EWM30437.1, cds218 (CDS) Nannochloropsis gaditana

Overview
NameEWM30437.1
Unique Namecds218
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:549798..551159 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30437.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100100g22.8905.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:549798..551159 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|585113100|gb|EWM30437.1| (hypothetical protein Naga_100100g22 [Nannochloropsis gaditana])

HSP 1 Score: 916.761 bits (2368), Expect = 0.000e+0
Identity = 453/453 (100.00%), Postives = 453/453 (100.00%), Query Frame = 0
Query:    1 MVVYRNEEGMQGMRRGPVGDALSLLLDDYPSRILSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQEREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQLQALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADYRF 453
            MVVYRNEEGMQGMRRGPVGDALSLLLDDYPSRILSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQEREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQLQALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADYRF
Sbjct:    1 MVVYRNEEGMQGMRRGPVGDALSLLLDDYPSRILSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQEREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQLQALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADYRF 453          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|1210519115|dbj|GAX22113.1| (hypothetical protein FisN_6Hh362 [Fistulifera solaris])

HSP 1 Score: 191.045 bits (484), Expect = 5.713e-50
Identity = 118/345 (34.20%), Postives = 177/345 (51.30%), Query Frame = 0
Query:   38 SLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQEREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMK 382
            S+ ++ LL+   +   + AV PRN P ++Y +    N  +VS  L +P++++ L+Y+    N N +I T FT+ + GY  +F++E+V AT ++L  F  LE  +    P IP   LPWV + +   Y+P+ +TL  AD   +C+ASP++EE  KL    W     AT P     R +    +    T+            + L PE V            +RR       G + ++ A                 +  +  M AA+LGLK  D+ RRIL+YT+P   SK FF+  RG FP+HELCG  TAL L +RD+LG  M   ++L P+V++H MANFRGMK
Sbjct:  442 SIQQITLLIAAGSLACFAAVSPRNLPLDEYRFRILENARVVSLVLIFPAVVMALVYDGAMNNRNDVINTLFTSCSVGYTMAFISEVVLATVIRLAVFSLLEKRIFDLSPRIPLFILPWVLREN--GYKPKRITLFAADFLTSCIASPVVEEFVKLKILLWT----ATLPRNFNWRRKTVTDKHSQVTK------------TELVPEQV------------QRR------DGEVDIVNA-----------------NQHVTQMLAASLGLKMCDSIRRILLYTKPHHESKSFFSFCRGVFPIHELCGTITALGLAKRDLLGVAMPLWKILLPSVVVHGMANFRGMK 733          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|1210526624|dbj|GAX14582.1| (hypothetical protein FisN_6Lh362 [Fistulifera solaris])

HSP 1 Score: 190.274 bits (482), Expect = 1.012e-49
Identity = 118/345 (34.20%), Postives = 178/345 (51.59%), Query Frame = 0
Query:   38 SLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQEREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMK 382
            SL ++ LL    +   + AV PRN P  +Y +    N+ +VS +L +P+L++ L+Y+    N+N +I T FT+ + GY  +F++E++ AT ++L  F  LE  +    P IP   LPWV + +   YRP+ +TL  AD   +C+ASP++EE  KL    W     AT P     R++    +    T+            + L PE V            +RR       G +  + A                 +  +  M AA+LGLK  D+ RRIL+YT+P   SK FF+  RG FP+HELCG  TAL + +RD+LG  +   ++L P+V++H MANFRGMK
Sbjct:  451 SLQQITLLFAGGSFACFAAVSPRNLPLNEYRFRILENVRIVSLALIFPALVMALVYDGAMNNLNDVINTLFTSCSVGYTMAFISEVMLATVIRLAVFSFLEKRIFDLSPRIPLFILPWVLREN--GYRPKRITLFAADFLTSCIASPLVEEFVKLKILLWT----ATLPQNFNWRKKSVTDKNSHVTK------------TELVPEQV------------QRR------DGEVDTVNA-----------------NQHVTQMLAASLGLKMCDSIRRILLYTKPHHESKSFFSFCRGVFPIHELCGTITALGIAKRDLLGVAIPLWKILLPSVVVHGMANFRGMK 742          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|1072223812|gb|OEU08565.1| (hypothetical protein FRACYDRAFT_249457 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 187.963 bits (476), Expect = 3.640e-48
Identity = 147/506 (29.05%), Postives = 218/506 (43.08%), Query Frame = 0
Query:   36 IASLARLGLLVLTATGLAYLAVVPRNAPTEQYN--------------------------------YLFKTNLLLVS----ASLAWPSLLLCLMYNAREIN--VNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPH----------------MQAACPEI--------------------PSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQWGGWVRATTPLQAQ----EREEQRRQREQDQTQEPAGPSEGANPDSSLSPEAVGAWARQSPPDRPRRRPLRRLLAGILSLLLAPLSAGPGGRRYRRPESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQL------------QALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADY 451
            I +  ++ + +L   G  Y AV PRN P  +YN                                Y F  NL  +S    AS     +      N   I+  ++ +I +F+T+   GY+  F+ EI+  T L+L+ F   EP+                +     EI                    P   LPWV +     YRP+ +TLL+AD+  +C+A PIIEE  KL   QW      T PL       ++     ++++    EP            ++ E V      +     + +   RL                 GRR     +++  +  M A +LG+K AD  RR+ +YT+ QD  K  +A +RG FPV ELCG  TAL L RRD+LG+RM    LL PAVI+HSMAN RGMKPIFKW S++PW+EMQL             ++     ++ L+ + KA   + W  +L RV GY    ++++++Q   R   Y
Sbjct:  679 INTSRKVCMCLLLMVGTCYSAVSPRNLPYVEYNIQFYNNIKSCALVILPPLLGYTWIIIDWNQLQYYFHDNLSSISNKKSASSGSNKVSTTTTKNDSGISTAIHIMIHSFYTSFIYGYIWVFVLEIIWTTILRLIVFLMFEPNNMFGIDINASSFSWSGLVGVGGEIMNKIMSNNKNNGSSSTSSMPPLFVLPWVLRE--YKYRPKRITLLVADIVTSCVACPIIEEFIKLRLLQW------TMPLSKNFIWVQKLSNHDKKQKRMVAEPI-----------VNDETVETTTATTAATSNKSK--IRL-----------------GRRDGEVTNINPYISGMIAVSLGIKWADAIRRVCMYTKVQDEHKCIYAFSRGMFPVQELCGIMTALRLARRDVLGQRMPLWNLLLPAVIIHSMANLRGMKPIFKWNSATPWSEMQLSPNLFSSAETISSSMDGSGTSSTLKWLGKAFPKITWVIILFRVTGYCGKNYFMINRQAMKRTTTY 1146          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|224004286|ref|XP_002295794.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|209585826|gb|ACI64511.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 167.933 bits (424), Expect = 2.806e-41
Identity = 80/161 (49.69%), Postives = 106/161 (65.84%), Query Frame = 0
Query:  291 SVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQLQALSAPDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADY 451
            +++  +  M AA+LGLK  D+ RRIL+YT+  D+ K F+A+ RG FP+HELCG  TAL L RRDILG  M   +++ PAV +H MANFRGMKPIFKW SS+PW+EMQL         T  Q + K+   LVWF +L RVLG+ +  +YL+ +Q   R   Y
Sbjct:  776 NINCYVTQMLAASLGLKLFDSTRRILMYTKKSDSYKHFYAVCRGAFPIHELCGTMTALFLARRDILGVNMPMWKIIGPAVFIHGMANFRGMKPIFKWNSSTPWSEMQLYPWKVGSNFTLKQILSKSYAKLVWFTILCRVLGFCVKNYYLIQRQAMKRMTTY 936          

HSP 2 Score: 117.857 bits (294), Expect = 1.779e-24
Identity = 65/164 (39.63%), Postives = 91/164 (55.49%), Query Frame = 0
Query:   34 LSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQW 197
            +S  SL ++    +    L+Y AV PR  P  +YN LF   L  V  S   P  +L  +Y+ +  N+N +I TF  + T GY  +F+ EI+  T L+L  F   EP + +  P++PSI LPWV +     YRP+ +TL  AD A +C+ASPIIEE  KL   QW
Sbjct:  584 ISFDSLQKIAFSTIGVALLSYCAVSPRTLPFPEYNRLFLQTLSTVGLSAIIPLAMLMCVYDGKYNNINTIIGTFHVSFTLGYTLAFVLEIIVTTALRLGVFMIWEPAIFSLTPKVPSIILPWVLREK--QYRPKRITLFAADFATSCVASPIIEEYLKLKIVQW 745          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|397615059|gb|EJK63190.1| (hypothetical protein THAOC_16170 [Thalassiosira oceanica])

HSP 1 Score: 156.762 bits (395), Expect = 1.297e-37
Identity = 84/184 (45.65%), Postives = 112/184 (60.87%), Query Frame = 0
Query:  278 SAGPGGRRYRRP---------ESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFRGMKPIFKWASSSPWTEMQLQALS-APDYATALQQIWKAVWGLVWFAVLARVLGYIMFRHYLLSKQVRLRYADY 451
            S+   GR+ R P          +++  +V M AA+LGLK  D  RRIL+YT+  D  K  +A+ RG FP+HELCGA TAL L RRD+LG  +   ++L PAV +H MANFRGMKPIFKW S+SPW+EMQ+  LS   D     Q + K+   LVW  +L RV G+ +  +YL+ +Q   R   Y
Sbjct:  702 SSKGKGRKKRVPVRGIDSPQVTNINCYMVQMLAASLGLKLFDVTRRILMYTKDNDRFKKTYAVYRGVFPIHELCGAMTALLLARRDVLGVSLPTWKILGPAVFIHGMANFRGMKPIFKWNSASPWSEMQINQLSRESDVPLWRQLMPKSYAKLVWLTILCRVFGFCIKNYYLIGRQAVQRTTVY 885          

HSP 2 Score: 82.0333 bits (201), Expect = 5.881e-13
Identity = 58/183 (31.69%), Postives = 89/183 (48.63%), Query Frame = 0
Query:   16 GPVGDALSLLLDDYPSRILSIASL-ARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQW 197
            G  G     L D+ PS+  + +S+ +++G+           AVVP  +P      L   +    S+ +  P    C +       V+  I TF  + T GY  +F+ E++  T ++L  F   EP +    PE+PSI LPWV +     Y+P+ +TL  AD A +C+ASP+IEE  KL   QW
Sbjct:  531 GDAGMQREALADNVPSKNAATSSIHSQMGVRS---------AVVPPTSP------LISASPPRTSSLMKSPEGPYCEL-------VDESIGTFHVSFTLGYALAFIAEVITTTLVRLGVFKIWEPAIFNLTPEVPSIILPWVLREK--QYKPKRITLFAADFAASCIASPVIEEIIKLKVVQW 689          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|219111335|ref|XP_002177419.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411954|gb|EEC51882.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 120.553 bits (301), Expect = 1.760e-25
Identity = 69/189 (36.51%), Postives = 106/189 (56.08%), Query Frame = 0
Query:    9 GMQGMRRGPVGDALSLLLDDYPSRILSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWVWKTDCVSYRPRLLTLLIADLAINCLASPIIEEAAKLLCYQW 197
            G   M    +G   S  L +  +RI S  ++ ++  +++    L Y AV PR  P  +YN  F  N+  VS S   P + +  +++ARE +VN ++ TFF + T GY  +F  E+V AT ++LL F+  EP++ +  P +P   LPWV + +C  YRP+ +TLL AD   +C+A+P IEE  KL   QW
Sbjct:  625 GTHPMETSQLGFGTSQSLAEASARI-SFDAIQQISFMMMMTALLCYSAVSPRTLPLTEYNLRFYENIQSVSLSAVVPIISMVSVFDARENDVNRIVNTFFFSFTLGYTMAFAGEVVMATVVRLLTFFWFEPNIFSLTPMVPVPILPWVLR-EC-KYRPKRITLLAADFGTSCVAAPFIEEYMKLKIVQW 810          
BLAST of EWM30437.1 vs. NCBI_GenBank
Match: gi|298711579|emb|CBJ32640.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 98.2117 bits (243), Expect = 3.349e-18
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 0
Query:  289 PESVHSTLVYMTAAALGLKAADNARRILVYTRPQDTSKPFFALARGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFR 379
            P  VH+ L+Y+  +A+GLKAA   +R+LVYTR     K FFA+ARGFFP+ ELCG+  A+NL RRDILG+RM+ ++L    V L++ A FR
Sbjct:  600 PTHVHTYLLYVLGSAMGLKAACTMQRVLVYTREYHEHKTFFAIARGFFPLFELCGSIMAMNLARRDILGDRMNRLQLFFVPVSLNAYAVFR 690          

HSP 2 Score: 88.1965 bits (217), Expect = 5.388e-15
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 0
Query:   30 PSRILSIASLARLGLLVLTATGLAYLAVVPRNAPTEQYNYLFKTNLLLVSASLAWPSLLLCLMYNAREINVNYLIRTFFTAATAGYLGSFLTEIVAATGLKLLAFYRLEPHMQAACPEIPSIHLPWV 156
            P + L++ S +R+      AT  A+LAV P NAP + Y  LF+ NL L++ASL  P++   L+Y+  + N+N  +R    A T GYL SF  EIVAAT  +L     +EP      P +P+I LPWV
Sbjct:  440 PPKTLTLRSWSRIMGAAGIATAGAFLAVSPNNAPRDLYLALFRRNLGLIAASLVGPAVYSFLLYDGSKANINTYVRVVTFAFTWGYLISFALEIVAATSFQLCVLAVMEPKAFDLTPHVPAIFLPWV 566          
The following BLAST results are available for this feature:
BLAST of EWM30437.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 8
Match NameE-valueIdentityDescription
gi|585113100|gb|EWM30437.1|0.000e+0100.00hypothetical protein Naga_100100g22 [Nannochlorops... [more]
gi|1210519115|dbj|GAX22113.1|5.713e-5034.20hypothetical protein FisN_6Hh362 [Fistulifera sola... [more]
gi|1210526624|dbj|GAX14582.1|1.012e-4934.20hypothetical protein FisN_6Lh362 [Fistulifera sola... [more]
gi|1072223812|gb|OEU08565.1|3.640e-4829.05hypothetical protein FRACYDRAFT_249457 [Fragilario... [more]
gi|224004286|ref|XP_002295794.1|2.806e-4149.69predicted protein, partial [Thalassiosira pseudona... [more]
gi|397615059|gb|EJK63190.1|1.297e-3745.65hypothetical protein THAOC_16170 [Thalassiosira oc... [more]
gi|219111335|ref|XP_002177419.1|1.760e-2536.51predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298711579|emb|CBJ32640.1|3.349e-1852.75conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna218rna218Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications