EWM28457.1, cds2216 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|585110861|gb|EWM28457.1| (elongation factor tu [Nannochloropsis gaditana]) HSP 1 Score: 610.912 bits (1574), Expect = 0.000e+0 Identity = 294/294 (100.00%), Postives = 294/294 (100.00%), Query Frame = 0 Query: 1 MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV Sbjct: 1 MQVACHPRLLACISSRTDLLYRQQHTARQWGITMVSALLASRRLVVGCNIRQAANALLVNAYASSNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|546327030|ref|XP_005719137.1| (Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus] >gi|507115796|emb|CDF39226.1| Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus]) HSP 1 Score: 370.548 bits (950), Expect = 2.626e-124 Identity = 172/230 (74.78%), Postives = 201/230 (87.39%), Query Frame = 0 Query: 65 SNAAKAQASRTLSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 + +A + +R+ + AFQRTKPHLN+GTIGHVDHGKTTLTAAITKVL+EAGGA F YD IDKAPEE++R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P +VVF+NKCD+V DEEL+ELVEMEVR+LL FY+FPGDDTPI+RGSAL A++G +G++A+LKLM VD+ IP P R+LDKPFLM VEDV Sbjct: 17 ATSAPSVPARSFADAFQRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEAGGATFTDYDQIDKAPEEKKRGITISTAHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPHIVVFLNKCDVVDDEELIELVEMEVRDLLSFYKFPGDDTPIVRGSALEALQGNKVEIGRDAVLKLMGEVDEYIPEPKRDLDKPFLMSVEDV 246
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|947719528|ref|WP_056381859.1| (elongation factor Tu [Sphingomonas sp. Root710] >gi|946128980|gb|KRB81125.1| elongation factor Tu [Sphingomonas sp. Root710]) HSP 1 Score: 362.073 bits (928), Expect = 2.498e-121 Identity = 168/215 (78.14%), Postives = 192/215 (89.30%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F Y +IDKAPEER+R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVFMNK D+V D E+LELVE+E+RELL Y+FPGDD P+I+GSA+ A++G++D +GKNA+LKLM AVD+ IP P R LDKPFLMP+EDV Sbjct: 6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFMNKVDLVDDAEILELVELEIRELLSSYDFPGDDIPVIQGSAVKALDGSNDEIGKNAVLKLMAAVDEYIPQPERPLDKPFLMPIEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1093299294|emb|SEI24581.1| (translation elongation factor TU, partial [Tardiphaga sp. OK245]) HSP 1 Score: 356.681 bits (914), Expect = 4.137e-121 Identity = 169/215 (78.60%), Postives = 186/215 (86.51%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+R KPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F +YD IDKAPEE+ R ITI+T+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVF+NKCDMV D ELLELVEMEVRELL Y+FPGDD PII+GSALAA+E +D LG +AIL+LM VD IP P R +D+PFLMPVEDV Sbjct: 6 FERNKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQVGVPALVVFLNKCDMVDDPELLELVEMEVRELLSKYDFPGDDIPIIKGSALAALENSDQKLGHDAILELMKNVDSYIPQPERPVDQPFLMPVEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|657880106|ref|WP_029584564.1| (elongation factor Tu [Bradyrhizobium sp. URHD0069]) HSP 1 Score: 361.303 bits (926), Expect = 5.361e-121 Identity = 172/215 (80.00%), Postives = 187/215 (86.98%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F +YD IDKAPEE+ R ITI+T+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P LVVF+NKCDMV D ELLELVEMEVRELL YEFPGDD PIIRGSALAA+E D LG +AIL+LM AVD +IP P R +D+PFLMPVEDV Sbjct: 6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFTAYDQIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPALVVFLNKCDMVDDPELLELVEMEVRELLSKYEFPGDDIPIIRGSALAALENKDPKLGHDAILELMKAVDASIPQPARPIDQPFLMPVEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1055299910|ref|WP_066966372.1| (elongation factor Tu [Sphingomonas sp. Ndbn-20]) HSP 1 Score: 360.918 bits (925), Expect = 5.723e-121 Identity = 168/215 (78.14%), Postives = 192/215 (89.30%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE GGA F Y +IDKAPEER+R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVFMNK D+V D E+LELVE+E+RELL Y+FPGDD P+I+GSA+ A++G++D +GKNA+LKLM AVD+ IP P R LDKPFLMP+EDV Sbjct: 6 FERTKPHCNIGTIGHVDHGKTSLTAAITKVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFMNKVDLVDDPEILELVELEIRELLSSYDFPGDDIPVIQGSAVKALDGSNDEIGKNAVLKLMAAVDEYIPQPDRPLDKPFLMPIEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|496128647|ref|WP_008853154.1| (elongation factor Tu [Commensalibacter intestini] >gi|353672536|gb|EHD14232.1| elongation factor Tu [Commensalibacter intestini A911] >gi|1195446464|gb|OUI78374.1| elongation factor Tu [Commensalibacter intestini]) HSP 1 Score: 360.918 bits (925), Expect = 7.435e-121 Identity = 172/215 (80.00%), Postives = 188/215 (87.44%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+R KPH NIGTIGHVDHGKT+LTAAITKVLAEAGGAEF +YD IDKAPEER R ITI+T+HVEY+T KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNKCD V D ELLELVEME+RELL Y+FPGDD PII+GSAL A+E D LGKN IL+LM AVDD IP P R +D+PFLMP+EDV Sbjct: 6 FERNKPHCNIGTIGHVDHGKTSLTAAITKVLAEAGGAEFTAYDMIDKAPEERARGITISTAHVEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQVGVPALVVFMNKCDQVDDPELLELVEMEIRELLSSYDFPGDDIPIIKGSALVALEDGDAELGKNRILELMAAVDDYIPQPERPVDRPFLMPIEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1200587057|gb|OUW97060.1| (elongation factor Tu [Pelagibacteraceae bacterium TMED237]) HSP 1 Score: 360.533 bits (924), Expect = 1.113e-120 Identity = 169/215 (78.60%), Postives = 191/215 (88.84%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+R KPH NIGT+GHVDHGKTTLTAAITKVLAE+GGAEF +YD IDKAPEE++R ITI+T+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V D+EL++LVEMEVRELL YEFPGD TPII+GSALAAVEG DD +GKN+I++LM AVD++IP P R DKPFLMPVEDV Sbjct: 6 FERNKPHCNIGTVGHVDHGKTTLTAAITKVLAESGGAEFTAYDQIDKAPEEKERGITISTAHVEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDKELIDLVEMEVRELLTSYEFPGDTTPIIKGSALAAVEGRDDEIGKNSIMELMKAVDEHIPQPDRPKDKPFLMPVEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|686455027|ref|WP_031934481.1| (elongation factor Tu [Candidatus Hepatobacter penaei]) HSP 1 Score: 360.147 bits (923), Expect = 1.494e-120 Identity = 169/215 (78.60%), Postives = 192/215 (89.30%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+RTKPH NIGTIGHVDHGKT+LTAAITKVLAE+GGAEF++YD+IDKAPEE+ R ITI+T+HVEYETG RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHI+LAKQVG+P LVVF+NK D V D +L++LVEMEVRELL YEFPGDD P+IRGSAL A+EG + +GK+AILKLM+ VD IP P R++DK FLMPVEDV Sbjct: 6 FKRTKPHCNIGTIGHVDHGKTSLTAAITKVLAESGGAEFQAYDEIDKAPEEKARGITISTAHVEYETGNRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHIVLAKQVGVPALVVFLNKVDQVDDPDLVDLVEMEVRELLSKYEFPGDDVPVIRGSALCALEGKNPEIGKDAILKLMEEVDSFIPQPTRDVDKDFLMPVEDV 220
BLAST of EWM28457.1 vs. NCBI_GenBank
Match: gi|1056643549|ref|WP_068072884.1| (elongation factor Tu [Novosphingobium lentum]) HSP 1 Score: 359.762 bits (922), Expect = 1.920e-120 Identity = 170/215 (79.07%), Postives = 188/215 (87.44%), Query Frame = 0 Query: 80 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETGKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVEGTDDNLGKNAILKLMDAVDDNIPTPPRELDKPFLMPVEDV 294 F+RTKPH NIGTIGHVDHGKTTLTAAITKVLAE GGA F Y +IDKAPEER+R ITI+T+HVEYET RHYAHVDCPGHADYVKNMITGAAQMDGGILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V D+E+LELVE+EVRELL +Y FPGDD PII+GSALAA+EG DD +GKN+I +LM AVD IP PPR DKPFLMPVEDV Sbjct: 6 FERTKPHCNIGTIGHVDHGKTTLTAAITKVLAETGGAIFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGGILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDDEILELVELEVRELLSYYGFPGDDIPIIKGSALAALEGRDDTIGKNSINELMAAVDSYIPQPPRPTDKPFLMPVEDV 220 The following BLAST results are available for this feature:
BLAST of EWM28457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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