EWM28457.1, cds2216 (CDS) Nannochloropsis gaditana

Overview
NameEWM28457.1
Unique Namecds2216
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1206586..1206589 -
Alignment locationCM002458.1:1206403..1206487 -
Alignment locationCM002458.1:1206037..1206146 -
Alignment locationCM002458.1:1205748..1205872 -
Alignment locationCM002458.1:1205584..1205657 -
Alignment locationCM002458.1:1205352..1205476 -
Alignment locationCM002458.1:1204899..1205057 -
Alignment locationCM002458.1:1204623..1204722 -
Alignment locationCM002458.1:1204376..1204474 -
Alignment locationCM002458.1:1204323..1204326 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28457.1
Productelongation factor tu
Orig transcript idgnl|cribi|Naga_100710g1.7611.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1206586..1206589 -
CM002458.1supercontigCM002458.1:1206403..1206487 -
CM002458.1supercontigCM002458.1:1206037..1206146 -
CM002458.1supercontigCM002458.1:1205748..1205872 -
CM002458.1supercontigCM002458.1:1205584..1205657 -
CM002458.1supercontigCM002458.1:1205352..1205476 -
CM002458.1supercontigCM002458.1:1204899..1205057 -
CM002458.1supercontigCM002458.1:1204623..1204722 -
CM002458.1supercontigCM002458.1:1204376..1204474 -
CM002458.1supercontigCM002458.1:1204323..1204326 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Biological Process
TermDefinition
GO:0042221response to chemical
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO:0005618cell wall
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
IPR000795TF_GTP-bd_dom
Homology
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|585110861|gb|EWM28457.1| (elongation factor tu [Nannochloropsis gaditana])

HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0
Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0
Query:    1 MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV
Sbjct:    1 MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|546327030|ref|XP_005719137.1| (Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus] >gi|507115796|emb|CDF39226.1| Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus])

HSP 1 Score: 370.548 bits (950), Expect = 2.626e-124
Identity = 172/230 (74.78%), Postives = 201/230 (87.39%), Query Frame = 0
Query:   65 SNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            + +A +  +R+ + AFQRTKPHLN+GTIGHVDHGKTTLTAAITKVL+EAGGA F  YD IDKAPEE++R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P +VVF+NKCD+V DEEL+ELVEMEVR+LL FY+FPGDDTPI+RGSAL A++G    +G++A+LKLM  VD+ IP P R+LDKPFLM VEDV
Sbjct:   17 ATSAPSVPARSFADAFQRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEAGGATFTDYDQIDKAPEEKKRGITISTAHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPHIVVFLNKCDVVDDEELIELVEMEVRDLLSFYKFPGDDTPIVRGSALEALQGNKVEIGRDAVLKLMGEVDEYIPEPKRDLDKPFLMSVEDV 246          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|947719528|ref|WP_056381859.1| (elongation factor Tu [Sphingomonas sp. Root710] >gi|946128980|gb|KRB81125.1| elongation factor Tu [Sphingomonas sp. Root710])

HSP 1 Score: 362.073 bits (928), Expect = 2.498e-121
Identity = 168/215 (78.14%), Postives = 192/215 (89.30%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F  Y +IDKAPEER+R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVFMNK D+V D E+LELVE+E+RELL  Y+FPGDD P+I+GSA+ A++G++D +GKNA+LKLM AVD+ IP P R LDKPFLMP+EDV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFMNKVDLVDDAEILELVELEIRELLSSYDFPGDDIPVIQGSAVKALDGSNDEIGKNAVLKLMAAVDEYIPQPERPLDKPFLMPIEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1093299294|emb|SEI24581.1| (translation elongation factor TU, partial [Tardiphaga sp. OK245])

HSP 1 Score: 356.681 bits (914), Expect = 4.137e-121
Identity = 169/215 (78.60%), Postives = 186/215 (86.51%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+R KPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F +YD IDKAPEE+ R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVF+NKCDMV D ELLELVEMEVRELL  Y+FPGDD PII+GSALAA+E +D  LG +AIL+LM  VD  IP P R +D+PFLMPVEDV
Sbjct:    6 FERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQVGVPALVVFLNKCDMVDDPELLELVEMEVRELLSKYDFPGDDIPIIKGSALAALENSDQKLGHDAILELMKNVDSYIPQPERPVDQPFLMPVEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|657880106|ref|WP_029584564.1| (elongation factor Tu [Bradyrhizobium sp. URHD0069])

HSP 1 Score: 361.303 bits (926), Expect = 5.361e-121
Identity = 172/215 (80.00%), Postives = 187/215 (86.98%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F +YD IDKAPEE+ R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P LVVF+NKCDMV D ELLELVEMEVRELL  YEFPGDD PIIRGSALAA+E  D  LG +AIL+LM AVD +IP P R +D+PFLMPVEDV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPALVVFLNKCDMVDDPELLELVEMEVRELLSKYEFPGDDIPIIRGSALAALENKDPKLGHDAILELMKAVDASIPQPARPIDQPFLMPVEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1055299910|ref|WP_066966372.1| (elongation factor Tu [Sphingomonas sp. Ndbn-20])

HSP 1 Score: 360.918 bits (925), Expect = 5.723e-121
Identity = 168/215 (78.14%), Postives = 192/215 (89.30%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F  Y +IDKAPEER+R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVFMNK D+V D E+LELVE+E+RELL  Y+FPGDD P+I+GSA+ A++G++D +GKNA+LKLM AVD+ IP P R LDKPFLMP+EDV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFMNKVDLVDDPEILELVELEIRELLSSYDFPGDDIPVIQGSAVKALDGSNDEIGKNAVLKLMAAVDEYIPQPDRPLDKPFLMPIEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|496128647|ref|WP_008853154.1| (elongation factor Tu [Commensalibacter intestini] >gi|353672536|gb|EHD14232.1| elongation factor Tu [Commensalibacter intestini A911] >gi|1195446464|gb|OUI78374.1| elongation factor Tu [Commensalibacter intestini])

HSP 1 Score: 360.918 bits (925), Expect = 7.435e-121
Identity = 172/215 (80.00%), Postives = 188/215 (87.44%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+R KPH NIGTIGHVDHGKT+LTAAITKVLAEAGGAEF +YD IDKAPEER R ITI+T+HVEY+T KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNKCD V D ELLELVEME+RELL  Y+FPGDD PII+GSAL A+E  D  LGKN IL+LM AVDD IP P R +D+PFLMP+EDV
Sbjct:    6 FERNKPHCNIGTIGHVDHGKTSLTAAITKVLAEAGGAEFTAYDMIDKAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQVGVPALVVFMNKCDQVDDPELLELVEMEIRELLSSYDFPGDDIPIIKGSALVALEDGDAELGKNRILELMAAVDDYIPQPERPVDRPFLMPIEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1200587057|gb|OUW97060.1| (elongation factor Tu [Pelagibacteraceae bacterium TMED237])

HSP 1 Score: 360.533 bits (924), Expect = 1.113e-120
Identity = 169/215 (78.60%), Postives = 191/215 (88.84%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+R KPH NIGT+GHVDHGKTTLTAAITKVLAE+GGAEF +YD IDKAPEE++R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V D+EL++LVEMEVRELL  YEFPGD TPII+GSALAAVEG DD +GKN+I++LM AVD++IP P R  DKPFLMPVEDV
Sbjct:    6 FERNKPHCNIGTVGHVDHGKTTLTAAITKVLAESGGAEFTAYDQIDKAPEEKERGITISTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDKELIDLVEMEVRELLTSYEFPGDTTPIIKGSALAAVEGRDDEIGKNSIMELMKAVDEHIPQPDRPKDKPFLMPVEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|686455027|ref|WP_031934481.1| (elongation factor Tu [Candidatus Hepatobacter penaei])

HSP 1 Score: 360.147 bits (923), Expect = 1.494e-120
Identity = 169/215 (78.60%), Postives = 192/215 (89.30%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE+GGAEF++YD+IDKAPEE+ R ITI+T+HVEYETG RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHI+LAKQVG+P LVVF+NK D V D +L++LVEMEVRELL  YEFPGDD P+IRGSAL A+EG +  +GK+AILKLM+ VD  IP P R++DK FLMPVEDV
Sbjct:    6 FKRTKPHCNIGTIGHVDHGKTSLTAAITKVLAESGGAEFQAYDEIDKAPEEKARGITISTAHVEYETGNRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHIVLAKQVGVPALVVFLNKVDQVDDPDLVDLVEMEVRELLSKYEFPGDDVPVIRGSALCALEGKNPEIGKDAILKLMEEVDSFIPQPTRDVDKDFLMPVEDV 220          
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1056643549|ref|WP_068072884.1| (elongation factor Tu [Novosphingobium lentum])

HSP 1 Score: 359.762 bits (922), Expect = 1.920e-120
Identity = 170/215 (79.07%), Postives = 188/215 (87.44%), Query Frame = 0
Query:   80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
            F+RTKPH NIGTIGHVDHGKTTLTAAITKVLAE GGA F  Y +IDKAPEER+R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDGGILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V D+E+LELVE+EVRELL +Y FPGDD PII+GSALAA+EG DD +GKN+I +LM AVD  IP PPR  DKPFLMPVEDV
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTTLTAAITKVLAETGGAIFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDDEILELVELEVRELLSYYGFPGDDIPIIKGSALAALEGRDDTIGKNSINELMAAVDSYIPQPPRPTDKPFLMPVEDV 220          
The following BLAST results are available for this feature:
BLAST of EWM28457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110861|gb|EWM28457.1|0.000e+0100.00elongation factor tu [Nannochloropsis gaditana][more]
gi|546327030|ref|XP_005719137.1|2.626e-12474.78Translation elongation factor EF-Tu, mitochondrial... [more]
gi|947719528|ref|WP_056381859.1|2.498e-12178.14elongation factor Tu [Sphingomonas sp. Root710] >g... [more]
gi|1093299294|emb|SEI24581.1|4.137e-12178.60translation elongation factor TU, partial [Tardiph... [more]
gi|657880106|ref|WP_029584564.1|5.361e-12180.00elongation factor Tu [Bradyrhizobium sp. URHD0069][more]
gi|1055299910|ref|WP_066966372.1|5.723e-12178.14elongation factor Tu [Sphingomonas sp. Ndbn-20][more]
gi|496128647|ref|WP_008853154.1|7.435e-12180.00elongation factor Tu [Commensalibacter intestini] ... [more]
gi|1200587057|gb|OUW97060.1|1.113e-12078.60elongation factor Tu [Pelagibacteraceae bacterium ... [more]
gi|686455027|ref|WP_031934481.1|1.494e-12078.60elongation factor Tu [Candidatus Hepatobacter pena... [more]
gi|1056643549|ref|WP_068072884.1|1.920e-12079.07elongation factor Tu [Novosphingobium lentum][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2224rna2224Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications