EWM30653.1, cds22 (CDS) Nannochloropsis gaditana

Overview
NameEWM30653.1
Unique Namecds22
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:72655..73758 +
Alignment locationCM002455.1:73850..74155 +
Alignment locationCM002455.1:74295..74795 +
Alignment locationCM002455.1:75161..75622 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30653.1
ProductPhosphorylated CTD interacting factor 1, WW domain protein
Orig transcript idgnl|cribi|Naga_100242g2.5821.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:72655..73758 +
CM002455.1supercontigCM002455.1:73850..74155 +
CM002455.1supercontigCM002455.1:74295..74795 +
CM002455.1supercontigCM002455.1:75161..75622 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR022035PCIF1_WW
Homology
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|585113347|gb|EWM30653.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1611.28 bits (4171), Expect = 0.000e+0
Identity = 790/790 (100.00%), Postives = 790/790 (100.00%), Query Frame = 0
Query:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLEPPPKDLTNPASVRDAKGGGTAEWWW 790
            MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLEPPPKDLTNPASVRDAKGGGTAEWWW
Sbjct:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLEPPPKDLTNPASVRDAKGGGTAEWWW 790          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|553184548|ref|XP_005854108.1| (phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526] >gi|422294952|gb|EKU22251.1| phosphorylated ctd-interacting, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1365.52 bits (3533), Expect = 0.000e+0
Identity = 670/670 (100.00%), Postives = 670/670 (100.00%), Query Frame = 0
Query:   78 MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEE 747
            MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEE
Sbjct:    1 MGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEE 670          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|585113348|gb|EWM30654.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1300.03 bits (3363), Expect = 0.000e+0
Identity = 639/645 (99.07%), Postives = 640/645 (99.22%), Query Frame = 0
Query:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSR 645
            MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIK     +SR
Sbjct:    1 MLRPPADQITSKTKAPGVERHRKDRTLTTCVKRSGTVDGKLTKKKRKISVASPVVVRSRGIGTHNGEEDLMRDLLEEMGARMTQSINHFDAERRTNGLLSPSSVCKEKEQGGNEEDKEEEKQEADVEKNEEKQAKKPKKHHDTKEVNATRGSEGANRCGKGDGIPKRRRGEGEAKARGTKGGPGLATQEVSKQDQDKQTPQVLSNACVHLSSIARVSPLELWNPSLLIDQATLNLPWRDATGTGHRDTFPRPGTAFLLQGPDPHVEVARARGLVELARWFVSTALKHATEHPRTEAGGSPPQAAILHRALQAWRWNNKVVEERGRVDSKGVKGWNGKGPRPRLRDPVLPGSSACERDFRLAKCLTSREIQLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKVNRRRISR 645          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|298711525|emb|CBJ26613.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 117.472 bits (293), Expect = 2.231e-23
Identity = 83/255 (32.55%), Postives = 118/255 (46.27%), Query Frame = 0
Query:  454 LKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRY 708
            L  + LR+N+ HY K+K L+            S S     +   SSS+  PP    A   +FH+ L   L RY+AL      +                  +  DA         +DVL   F  RMECFASPFNCRY  YCS+  +TD  FGS GSFF+FQP  G + A+PP   +V+  M  HMD LL   ++++ L F V++       DS+    +R     S F +  I++   D+ +  G  + +  RY
Sbjct:  220 LGKNKLRMNSAHYDKMKELF------------SRSRVEGAARRQSSSTEHPP---PAWIGDFHDCLFSCLMRYEALQGGGFQA-----------------SMGGDA---------FDVLLKRFGARMECFASPFNCRYSRYCSAFPDTDGPFGSAGSFFDFQPTQGAYEANPPFVRDVILKMANHMDGLLQ--ATAKALTFVVIIP---CWEDSAGWKRLRD----SAFLSKHIKLDQKDHGYCEGKQHLRRNRY 424          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|242021221|ref|XP_002431044.1| (Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis] >gi|212516273|gb|EEB18306.1| Phosphorylated CTD-interacting factor, putative [Pediculus humanus corporis])

HSP 1 Score: 115.931 bits (289), Expect = 5.123e-23
Identity = 83/247 (33.60%), Postives = 116/247 (46.96%), Query Frame = 0
Query:  414 DHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHA--LRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVL 658
            +HPP+   RR   C  +  S+  P RL  +E  +  E +LL+ H   L IN  H QKL+ LY    F                                + + F  R+ CLL RYQA      +S      PP+L  S         A + AL P V++ L  +F V  ECFASP +C +R YCS   +TD +FGS G+  +F+P+TG F A+PP   E+ +AM+ H + LLS   SS  L F + +
Sbjct:  394 NHPPIPIMRR-VWCYPIQFSTPCP-RLPNIEFLQEREQALLRYHGDPLAINISHLQKLEQLYRYSCF-----------------------------DDKKFEHFLPRVWCLLKRYQAALGRVSNS------PPALGLS------GAGATQAALAPTVFECLHKMFAVTFECFASPLDCYFRQYCSWFPDTDSYFGSRGTILDFKPITGSFQANPPYCDELTEAMVNHFEKLLS--ESSEPLSFIIFM 595          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|936690889|ref|XP_014223431.1| (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Trichogramma pretiosum] >gi|936690891|ref|XP_014223432.1| PREDICTED: phosphorylated CTD-interacting factor 1 isoform X1 [Trichogramma pretiosum])

HSP 1 Score: 112.464 bits (280), Expect = 6.697e-22
Identity = 104/356 (29.21%), Postives = 153/356 (42.98%), Query Frame = 0
Query:  419 LRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGH--ALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPP-------FSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLE 765
            + + R   C  +  S  SP RL ++E N   + ++L+ H   + INT +  KL+ LY                         + S    F      D F  R+ CLL RYQ    +  DS A+                     + ALP  V++ L   F V  ECFASP NC ++ +CS+  +TD +FGS G F +F+P++G F  +PP   E++ AMI H++ +LS   SS  L F V L               R PPP        SPF+   + V A ++ +  G  +  P R +  G  +   +   L+V L +PA  A   +     R E + EA+   K E  RDR E
Sbjct:  408 VNTNRKVWCYSVQFSRQSP-RLPVIEFNHEGDQTMLRYHNEGMCINTHYLTKLEYLYR-----------------------FNCSDDRKF------DLFIPRVWCLLKRYQTYLGST-DSQAT---------------------QMALPVTVFESLQRSFGVTFECFASPLNCYFKQFCSAFADTDSYFGSRGPFNDFRPVSGSFQVNPPYCEELMDAMITHIESVLS--DSSEPLSFIVFLPEW------------RDPPPNALLKLEASPFKRKQVVVPAMEHEYRNGLQHVLPNRSMPRGELNIRAVHGTLVVWLQNPAGHAK--WGPTEERVEALLEAWRPGK-ERERDRQE 694          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|936690894|ref|XP_014223433.1| (PREDICTED: phosphorylated CTD-interacting factor 1 isoform X2 [Trichogramma pretiosum])

HSP 1 Score: 107.071 bits (266), Expect = 3.264e-20
Identity = 103/356 (28.93%), Postives = 152/356 (42.70%), Query Frame = 0
Query:  419 LRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGH--ALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVLSSGLVSVDSSTATTIRSPPP-------FSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLE 765
            + + R   C  +  S  SP RL ++E N   + ++L+ H   + INT +  KL+ LY                         + S    F      D F  R+ CLL RYQ    +  DS A+                     + ALP  V++ L   F V  ECFASP NC ++ +CS+  +TD +FGS G F +F+P++G F  +PP   E++ AMI H++ +LS   SS  L F V L               R PPP        SPF+   + V A ++ +  G  +  P+     G  +   +   L+V L +PA  A   +     R E + EA+   K E  RDR E
Sbjct:  408 VNTNRKVWCYSVQFSRQSP-RLPVIEFNHEGDQTMLRYHNEGMCINTHYLTKLEYLYR-----------------------FNCSDDRKF------DLFIPRVWCLLKRYQTYLGST-DSQAT---------------------QMALPVTVFESLQRSFGVTFECFASPLNCYFKQFCSAFADTDSYFGSRGPFNDFRPVSGSFQVNPPYCEELMDAMITHIESVLS--DSSEPLSFIVFLPEW------------RDPPPNALLKLEASPFKRKQVVVPAMEHEYRNGLQHVLPK-----GELNIRAVHGTLVVWLQNPAGHAK--WGPTEERVEALLEAWRPGK-ERERDRQE 689          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|585112272|gb|EWM29696.1| (Phosphorylated CTD interacting factor 1, WW domain protein [Nannochloropsis gaditana])

HSP 1 Score: 105.145 bits (261), Expect = 1.035e-19
Identity = 93/318 (29.25%), Postives = 136/318 (42.77%), Query Frame = 0
Query:  345 DPVLPGSSACERDFRLAKCLTSREI---QLPPEAAVELCEALGRKALTLLSSLPSSSSLPSSAPPRRRASRLDHPPVLRSRRHAPCLYLPLSSLSPARLALLEANEALELSLLKGHALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAA-TARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVL 658
            DP+LP         R  + L  RE+       + A  + E L + A+ LL  +             +RAS   +PP +        L     SLS   +   +A   L     K   + +N +HY+KL+AL+ +      + P        L           P  SA +E  FH R+  LL RY +LA  T R                          + A+    +DVL      RMECFASP NC Y  YCS+ ++TD  FGS+G+FF F+P  G + A+PP +  V+  M+ HM+ LL   +++  LGF VV+
Sbjct:  131 DPILPDPRLNNEHERAGRHLLMRELIEGGASNDTAKRVIEQLNKTAVKLLCRI-------------QRASASLNPPSV-------SLEARWQSLSKIYVHF-DAGRGLYSLRHKSKTVTVNRRHYEKLRALHARFGGMSINRPGIDRSQGNLKH----GKRERPGKSAEEERFFHLRVFLLLLRYSSLAGGTDRGG----------------------GFQGAINEEAFDVLRRHLDCRMECFASPLNCMYARYCSAFQDTDACFGSLGTFFNFRPRQGTYEANPPFSPCVIARMVDHMEDLLE--ATALPLGFVVVI 399          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|156553336|ref|XP_001601122.1| (PREDICTED: phosphorylated CTD-interacting factor 1 [Nasonia vitripennis])

HSP 1 Score: 104.375 bits (259), Expect = 2.343e-19
Identity = 70/227 (30.84%), Postives = 100/227 (44.05%), Query Frame = 0
Query:  434 SLSPARLALLEANEALELSLLKGH--ALRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVL 658
            SL   RL  +E     E ++L+ H  A+ IN  H  KL+ LY    F                                + + F  R+ C+L RYQ    +                          A + ALP  V++ L  +F V  ECFASP NC +R YCS+  +TD +FGS G F +F+P++G F A+PP   E+++AM+ H + LLS   S+  L F V L
Sbjct:  428 SLPTPRLPQIEYLPEREQTMLRFHNDAMCINNTHLAKLEHLYRHNCF-----------------------------DDRKFEMFLPRVWCMLKRYQTYLGSTES----------------------QATQMALPVTVFECLQRMFGVTFECFASPLNCYFRQYCSAFADTDAYFGSRGPFLDFRPISGSFQANPPYCEELMEAMVNHFERLLS--DSTEALSFVVFL 601          
BLAST of EWM30653.1 vs. NCBI_GenBank
Match: gi|815797838|ref|XP_012219588.1| (PREDICTED: phosphorylated CTD-interacting factor 1 [Linepithema humile])

HSP 1 Score: 103.605 bits (257), Expect = 4.160e-19
Identity = 96/352 (27.27%), Postives = 145/352 (41.19%), Query Frame = 0
Query:  434 SLSPARLALLEANEALELSLLKGHA--LRINTKHYQKLKALYIQRPFHPASSPPSASPAPVLSSTPSSSSSSPPFLSAAQEDEFHERLGCLLFRYQALAATARDSLASSSLPPSLPTSLPSCPVADDADERALPPRVYDVLASLFQVRMECFASPFNCRYRTYCSSQRETDCWFGSVGSFFEFQPLTGMFLAHPPRATEVVQAMIKHMDYLLSRCSSSRLLGFFVVL-------SSGLVSVDSSTATTIRSPPPFSPFQAWSIRVAATDYAFIAGSDYYQPRRYIHSGSDDSDGLDDLLLVALLSPAAAADPAYQLNSTREEEVREAFGSYKNELARDRLE--PPPKDLTNP 774
            SL P RL  ++     E ++L+ H   + IN  H  KL+ LY    +                                + + F  R+ C+L RYQ                               A + ALP  V++ L   F V  ECFASP NC +R YCSS  +TD +FGS G F +F+P++G F A+PP   E+++AM+ H + LLS   S+  L F V L        + L+ ++ S             F+   + V A ++ +  G  +  P+     G  +   +   L+V L +PA AA   +     R E + EA+   + E  RDR E   PP+    P
Sbjct:  429 SLPPPRLPQVDYLPEREQTMLRFHGDTMCINNTHLTKLEHLYRYNCY-----------------------------DDKKFEMFLPRVWCMLKRYQTYLGINEGQ----------------------ATQMALPVTVFECLQRSFGVTFECFASPLNCYFRQYCSSFADTDSYFGSRGPFLDFRPVSGSFQANPPYCEELMEAMVNHFERLLS--DSAEPLSFVVFLPEWRDPAPNALIKLEGSH------------FKRKQVVVPAMEHEYRHGFQHILPK-----GEVNIRAVHGTLVVWLQNPAGAA--RWGPTEERVEALLEAWRPGR-ERERDRQELLSPPRQTHQP 707          
The following BLAST results are available for this feature:
BLAST of EWM30653.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113347|gb|EWM30653.1|0.000e+0100.00Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|553184548|ref|XP_005854108.1|0.000e+0100.00phosphorylated ctd-interacting, partial [Nannochlo... [more]
gi|585113348|gb|EWM30654.1|0.000e+099.07Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|298711525|emb|CBJ26613.1|2.231e-2332.55conserved unknown protein [Ectocarpus siliculosus][more]
gi|242021221|ref|XP_002431044.1|5.123e-2333.60Phosphorylated CTD-interacting factor, putative [P... [more]
gi|936690889|ref|XP_014223431.1|6.697e-2229.21PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|936690894|ref|XP_014223433.1|3.264e-2028.93PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|585112272|gb|EWM29696.1|1.035e-1929.25Phosphorylated CTD interacting factor 1, WW domain... [more]
gi|156553336|ref|XP_001601122.1|2.343e-1930.84PREDICTED: phosphorylated CTD-interacting factor 1... [more]
gi|815797838|ref|XP_012219588.1|4.160e-1927.27PREDICTED: phosphorylated CTD-interacting factor 1... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna22rna22Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications