EWM28489.1, cds2173 (CDS) Nannochloropsis gaditana

Overview
NameEWM28489.1
Unique Namecds2173
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002458.1:1086448..1086679 +
Alignment locationCM002458.1:1087060..1088044 +
Alignment locationCM002458.1:1088544..1088658 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM28489.1
ProductMAGE protein
Orig transcript idgnl|cribi|Naga_100058g8.4256.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002458.1supercontigCM002458.1:1086448..1086679 +
CM002458.1supercontigCM002458.1:1087060..1088044 +
CM002458.1supercontigCM002458.1:1088544..1088658 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002190MHD_dom
Homology
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|585110905|gb|EWM28489.1| (MAGE protein [Nannochloropsis gaditana])

HSP 1 Score: 926.006 bits (2392), Expect = 0.000e+0
Identity = 443/443 (100.00%), Postives = 443/443 (100.00%), Query Frame = 0
Query:    1 MPKNNYKGVVSCLCVHVEVVPVCNKGWDRAVYDVKASSFSYTMKNISVEARDTCVVNCRDTIARIRDIQAQSIPFKTSLYRMPKGRKRRVPDVAEDEEEAETETCRAPGNEDREDEADADREKEHEKENTSLVGKSIRASTRASRMTTAVVEDDASEDEKLEEEEDKTSRRGKGARPQSRHLSSRKRQPPMKASQDGNYYCQTPVETLFSFTQTEDGPVINQREAQASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSKSQAGGGGARGGMRFTVPWTGNDGLRGSPCQDGTGAQAWSKMRGATPVSASRWFDWLV 443
            MPKNNYKGVVSCLCVHVEVVPVCNKGWDRAVYDVKASSFSYTMKNISVEARDTCVVNCRDTIARIRDIQAQSIPFKTSLYRMPKGRKRRVPDVAEDEEEAETETCRAPGNEDREDEADADREKEHEKENTSLVGKSIRASTRASRMTTAVVEDDASEDEKLEEEEDKTSRRGKGARPQSRHLSSRKRQPPMKASQDGNYYCQTPVETLFSFTQTEDGPVINQREAQASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSKSQAGGGGARGGMRFTVPWTGNDGLRGSPCQDGTGAQAWSKMRGATPVSASRWFDWLV
Sbjct:    1 MPKNNYKGVVSCLCVHVEVVPVCNKGWDRAVYDVKASSFSYTMKNISVEARDTCVVNCRDTIARIRDIQAQSIPFKTSLYRMPKGRKRRVPDVAEDEEEAETETCRAPGNEDREDEADADREKEHEKENTSLVGKSIRASTRASRMTTAVVEDDASEDEKLEEEEDKTSRRGKGARPQSRHLSSRKRQPPMKASQDGNYYCQTPVETLFSFTQTEDGPVINQREAQASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSKSQAGGGGARGGMRFTVPWTGNDGLRGSPCQDGTGAQAWSKMRGATPVSASRWFDWLV 443          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|567992081|gb|ETL42280.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570953524|gb|ETP18781.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 68.1662 bits (165), Expect = 2.813e-9
Identity = 53/195 (27.18%), Postives = 93/195 (47.69%), Query Frame = 0
Query:  206 ETLFSFTQTEDGPVINQREA--------QASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCA-QNKIPEQVLFKQLQEAQDGLEL-VSKSQAG 390
            E L  FTQT+    ++Q E         +AS+    P   K    LS      + ++ +RY+ +K   + P+    +  +V  +Y K++ R     A +++E +FGY +V     +      +E Y ++ +  S    + MN  GK  + RGF M+V+GL++CA   ++ E  L+KQL      ++L V+  Q G
Sbjct:   59 EALLDFTQTDYAVQMSQAEPLAGDDSDEEASKRNKEPTKPKALHKLSDKALDELTAKLVRYVLYKGGLKLPIKFADISKDVFPQY-KSVSRYFFYHAKQKIERVFGYRVV-----QVEDSTSKELYLVLNNASSQEHLQLMNKTGK-ASSRGFLMMVLGLLWCAPARRLSEDDLWKQLIRLDPAVKLKVNHPQLG 246          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|567992080|gb|ETL42279.1| (hypothetical protein L916_06866 [Phytophthora parasitica] >gi|570953523|gb|ETP18780.1| hypothetical protein F441_07029 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 67.781 bits (164), Expect = 6.977e-9
Identity = 53/195 (27.18%), Postives = 93/195 (47.69%), Query Frame = 0
Query:  206 ETLFSFTQTEDGPVINQREA--------QASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVVKKYGKALVRPVLKAAAEQLESIFGYTLVTPPAYRFPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCA-QNKIPEQVLFKQLQEAQDGLEL-VSKSQAG 390
            E L  FTQT+    ++Q E         +AS+    P   K    LS      + ++ +RY+ +K   + P+    +  +V  +Y K++ R     A +++E +FGY +V     +      +E Y ++ +  S    + MN  GK  + RGF M+V+GL++CA   ++ E  L+KQL      ++L V+  Q G
Sbjct:   59 EALLDFTQTDYAVQMSQAEPLAGDDSDEEASKRNKEPTKPKALHKLSDKALDELTAKLVRYVLYKGGLKLPIKFADISKDVFPQY-KSVSRYFFYHAKQKIERVFGYRVV-----QVEDSTSKELYLVLNNASSQEHLQLMNKTGK-ASSRGFLMMVLGLLWCAPARRLSEDDLWKQLIRLDPAVKLKVNHPQLG 246          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|299117332|emb|CBN75292.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 66.6254 bits (161), Expect = 1.065e-8
Identity = 45/158 (28.48%), Postives = 89/158 (56.33%), Query Frame = 0
Query:  227 ASQCEMRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARREPVHRQKLHDEVV-KKYGKA-LVRPVLKAAAEQLESIFGYTLVTPPAYR--FPRDADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNK-IPEQVLFKQLQEAQD 379
            + + ++  +D+K+   LS   +K +V + +R++  K    EP+ R+++ D V+ +KY KA +++ +L  A E+L+   G+ + TP   +  F +D    ++Y++  + +    K +   GK  A RG  +LV+ +VFC+ +K + E  LFK+L +  D
Sbjct:    9 SKEVQIEEKDQKKGNELSDLAKKDLVKKMMRFLLMKGLNHEPLTRKEVMDNVLGEKYRKAGVLKFILNKADEKLQQGMGFKIKTPLPDKPWFVKD----TFYVVNVLNNEQHFKEV-LRGKGQAGRGLLVLVLSIVFCSSDKSVAENQLFKKLHDHVD 161          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|194691392|gb|ACF79780.1| (unknown [Zea mays])

HSP 1 Score: 63.5438 bits (153), Expect = 2.477e-7
Identity = 54/197 (27.41%), Postives = 96/197 (48.73%), Query Frame = 0
Query:  232 MRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARRE--PVHRQKLHDEVVKKY-GKALVRPVLKAAAEQLESIFGYTL-----VTPPAYRFPR------DADQESYYLITSIRSHSLSKAMNAYGKDVA---YRGFCMLVMGLVFCAQNKIPEQVLFKQLQEAQDGLELVSKSQAGGGGARGGMRFTVPWTGNDGLR 411
            M   DE     +S++++  +V+E +RY+ FK  +    P+ R++L   + K Y  +AL   V+  A E+L + FGY +        PA R  R      +AD +SY L++ +     SK    Y +D A     GF   V+G++  A  K+PE+ L+ QL+    GL    ++    G  +   ++++ +   +G+R
Sbjct:    1 MATSDELAQIDISKEEKDKLVAEVMRYVLFKTHQSSDCPIKREELTGIITKNYRQRALPTLVINEAKERLAATFGYEMRELQRTRAPATRSGRPAQRQFNADAKSYVLVSMLDPEVYSK----YVEDKAAAHLSGFAFAVIGIIHLAGGKMPEEDLWHQLKRV--GLNETDEAHLVLGNNKQETKYSLVYMIEEGVR 191          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|1044530483|ref|XP_017409869.1| (PREDICTED: melanoma-associated antigen D1 [Vigna angularis] >gi|920682412|gb|KOM29184.1| hypothetical protein LR48_Vigan635s010900 [Vigna angularis])

HSP 1 Score: 61.2326 bits (147), Expect = 4.115e-7
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 0
Query:  235 QDEKQFQGLSQDQQKVVVSEAIRYIFFKAARRE--PVHRQKLHDEVVKKYG-KALVRPVLKAAAEQLESIFGYTL-----VTPPAYRFPR-----DADQESYYLITSIRSHSLSKAMNAYGKDVAYRGFCMLVMGLVFCAQNKIPEQVLFKQL 374
            +D  QF G+S++++  +V E IRY+ FK       P+ R++L   V K Y  ++L   V+  A ++L S+FGY +       P +    R      AD +SY LI+ +      K +    K     GF  +V+ +V  A  KIPE +L+ QL
Sbjct:    6 EDFAQF-GISKEEKDKLVGEVIRYVLFKTHHTSGCPIKREELTQVVTKNYHQRSLPAFVINEAKDKLSSVFGYEMKELQRAQPSSKAQTRASQQSGADPKSYILISQLPPDVYEKYV-VDAKTAHLSGFTFVVISIVHLAGGKIPEDILWSQL 156          
BLAST of EWM28489.1 vs. NCBI_GenBank
Match: gi|194698120|gb|ACF83144.1| (unknown [Zea mays] >gi|195627424|gb|ACG35542.1| MAGE [Zea mays] >gi|1142852890|gb|ONM51374.1| hypothetical protein ZEAMMB73_Zm00001d018804 [Zea mays])

HSP 1 Score: 60.4622 bits (145), Expect = 8.549e-7
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 0
Query:  232 MRPQDEKQFQGLSQDQQKVVVSEAIRYIFFKAARRE--PVHRQKLHDEVVKKY-GKALVRPVLKAAAEQLESIFGYTL-----VTPPAYRFPR------DADQESYYLITSIRSHSLSKAMNAYGKDVA---YRGFCMLVMGLVFCAQNKIPEQVLFKQLQ 375
            M   DE     +S++++  +V+E +RY+ FK  +    P+ R++L   + K Y  +AL   V+  A E+L + FGY +        PA R  R      +AD +SY L++ +     SK    Y +D A     GF   V+G++  A  K+PE+ L+ QL+
Sbjct:    1 MATSDELAQIDISKEEKDKLVAEVMRYVLFKTHQSSDCPIKREELTGIITKNYRQRALPTLVINEAKERLAATFGYEMRELQRTRAPATRSGRPAQRQFNADAKSYVLVSMLDPEVYSK----YVEDKAAAHLSGFAFAVIGIIHLAGGKMPEEDLWHQLK 157          
The following BLAST results are available for this feature:
BLAST of EWM28489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585110905|gb|EWM28489.1|0.000e+0100.00MAGE protein [Nannochloropsis gaditana][more]
gi|567992081|gb|ETL42280.1|2.813e-927.18hypothetical protein, variant [Phytophthora parasi... [more]
gi|567992080|gb|ETL42279.1|6.977e-927.18hypothetical protein L916_06866 [Phytophthora para... [more]
gi|299117332|emb|CBN75292.1|1.065e-828.48conserved unknown protein [Ectocarpus siliculosus][more]
gi|194691392|gb|ACF79780.1|2.477e-727.41unknown [Zea mays][more]
gi|1044530483|ref|XP_017409869.1|4.115e-731.37PREDICTED: melanoma-associated antigen D1 [Vigna a... [more]
gi|194698120|gb|ACF83144.1|8.549e-730.43unknown [Zea mays] >gi|195627424|gb|ACG35542.1| MA... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2181rna2181Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications