EWM28474.1, cds2206 (CDS) Nannochloropsis gaditana

Overview
NameEWM28474.1
Unique Namecds2206
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1180900..1181007 -
Alignment locationCM002458.1:1178142..1180814 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM28474.1
Productpentatricopeptide repeat-containing protein
Orig transcript idgnl|cribi|Naga_100190g5.3125.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1180900..1181007 -
CM002458.1supercontigCM002458.1:1178142..1180814 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|585110884|gb|EWM28474.1| (pentatricopeptide repeat-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1896.32 bits (4911), Expect = 0.000e+0
Identity = 926/926 (100.00%), Postives = 926/926 (100.00%), Query Frame = 0
Query:    1 MASLRLGTKAATGGRNVSLSLRRNMLPLSSLTSSATGHAYKCCNMHGSKRPYTALLSGCRRFTPASPSPASSGSVSSTFSTISPSAQSASSTGNAPLCHRNDVMVKEGAKCKAPNQVHKSLDYDNLASEVMTAVVREDMASAMTSLERMNLIGHPGSPLSITGSLVGATCHAFLSLCQRRHRQTSGGKGLGEALHILSLQNLAASFDMACTRLLFSLLPTSHPAQWSTTFKALDLAFANLPAVAYPSQSLKRTALRQFAEAGRPEEVRWLLTRMQEPFLALSSKTSRAARSRQREKKRGIGKESHPPSLGEVGKLHSSAWHLFKAYLYAFRPTEALHLLRTETSPGMLDVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRDPKGCKGKPLTVSLDGETGPGAGRGVAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGREVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGHAQEWEGVVRRWYERMEGQREREMAGPDVAIEVLGDLAGVRTPWPVSWYLVGDMAAQGLLKEREAARAVEALKEKEAFALFVSDSSTAAVRDGGGEGGKEGQESMGAEKDGLERKERWENGVEDVGGEVLAAKERHEGSRVMETTERSRAVKRRHRERRIPAYLDLPYSEPQHAYRERAWASAAPSGVTQSSPTFPETWR 926
            MASLRLGTKAATGGRNVSLSLRRNMLPLSSLTSSATGHAYKCCNMHGSKRPYTALLSGCRRFTPASPSPASSGSVSSTFSTISPSAQSASSTGNAPLCHRNDVMVKEGAKCKAPNQVHKSLDYDNLASEVMTAVVREDMASAMTSLERMNLIGHPGSPLSITGSLVGATCHAFLSLCQRRHRQTSGGKGLGEALHILSLQNLAASFDMACTRLLFSLLPTSHPAQWSTTFKALDLAFANLPAVAYPSQSLKRTALRQFAEAGRPEEVRWLLTRMQEPFLALSSKTSRAARSRQREKKRGIGKESHPPSLGEVGKLHSSAWHLFKAYLYAFRPTEALHLLRTETSPGMLDVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRDPKGCKGKPLTVSLDGETGPGAGRGVAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGREVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGHAQEWEGVVRRWYERMEGQREREMAGPDVAIEVLGDLAGVRTPWPVSWYLVGDMAAQGLLKEREAARAVEALKEKEAFALFVSDSSTAAVRDGGGEGGKEGQESMGAEKDGLERKERWENGVEDVGGEVLAAKERHEGSRVMETTERSRAVKRRHRERRIPAYLDLPYSEPQHAYRERAWASAAPSGVTQSSPTFPETWR
Sbjct:    1 MASLRLGTKAATGGRNVSLSLRRNMLPLSSLTSSATGHAYKCCNMHGSKRPYTALLSGCRRFTPASPSPASSGSVSSTFSTISPSAQSASSTGNAPLCHRNDVMVKEGAKCKAPNQVHKSLDYDNLASEVMTAVVREDMASAMTSLERMNLIGHPGSPLSITGSLVGATCHAFLSLCQRRHRQTSGGKGLGEALHILSLQNLAASFDMACTRLLFSLLPTSHPAQWSTTFKALDLAFANLPAVAYPSQSLKRTALRQFAEAGRPEEVRWLLTRMQEPFLALSSKTSRAARSRQREKKRGIGKESHPPSLGEVGKLHSSAWHLFKAYLYAFRPTEALHLLRTETSPGMLDVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRDPKGCKGKPLTVSLDGETGPGAGRGVAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGREVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGHAQEWEGVVRRWYERMEGQREREMAGPDVAIEVLGDLAGVRTPWPVSWYLVGDMAAQGLLKEREAARAVEALKEKEAFALFVSDSSTAAVRDGGGEGGKEGQESMGAEKDGLERKERWENGVEDVGGEVLAAKERHEGSRVMETTERSRAVKRRHRERRIPAYLDLPYSEPQHAYRERAWASAAPSGVTQSSPTFPETWR 926          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|299471045|emb|CBN78905.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 79.7221 bits (195), Expect = 1.669e-11
Identity = 70/271 (25.83%), Postives = 122/271 (45.02%), Query Frame = 0
Query:  438 QALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGREVGEGVR---KRLLDH 705
            + L LL +M +QGLTP+V T+ + I    + G  E  L+    KM KE  + PD   +   +   S+R  W++ +A    M   GL+    +S    + A+ K G+W    +LL R    +G    + T+   + A G  G++++AL  ++E++   +     +   + + +  C +   W       + M  +GL  +   Y S   + AC  +G W+  L  ++ +GA   S  A  + +L +    K GR  E    VR   +R L H
Sbjct:  478 EGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALD-LLAKM-KELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTP-DVISYTAAIDAYGKNGQWERAVELL-RQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELK---ETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTS--AIRACNAEGEWEKALGLLNLMGAHGVSPTA-TSYSLAIEACGKGGRREEAVCLVREMAQRGLSH 738          

HSP 2 Score: 68.1662 bits (165), Expect = 6.489e-8
Identity = 64/255 (25.10%), Postives = 111/255 (43.53%), Query Frame = 0
Query:  331 RPTEALHLLRTETSPGML-DVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRDPKGCKGKPLTVSLDGETGPGAGRGVAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQAL 584
            R  E L LLR   + G+  +V T N  +K   +    E+     A  ++ AM   ++ +Y  AIA+ ++  R                                    +A++LL  M  QGLTPDV ++ A ID + + G  E  +E+   +    + L P+   +  ++K   R  EWEK +   + ++E  ++    +S  + + A  K G+W E  DLL R    EG    + ++T A+ A    G++++AL
Sbjct:  475 RWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTP-DSITYNSAIAACSKRGR----------------------------------WKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELL--RQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDL-MSYNLAISACGKRGRWEEALDLL-REMPAEGLTPDVISYTSAIRACNAEGEWEKAL 690          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|552813710|ref|XP_005844014.1| (hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis] >gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis])

HSP 1 Score: 74.3294 bits (181), Expect = 8.336e-10
Identity = 58/233 (24.89%), Postives = 110/233 (47.21%), Query Frame = 0
Query:  431 TDCSNQDQ---ALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLS-DTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQR---EGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWD 656
            + C  Q Q   AL L+A M S+G+  +VHT+ AL++V  +  +L+  L+V+   +A+     P+   +  L+ +  +   WE+ I   +A+E  G+  + +  +TV++          G+ ++ L RI++R    G   T  T+T  + A+G  G+  +AL   +++ RR       N   +  L+  C +   W      ++ M  +G       Y S  +++ACA    W+
Sbjct:  203 SQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEG--CTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVII-----ACNMSGQAQEAL-RIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRR---GCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNS--LIAACAQGAQWE 422          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|1111109854|ref|XP_019247182.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g31850, chloroplastic [Nicotiana attenuata] >gi|1102145634|gb|OIT01964.1| pentatricopeptide repeat-containing protein, chloroplastic [Nicotiana attenuata])

HSP 1 Score: 72.4034 bits (176), Expect = 3.519e-9
Identity = 81/320 (25.31%), Postives = 133/320 (41.56%), Query Frame = 0
Query:  314 KLHSSAWHLFKAYLYAFRPTEALHLLRTETSPGMLDVETTNMLLKALSRHYLVEELFVFFAWAEKHAMVRLNTESYTHAIASLARTSRDPKGCKGKPLTVSLDGETGPGA-GRGVAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKG 632
            +L   AW+LFK             +     SP   DV T N+ L  L +   V+ELF  +     H   +  T +Y   I+ L ++++  +        VSL     P   G  + G     N D+A      M   G  P+   +  LI+ F +AGDLE   ++ F +M KE  +RPD   +  L+  L    + +  +   E ++  GL D   +S  +++    K GK  E   LL  +  R G    L T+   +   G+AG  ++A     E++R   L    N + +  L+   ++  D  G    +++M V G
Sbjct:  813 RLKELAWNLFK------------EMKDAGCSP---DVYTYNLFLDELGKSGKVDELFELYEEM-LHRGCKPFTITYNILISGLVKSNKVERAIDLYYDLVSLGVTPTPCTYGPLIDGLLKVENFDKAKDFFEEMVDYGCRPNCAIYNILINGFGKAGDLEAACDL-FNRMKKE-GVRPDLKTYTILVDCLCTAGKVDDALHYFEELKSAGL-DPDLISYNLMINGVGKSGKMKEALYLLDEMQSR-GVTPNLYTYNSLILNLGIAGMLEEAGKMYEELQR---LGLEPNVFTYNALIRGYSKSGDPDGAYAVYEKMMVGG 1109          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|298707411|emb|CBJ30040.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 71.2478 bits (173), Expect = 4.812e-9
Identity = 62/227 (27.31%), Postives = 101/227 (44.49%), Query Frame = 0
Query:  438 QALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVR-TLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVD 663
            +AL LL  M + GL+P+V TF + +     AG  E  L     +MA+E  + P+   F   +    +  +W   +     M         +  T  +  A  K G+W   + LL  +  RE GV   + TF  A+ A G  G++Q+AL  +R++     +    N + +   V  C     WA      ++M+ +G+ G  D+    A + ACA  GAW+  LA +D
Sbjct:  130 RALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALG-LLDQMAEE-GVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAI-DACGKAGEWRLAQGLLAEM--REKGVAPNVITFNSAISALGNGGQWQEALNLLRDM---PSMGVQPNMWSYTAAVTACGDNNRWARALAVHEQMRSRGIRG--DEVSFTAAIDACAQGGAWEMALALLD 346          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|674232153|gb|KFK24918.1| (hypothetical protein AALP_AA8G042000 [Arabis alpina])

HSP 1 Score: 70.8626 bits (172), Expect = 9.908e-9
Identity = 59/219 (26.94%), Postives = 102/219 (46.58%), Query Frame = 0
Query:  435 NQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKG 653
            N D+A+  +  M+     P   TF+ +ID F ++GD+   LEVF   M +     P    F  L+  L  +++ EK +   + M   G+S  +   T  +M  +  +G  G+  +   R HQ EG    + T+   + A   +G+ Q ALA  +E+  R   +   N+Y + +L+   AR  D        Q+M+ +G++ +   Y S   +SAC+  G
Sbjct:  556 NMDRAIQTVKEMQKLRHRPTTRTFMPIIDGFGKSGDMRRSLEVF--DMMRRCGCIPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYT-KIMQGYASVGDTGKAFEYFTR-HQNEGLEVDVFTYEALLKACCKSGRMQSALAVTKEMSTR---NIPRNSYVYNILIDGWARRGDVWEAADLMQQMKKEGVKPDIHTYTS--FISACSKAG 765          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|298705285|emb|CBJ48975.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.173e-8
Identity = 71/281 (25.27%), Postives = 127/281 (45.20%), Query Frame = 0
Query:  450 GLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHT--GMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMALLVLRAAKAGRGR-EVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGH 727
             + P+V ++  +I   A A   +   E  F +M KER +RP+   +G L+   ++R  WE  +   E M + GL+    + +  V+ A E+  +W +   LL R  +R+G +    T+   + A G +G++  A++ + E+    D+    G   +   ML   C R + W  V R   +MQ    E   D+Y     + A    G W   + ++D +    S+ +A++ + + V  +A A +G+    E + + +LD GL         L VV    G H
Sbjct:  104 AVEPNVVSYNNVITACANAKK-QKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVNYLEQMRQSGLAPNAVIYST-VISACERSDQWQKAVKLL-RTMRRDGILPVTVTYNTVISACGKSGQWSLAVSLLDEM---SDMGCPPGPVTFASAML--ACERARQWHHVLRIMDQMQED--EVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMD---SNGVAKDVVTVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQH 371          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|299471526|emb|CBN80012.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.512e-8
Identity = 80/333 (24.02%), Postives = 140/333 (42.04%), Query Frame = 0
Query:  427 VAGGTDCSNQDQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGACASSSLAEEAMAL--LVLRAAKAGRGREVGEGVRKRLLDHGLPIGPFLTEVLAVVSGEEGGHAQEWEGVVRRWYERMEGQREREMAG--PDV 755
            +A     S   +A+ LL  M+ QG+ P+V  + A I    + G  E  +++   K      L PD   +  ++   ++R +WE        M   G+     ++  +V+ A  K G+W E   LL R  Q  G    + T++  + A    G++++A+  +RE+          NA  + +++  CA+   W       Q MQ  G+  +   Y   A + ACA    W+  L  +  + A   + L    ++    +   AK GR +   E +R+ +  HGL   P +    AV++    G         R+W E ++  RE +  G  PDV
Sbjct:  228 IAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLL--KEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVV-ANIITYSIVIGACAKWGQWEEAVALL-REMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPME---GVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINY--SAAIDACAQASRWEQALWLLREMPA---TGLTPNVISYNSAIDACAKTGRSKIAVELLRE-MPAHGL--APDVITYSAVIASCAMG---------RQWEEALDLFREMQRQGITPDV 536          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|929757475|ref|XP_014153719.1| (hypothetical protein SARC_07806 [Sphaeroforma arctica JP610] >gi|906949282|gb|KNC79817.1| hypothetical protein SARC_07806 [Sphaeroforma arctica JP610])

HSP 1 Score: 70.0922 bits (170), Expect = 1.518e-8
Identity = 57/230 (24.78%), Postives = 107/230 (46.52%), Query Frame = 0
Query:  437 DQALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLSDTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQREGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVG 666
            ++AL L   M S GL  D  T+   I V   +G  +  LE+F  +MA  + +  +G ++   +    + K+W++ +     ++  G+  TK  +T +V  A  + G+W +  +L+  +  + G +    T+  A+ A G A K+Q+ALA   E++ +  +     AY    ++  C +G+ W      +  M   G++     Y   A+LSAC +   W+  L     +G
Sbjct:  589 EKALHLFNEMSSLGLKQDTDTYSTTIAVCERSGRWQKALELF-DEMAG-KNIERNGDIYTATIAACGKGKQWQRALELLAEIDTKGIKRTKVYNTTIV--ACHQGGQWQKTINLIIEMGSK-GILCNENTYAPAILACGEAAKWQEALALFDEMKSKR-IKLSTTAYN--AIISACGKGKQWQKAIVLFNEMDDVGVKRSRKTY--NAILSACEMGSQWETVLHLFSEMG 808          
BLAST of EWM28474.1 vs. NCBI_GenBank
Match: gi|545361311|ref|XP_005645958.1| (TPR-like protein [Coccomyxa subellipsoidea C-169] >gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 68.9366 bits (167), Expect = 1.951e-8
Identity = 56/235 (23.83%), Postives = 111/235 (47.23%), Query Frame = 0
Query:  438 QALSLLARMESQGLTPDVHTFVALIDVFAEAGDLEGGLEVFFGKMAKERRLRPDGAVFGKLMKLLSRRKEWEKVIACHEAMEELGLS-DTKEVSTVMVMYAWEKMGKWGEVKDLLGRIHQR---EGGVRTLKTFTYAMHAFGVAGKYQQALACVREVERREDLHTGMNAYGHMMLVHVCARGQDWAGVQRWWQRMQVKGLEGEADQYLSCAVLSACAVKGAWDDGLAFVDRVGAC 668
            +AL L+A M   G+  +VHT+ AL++V  +A +LE  L+V +G++ +E    P+   +  L+ +  +   W++ +   +A+E+ G   + +  +T++         + G+ +  L R+++R   +G   T  T+T  + A+G  GK ++AL   +++ RR       N   +  L+  C +   W         M     +     +   A+LSACA  G W       +++ +C
Sbjct:   91 KALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDV-YGQLLRE-GCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTIL-----SACNRSGQPEHAL-RVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRR---GCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFN--ALLSACAQGGQWKAAQDVFEQMPSC 312          
The following BLAST results are available for this feature:
BLAST of EWM28474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110884|gb|EWM28474.1|0.000e+0100.00pentatricopeptide repeat-containing protein [Nanno... [more]
gi|299471045|emb|CBN78905.1|1.669e-1125.83conserved unknown protein [Ectocarpus siliculosus][more]
gi|552813710|ref|XP_005844014.1|8.336e-1024.89hypothetical protein CHLNCDRAFT_59068 [Chlorella v... [more]
gi|1111109854|ref|XP_019247182.1|3.519e-925.31PREDICTED: pentatricopeptide repeat-containing pro... [more]
gi|298707411|emb|CBJ30040.1|4.812e-927.31conserved unknown protein [Ectocarpus siliculosus][more]
gi|674232153|gb|KFK24918.1|9.908e-926.94hypothetical protein AALP_AA8G042000 [Arabis alpin... [more]
gi|298705285|emb|CBJ48975.1|1.173e-825.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|299471526|emb|CBN80012.1|1.512e-824.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|929757475|ref|XP_014153719.1|1.518e-824.78hypothetical protein SARC_07806 [Sphaeroforma arct... [more]
gi|545361311|ref|XP_005645958.1|1.951e-823.83TPR-like protein [Coccomyxa subellipsoidea C-169] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2214rna2214Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications