (508), Expect = 6.226e-60
Identity = 112/262 (42.75%), Postives = 160/262 (61.07%), Query Frame = 0
Query:    5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKG 266
            AGA  LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH  +  LL IF++GTY DY  ++  LP LTP Q+ KL++LT+V+LA + +NIPY  L ++L +   VRE+ED++I++I  GL+ G+LDQ+   F +K A+GRD R EDID M+ KL  W A +  +   +   ++    +  E +  R++    +  A+A     V+G   GA      +D     F     +G RR   S+ R    G
Sbjct:    6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVLGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQEVE-EWTREENIRSMMAARAG--ERVKGFASGAASLRSGED-----FAMYAEAGPRRGAPSKQRMHSMG 258          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|675205675|ref|XP_008911722.1| (hypothetical protein PPTG_16135 [Phytophthora parasitica INRA-310] >gi|568010219|gb|ETL84409.1| hypothetical protein L917_15750 [Phytophthora parasitica] >gi|568040138|gb|ETM37602.1| hypothetical protein L914_15884 [Phytophthora parasitica] >gi|568088316|gb|ETN03178.1| hypothetical protein PPTG_16135 [Phytophthora parasitica INRA-310] >gi|570942123|gb|ETP07380.1| hypothetical protein F441_16340 [Phytophthora parasitica CJ01A1] >gi|570972632|gb|ETP35430.1| hypothetical protein F442_16366 [Phytophthora parasitica P10297])

HSP 1 Score: 197.208 bits (500), Expect = 7.934e-59
Identity = 100/193 (51.81%), Postives = 137/193 (70.98%), Query Frame = 0
Query:    5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA-------ETLLTSLEQR 190
            AGA  LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH  +  LL IF++GTY DY  ++  LP LTP Q+ KL++LT+V+LA + +NIPY  L ++L +   VRE+ED++I++I  GL+ G+LDQ+   F +K A+GRD R EDID M+ KL  W A +        T+LT  E++
Sbjct:    6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQ 197          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|566014587|gb|ETI37498.1| (hypothetical protein F443_16529 [Phytophthora parasitica P1569])

HSP 1 Score: 197.208 bits (500), Expect = 8.285e-59
Identity = 96/176 (54.55%), Postives = 130/176 (73.86%), Query Frame = 0
Query:    5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA 180
            AGA  LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH  +  LL IF++GTY DY  ++  LP LTP Q+ KL++LT+V+LA + +NIPY  L ++L +   VRE+ED++I++I  GL+ G+LDQ+   F +K A+GRD R EDID M+ KL  W A +
Sbjct:    6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVQGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQS 180          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|567952049|gb|ETK77732.1| (hypothetical protein L915_16056 [Phytophthora parasitica])

HSP 1 Score: 197.208 bits (500), Expect = 9.853e-59
Identity = 100/193 (51.81%), Postives = 137/193 (70.98%), Query Frame = 0
Query:    5 AGAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANA-------ETLLTSLEQR 190
            AGA  LEQFT+LAK+A+G ACVALIQQVLS +K+ VF ELL MPN+EAL+ SEH  +  LL IF++GTY DY  ++  LP LTP Q+ KL++LT+V+LA + +NIPY  L ++L +   VRE+ED++I++I  GL+ G+LDQ+   F +K A+GRD R EDID M+ KL  W A +        T+LT  E++
Sbjct:    6 AGAAGLEQFTLLAKNARGRACVALIQQVLSNKKLFVFRELLDMPNVEALKDSEHMEHYELLRIFSFGTYNDYLARKDELPDLTPQQMNKLRKLTVVSLAHRFKNIPYDTLIQDLGV-STVREVEDILIDTIYSGLVLGKLDQKSRCFVVKYAVGRDTRHEDIDDMIQKLSNWKAQSAEICEKINTILTLAEKQ 197          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1173952588|gb|OQS00235.1| (cop9 complex subunit 7a [Thraustotheca clavata])

HSP 1 Score: 194.126 bits (492), Expect = 1.540e-57
Identity = 95/186 (51.08%), Postives = 136/186 (73.12%), Query Frame = 0
Query:    8 GALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGS---EHEPYLRLLEIFAYGTYADYQRQR--GTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLE 188
            G+LEQFT+LAK+A+G ACVALIQQVL+ +KI VFGELL MPN+ A+  S   E + + RLL +FAYG + DY R++  GT+P LTP Q  KL++LT+V+L Q+ + +PY VL  EL + G VR++ED++IE++  GL+ G+LDQ+   F    A+GRDVR+EDID M++ +Q W  NA  ++T ++
Sbjct:    7 GSLEQFTLLAKTARGRACVALIQQVLTNKKIFVFGELLHMPNVVAMTTSDQPEQQSHYRLLNVFAYGRFKDYLREKAAGTVPQLTPEQELKLRKLTVVSLCQEFKQVPYKVLMEELQISG-VRDVEDIVIETMYSGLVDGKLDQKNEYFDANYAVGRDVRVEDIDTMINFIQDWQKNATHVVTEID 191          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1133454005|ref|XP_019848998.1| (PREDICTED: COP9 signalosome complex subunit 7b-like [Amphimedon queenslandica])

HSP 1 Score: 193.741 bits (491), Expect = 1.826e-57
Identity = 98/271 (36.16%), Postives = 162/271 (59.78%), Query Frame = 0
Query:    6 GAGALEQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVREPMSRMRN 276
            G   LEQF +LAK+A G A   LI   +S++ + VF ELL M N+++L+G+EHE YL LL IFAYGTY+DY+    +LP L P QL K++ LT+++LA K+  + Y+ L  EL+++ +VRELEDLIIE+I   +L  +LDQ   +  I   IGRD++LE +D M+DKL +W +N  +++  +EQ M   ++ +   ++Q++  +++        ++ +R     A  F        E+F             S+ ++++KG+R  ++R ++
Sbjct:   11 GKQGLEQFLLLAKTATGAAASQLIMDAISSKGVYVFSELLEMENIQSLKGTEHESYLELLRIFAYGTYSDYKNNLNSLPRLLPAQLIKIKHLTILSLASKNRTLSYSTLLEELEVN-NVRELEDLIIEAIYRNILHAKLDQSNHQLEIDSFIGRDIQLEQLDNMLDKLDQWCSNCASVIQIMEQEMVRANELKSNNNKQKESLEQE--------IKSLRQAVSVAQDFDQQTTSSSEAF------------DSQHKFQKKGLRGSLARSKS 260          
BLAST of EWM30447.1 vs. NCBI_GenBank
Match: gi|1176314252|ref|XP_020659858.1| (COP9 signalosome complex subunit 7a isoform X2 [Pogona vitticeps])

HSP 1 Score: 186.808 bits (473), Expect = 1.655e-54
Identity = 105/258 (40.70%), Postives = 155/258 (60.08%), Query Frame = 0
Query:   11 EQFTILAKSAKGNACVALIQQVLSTRKIVVFGELLAMPNLEALRGSEHEPYLRLLEIFAYGTYADYQRQRGTLPPLTPPQLRKLQQLTLVTLAQKHENIPYAVLFRELDMDGDVRELEDLIIESINMGLLTGRLDQRGGRFRIKGAIGRDVRLEDIDGMMDKLQKWVANAETLLTSLEQRMSEIHDERCELDQQRQDYKEKLQHAKAHPVRGVRGGGGGAGGFGGLDDDDMESFLTAGASGGRRKVASEGRYKRKGVR 268
            EQF +LAKSA+G A  +LI QVL    I VFGELL MPN+  L  SE  P  RLL +FAYGTY+DY  + G LPPLT  Q  KL+ L++VTLA K + IPY+VL  +L +  +VR+LEDL+IE++   +L G LDQR  R  +  +IGRD+R E++  +   LQ+W    E +L+S+E+++S  +  +    +Q+   K++++   A+  + ++     A      D +   S L   A G  ++ AS+   K KG+R
Sbjct:   13 EQFLLLAKSARGAALASLIHQVLEAPGIYVFGELLDMPNVRELADSEFSPVFRLLTVFAYGTYSDYLAEAGNLPPLTEAQKNKLRHLSVVTLASKLKCIPYSVLLEQLQLK-NVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIRREELSTITRTLQEWCQGCEVVLSSIEEQVSRANQHK----EQQMVLKQQIESEVANLKKTIKVTTAAAAAATSQDSEQHLSELREPAQGTNQRQASKKASKGKGLR 265          
The following BLAST results are available for this feature:
BLAST of EWM30447.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113110|gb|EWM30447.1|0.000e+0100.00cop9 signalosome complex subunit 7a [Nannochlorops... [more]
gi|676390959|ref|XP_009038757.1|1.603e-6254.35hypothetical protein AURANDRAFT_69877 [Aureococcus... [more]
gi|567980716|gb|ETL31169.1|1.124e-6042.97hypothetical protein L916_15949 [Phytophthora para... [more]
gi|570318340|gb|ETO66288.1|6.226e-6042.75hypothetical protein F444_16499 [Phytophthora para... [more]
gi|675205675|ref|XP_008911722.1|7.934e-5951.81hypothetical protein PPTG_16135 [Phytophthora para... [more]
gi|566014587|gb|ETI37498.1|8.285e-5954.55hypothetical protein F443_16529 [Phytophthora para... [more]
gi|567952049|gb|ETK77732.1|9.853e-5951.81hypothetical protein L915_16056 [Phytophthora para... [more]
gi|1173952588|gb|OQS00235.1|1.540e-5751.08cop9 complex subunit 7a [Thraustotheca clavata][more]
gi|1133454005|ref|XP_019848998.1|1.826e-5736.16PREDICTED: COP9 signalosome complex subunit 7b-lik... [more]
gi|1176314252|ref|XP_020659858.1|1.655e-5440.70COP9 signalosome complex subunit 7a isoform X2 [Po... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna222rna222Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications